HEADER OXIDOREDUCTASE 03-JUN-15 5A3V TITLE CRYSTAL STRUCTURE OF THE CHLOROPLASTIC GAMMA-KETOL REDUCTASE FROM TITLE 2 ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE QUINONE-OXIDOREDUCTASE HOMOLOG, CHLOROPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAMMA-KETOL REDUCTASE; COMPND 5 EC: 1.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 TISSUE: CHLOROPLAST; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, GAMMA-KETOL REDUCTASE, ARABIDOPSIS THALIANA, KEYWDS 2 CHLOROPLAST, OXYDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MAS-Y-MAS,G.CURIEN,C.GIUSTINI,N.ROLLAND,J.L.FERRER,D.COBESSI REVDAT 5 08-MAY-24 5A3V 1 REMARK REVDAT 4 09-AUG-17 5A3V 1 REMARK REVDAT 3 05-APR-17 5A3V 1 JRNL REVDAT 2 22-MAR-17 5A3V 1 JRNL REVDAT 1 28-SEP-16 5A3V 0 JRNL AUTH S.MAS Y MAS,G.CURIEN,C.GIUSTINI,N.ROLLAND,J.L.FERRER, JRNL AUTH 2 D.COBESSI JRNL TITL CRYSTAL STRUCTURE OF THE CHLOROPLASTIC OXOENE REDUCTASE JRNL TITL 2 CEQORH FROM ARABIDOPSIS THALIANA. JRNL REF FRONT PLANT SCI V. 8 329 2017 JRNL REFN ESSN 1664-462X JRNL PMID 28337214 JRNL DOI 10.3389/FPLS.2017.00329 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 28266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2736 - 5.0392 0.99 2905 154 0.1479 0.1979 REMARK 3 2 5.0392 - 4.0007 1.00 2795 147 0.1314 0.1879 REMARK 3 3 4.0007 - 3.4953 0.99 2738 143 0.1809 0.2502 REMARK 3 4 3.4953 - 3.1758 1.00 2737 144 0.1936 0.2485 REMARK 3 5 3.1758 - 2.9482 1.00 2738 144 0.1979 0.2726 REMARK 3 6 2.9482 - 2.7745 1.00 2717 143 0.2154 0.3057 REMARK 3 7 2.7745 - 2.6355 0.99 2679 140 0.2184 0.3317 REMARK 3 8 2.6355 - 2.5208 0.99 2703 142 0.2040 0.2835 REMARK 3 9 2.5208 - 2.4238 0.95 2580 136 0.2115 0.2636 REMARK 3 10 2.4238 - 2.3402 0.85 2262 119 0.2219 0.3292 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4998 REMARK 3 ANGLE : 1.350 6806 REMARK 3 CHIRALITY : 0.047 798 REMARK 3 PLANARITY : 0.006 876 REMARK 3 DIHEDRAL : 14.523 1863 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:80) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2130 0.3073 -41.9066 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.1100 REMARK 3 T33: 0.1264 T12: -0.0307 REMARK 3 T13: 0.0333 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 3.0687 L22: 1.6435 REMARK 3 L33: 1.9462 L12: -0.7612 REMARK 3 L13: 0.2325 L23: -0.3101 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: 0.1260 S13: -0.1887 REMARK 3 S21: -0.1012 S22: 0.0339 S23: 0.1276 REMARK 3 S31: 0.1887 S32: -0.1874 S33: -0.0234 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 81:131) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0965 8.1125 -33.6611 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.1966 REMARK 3 T33: 0.1524 T12: 0.0101 REMARK 3 T13: 0.0455 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.6022 L22: 1.0609 REMARK 3 L33: 3.0526 L12: 0.4731 REMARK 3 L13: 0.6190 L23: -0.4124 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.3084 S13: 0.0269 REMARK 3 S21: 0.1112 S22: 0.0206 S23: 0.2612 REMARK 3 S31: -0.0419 S32: -0.5121 S33: 0.0015 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 132:299) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6558 -6.8947 -14.8221 REMARK 3 T TENSOR REMARK 3 T11: 0.1523 T22: 0.1537 REMARK 3 T33: 0.1157 T12: -0.0070 REMARK 3 T13: 0.0239 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.0853 L22: 3.4563 REMARK 3 L33: 1.9752 L12: -0.3391 REMARK 3 L13: 0.7296 L23: -0.6782 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: -0.1512 S13: -0.0674 REMARK 3 S21: 0.3601 S22: 0.0322 S23: -0.1064 REMARK 3 S31: -0.1754 S32: 0.0455 S33: 0.0150 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 300:329) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8818 6.7050 -33.0506 REMARK 3 T TENSOR REMARK 3 T11: 0.0498 T22: 0.1338 REMARK 3 T33: 0.1491 T12: -0.0243 REMARK 3 T13: 0.0021 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.4933 L22: 4.4708 REMARK 3 L33: 6.4960 L12: 0.7626 REMARK 3 L13: -1.1052 L23: 0.3563 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: 0.0688 S13: 0.2044 REMARK 3 S21: 0.0651 S22: 0.0848 S23: -0.3424 REMARK 3 S31: 0.0167 S32: 0.3657 S33: -0.0395 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 3:80) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4041 -44.8572 -15.4581 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.0962 REMARK 3 T33: 0.1347 T12: -0.0086 REMARK 3 T13: -0.0220 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.2728 L22: 1.6320 REMARK 3 L33: 3.1029 L12: 0.2796 REMARK 3 L13: -1.3314 L23: -0.1003 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: -0.1383 S13: -0.0222 REMARK 3 S21: 0.0892 S22: 0.0106 S23: -0.2462 REMARK 3 S31: 0.0442 S32: 0.2054 S33: 0.0296 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 81:131) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4628 -42.2244 -7.0521 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.1506 REMARK 3 T33: 0.1243 T12: -0.0124 REMARK 3 T13: 0.0441 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 3.3344 L22: 3.7267 REMARK 3 L33: 4.4054 L12: -0.6212 REMARK 3 L13: 1.2095 L23: 1.0278 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: -0.2232 S13: 0.4041 REMARK 3 S21: 0.1322 S22: 0.0570 S23: 0.2260 REMARK 3 S31: -0.2644 S32: -0.2131 S33: -0.0353 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 132:299) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8285 -29.8726 -30.0776 REMARK 3 T TENSOR REMARK 3 T11: 0.1293 T22: 0.1532 REMARK 3 T33: 0.1443 T12: -0.0154 REMARK 3 T13: 0.0062 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.1154 L22: 2.5207 REMARK 3 L33: 1.6362 L12: 1.0741 REMARK 3 L13: 0.3894 L23: -0.5028 REMARK 3 S TENSOR REMARK 3 S11: -0.1608 S12: 0.3473 S13: 0.0345 REMARK 3 S21: -0.2737 S22: 0.1420 S23: 0.1054 REMARK 3 S31: -0.1706 S32: 0.0407 S33: 0.0094 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 300:329) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0259 -51.1172 -25.0133 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1270 REMARK 3 T33: 0.1223 T12: 0.0094 REMARK 3 T13: -0.0488 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 5.4470 L22: 3.7383 REMARK 3 L33: 1.9377 L12: -0.2017 REMARK 3 L13: -0.3156 L23: -0.2008 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: 0.4281 S13: -0.2269 REMARK 3 S21: -0.1914 S22: -0.0958 S23: 0.0767 REMARK 3 S31: 0.2383 S32: -0.1159 S33: -0.0295 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 4:97 OR RESSEQ REMARK 3 104:150 OR RESSEQ 157:328) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 4:97 OR RESSEQ REMARK 3 104:150 OR RESSEQ 157:328) REMARK 3 ATOM PAIRS NUMBER : 2247 REMARK 3 RMSD : 0.085 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1290063960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : DOUBLE SI 1 1 1 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 42.267 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.640 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE, 0.1 M TRIS-HCL REMARK 280 PH 8.5, 32% PEG4000 (V/V) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.94500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 104.94500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.36000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.36000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 104.94500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.36000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.32500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 104.94500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.36000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.32500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 322 O HOH B 2170 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 10 OE2 GLU A 22 3554 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 70 142.93 87.85 REMARK 500 PRO A 132 -71.89 -55.03 REMARK 500 ASN A 144 -80.20 -97.02 REMARK 500 ASP A 151 -140.43 -84.92 REMARK 500 THR A 153 -102.54 -70.89 REMARK 500 ALA B 70 140.63 86.15 REMARK 500 HIS B 99 17.69 49.28 REMARK 500 ASN B 144 -79.85 -97.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2187 DISTANCE = 6.24 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A3J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CHLOROPLASTIC GAMMA-KETOL REDUCTASE FROM REMARK 900 ARABIDOPSIS THALIANA BOUND TO 13-OXO-9 (Z),11(E),15(Z)- REMARK 900 OCTADECATRIENOIC ACID. REMARK 900 RELATED ID: 5A4D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CHLOROPLASTIC GAMMA-KETOL REDUCTASE FROM REMARK 900 ARABIDOPSIS THALIANA BOUND TO 13KOTE AND NADP DBREF 5A3V A 1 329 UNP Q9SV68 QORH_ARATH 1 329 DBREF 5A3V B 1 329 UNP Q9SV68 QORH_ARATH 1 329 SEQRES 1 A 329 MET ALA GLY LYS LEU MET HIS ALA LEU GLN TYR ASN SER SEQRES 2 A 329 TYR GLY GLY GLY ALA ALA GLY LEU GLU HIS VAL GLN VAL SEQRES 3 A 329 PRO VAL PRO THR PRO LYS SER ASN GLU VAL CYS LEU LYS SEQRES 4 A 329 LEU GLU ALA THR SER LEU ASN PRO VAL ASP TRP LYS ILE SEQRES 5 A 329 GLN LYS GLY MET ILE ARG PRO PHE LEU PRO ARG LYS PHE SEQRES 6 A 329 PRO CYS ILE PRO ALA THR ASP VAL ALA GLY GLU VAL VAL SEQRES 7 A 329 GLU VAL GLY SER GLY VAL LYS ASN PHE LYS ALA GLY ASP SEQRES 8 A 329 LYS VAL VAL ALA VAL LEU SER HIS LEU GLY GLY GLY GLY SEQRES 9 A 329 LEU ALA GLU PHE ALA VAL ALA THR GLU LYS LEU THR VAL SEQRES 10 A 329 LYS ARG PRO GLN GLU VAL GLY ALA ALA GLU ALA ALA ALA SEQRES 11 A 329 LEU PRO VAL ALA GLY LEU THR ALA LEU GLN ALA LEU THR SEQRES 12 A 329 ASN PRO ALA GLY LEU LYS LEU ASP GLY THR GLY LYS LYS SEQRES 13 A 329 ALA ASN ILE LEU VAL THR ALA ALA SER GLY GLY VAL GLY SEQRES 14 A 329 HIS TYR ALA VAL GLN LEU ALA LYS LEU ALA ASN ALA HIS SEQRES 15 A 329 VAL THR ALA THR CYS GLY ALA ARG ASN ILE GLU PHE VAL SEQRES 16 A 329 LYS SER LEU GLY ALA ASP GLU VAL LEU ASP TYR LYS THR SEQRES 17 A 329 PRO GLU GLY ALA ALA LEU LYS SER PRO SER GLY LYS LYS SEQRES 18 A 329 TYR ASP ALA VAL VAL HIS CYS ALA ASN GLY ILE PRO PHE SEQRES 19 A 329 SER VAL PHE GLU PRO ASN LEU SER GLU ASN GLY LYS VAL SEQRES 20 A 329 ILE ASP ILE THR PRO GLY PRO ASN ALA MET TRP THR TYR SEQRES 21 A 329 ALA VAL LYS LYS ILE THR MET SER LYS LYS GLN LEU VAL SEQRES 22 A 329 PRO LEU LEU LEU ILE PRO LYS ALA GLU ASN LEU GLU PHE SEQRES 23 A 329 MET VAL ASN LEU VAL LYS GLU GLY LYS VAL LYS THR VAL SEQRES 24 A 329 ILE ASP SER LYS HIS PRO LEU SER LYS ALA GLU ASP ALA SEQRES 25 A 329 TRP ALA LYS SER ILE ASP GLY HIS ALA THR GLY LYS ILE SEQRES 26 A 329 ILE VAL GLU PRO SEQRES 1 B 329 MET ALA GLY LYS LEU MET HIS ALA LEU GLN TYR ASN SER SEQRES 2 B 329 TYR GLY GLY GLY ALA ALA GLY LEU GLU HIS VAL GLN VAL SEQRES 3 B 329 PRO VAL PRO THR PRO LYS SER ASN GLU VAL CYS LEU LYS SEQRES 4 B 329 LEU GLU ALA THR SER LEU ASN PRO VAL ASP TRP LYS ILE SEQRES 5 B 329 GLN LYS GLY MET ILE ARG PRO PHE LEU PRO ARG LYS PHE SEQRES 6 B 329 PRO CYS ILE PRO ALA THR ASP VAL ALA GLY GLU VAL VAL SEQRES 7 B 329 GLU VAL GLY SER GLY VAL LYS ASN PHE LYS ALA GLY ASP SEQRES 8 B 329 LYS VAL VAL ALA VAL LEU SER HIS LEU GLY GLY GLY GLY SEQRES 9 B 329 LEU ALA GLU PHE ALA VAL ALA THR GLU LYS LEU THR VAL SEQRES 10 B 329 LYS ARG PRO GLN GLU VAL GLY ALA ALA GLU ALA ALA ALA SEQRES 11 B 329 LEU PRO VAL ALA GLY LEU THR ALA LEU GLN ALA LEU THR SEQRES 12 B 329 ASN PRO ALA GLY LEU LYS LEU ASP GLY THR GLY LYS LYS SEQRES 13 B 329 ALA ASN ILE LEU VAL THR ALA ALA SER GLY GLY VAL GLY SEQRES 14 B 329 HIS TYR ALA VAL GLN LEU ALA LYS LEU ALA ASN ALA HIS SEQRES 15 B 329 VAL THR ALA THR CYS GLY ALA ARG ASN ILE GLU PHE VAL SEQRES 16 B 329 LYS SER LEU GLY ALA ASP GLU VAL LEU ASP TYR LYS THR SEQRES 17 B 329 PRO GLU GLY ALA ALA LEU LYS SER PRO SER GLY LYS LYS SEQRES 18 B 329 TYR ASP ALA VAL VAL HIS CYS ALA ASN GLY ILE PRO PHE SEQRES 19 B 329 SER VAL PHE GLU PRO ASN LEU SER GLU ASN GLY LYS VAL SEQRES 20 B 329 ILE ASP ILE THR PRO GLY PRO ASN ALA MET TRP THR TYR SEQRES 21 B 329 ALA VAL LYS LYS ILE THR MET SER LYS LYS GLN LEU VAL SEQRES 22 B 329 PRO LEU LEU LEU ILE PRO LYS ALA GLU ASN LEU GLU PHE SEQRES 23 B 329 MET VAL ASN LEU VAL LYS GLU GLY LYS VAL LYS THR VAL SEQRES 24 B 329 ILE ASP SER LYS HIS PRO LEU SER LYS ALA GLU ASP ALA SEQRES 25 B 329 TRP ALA LYS SER ILE ASP GLY HIS ALA THR GLY LYS ILE SEQRES 26 B 329 ILE VAL GLU PRO FORMUL 3 HOH *387(H2 O) HELIX 1 1 GLY A 17 LEU A 21 5 5 HELIX 2 2 ASN A 46 GLY A 55 1 10 HELIX 3 3 SER A 98 GLY A 101 5 4 HELIX 4 4 GLY A 124 ALA A 130 1 7 HELIX 5 5 LEU A 131 ASN A 144 1 14 HELIX 6 6 GLY A 166 ALA A 179 1 14 HELIX 7 7 GLY A 188 ARG A 190 5 3 HELIX 8 8 ASN A 191 LEU A 198 1 8 HELIX 9 9 THR A 208 LEU A 214 1 7 HELIX 10 10 PRO A 233 GLU A 238 1 6 HELIX 11 11 GLY A 253 MET A 267 1 15 HELIX 12 12 LYS A 280 GLU A 293 1 14 HELIX 13 13 LYS A 308 GLY A 319 1 12 HELIX 14 14 GLY B 17 LEU B 21 5 5 HELIX 15 15 ASN B 46 GLY B 55 1 10 HELIX 16 16 SER B 98 GLY B 101 5 4 HELIX 17 17 GLY B 124 ALA B 130 1 7 HELIX 18 18 LEU B 131 ASN B 144 1 14 HELIX 19 19 GLY B 166 ALA B 179 1 14 HELIX 20 20 GLY B 188 ARG B 190 5 3 HELIX 21 21 ASN B 191 LEU B 198 1 8 HELIX 22 22 THR B 208 LEU B 214 1 7 HELIX 23 23 PRO B 233 GLU B 238 1 6 HELIX 24 24 GLY B 253 MET B 267 1 15 HELIX 25 25 LYS B 280 GLU B 293 1 14 HELIX 26 26 LYS B 308 GLY B 319 1 12 SHEET 1 AA 2 LEU A 5 GLN A 10 0 SHEET 2 AA 2 GLU A 22 PRO A 27 -1 O GLU A 22 N GLN A 10 SHEET 1 AB 2 PHE A 108 THR A 112 0 SHEET 2 AB 2 GLU A 35 SER A 44 -1 O VAL A 36 N ALA A 111 SHEET 1 AC 6 THR A 116 LYS A 118 0 SHEET 2 AC 6 LYS A 92 VAL A 96 -1 O VAL A 94 N VAL A 117 SHEET 3 AC 6 ASP A 72 VAL A 80 -1 O VAL A 73 N ALA A 95 SHEET 4 AC 6 GLU A 35 SER A 44 -1 O CYS A 37 N VAL A 78 SHEET 5 AC 6 LYS A 324 GLU A 328 -1 O VAL A 327 N THR A 43 SHEET 6 AC 6 ILE A 300 PRO A 305 1 N ASP A 301 O LYS A 324 SHEET 1 AD 5 THR A 116 LYS A 118 0 SHEET 2 AD 5 LYS A 92 VAL A 96 -1 O VAL A 94 N VAL A 117 SHEET 3 AD 5 ASP A 72 VAL A 80 -1 O VAL A 73 N ALA A 95 SHEET 4 AD 5 GLU A 35 SER A 44 -1 O CYS A 37 N VAL A 78 SHEET 5 AD 5 PHE A 108 THR A 112 -1 O ALA A 109 N LEU A 38 SHEET 1 AE 6 GLU A 202 ASP A 205 0 SHEET 2 AE 6 HIS A 182 CYS A 187 1 O VAL A 183 N GLU A 202 SHEET 3 AE 6 ASN A 158 THR A 162 1 O ILE A 159 N THR A 184 SHEET 4 AE 6 TYR A 222 HIS A 227 1 N ASP A 223 O ASN A 158 SHEET 5 AE 6 LEU A 241 ILE A 250 1 N SER A 242 O TYR A 222 SHEET 6 AE 6 GLN A 271 LEU A 275 1 O GLN A 271 N VAL A 247 SHEET 1 BA 2 LEU B 5 GLN B 10 0 SHEET 2 BA 2 GLU B 22 PRO B 27 -1 O GLU B 22 N GLN B 10 SHEET 1 BB 2 PHE B 108 THR B 112 0 SHEET 2 BB 2 GLU B 35 SER B 44 -1 O VAL B 36 N ALA B 111 SHEET 1 BC 6 THR B 116 LYS B 118 0 SHEET 2 BC 6 LYS B 92 VAL B 96 -1 O VAL B 94 N VAL B 117 SHEET 3 BC 6 ASP B 72 VAL B 80 -1 O VAL B 73 N ALA B 95 SHEET 4 BC 6 GLU B 35 SER B 44 -1 O CYS B 37 N VAL B 78 SHEET 5 BC 6 LYS B 324 GLU B 328 -1 O VAL B 327 N THR B 43 SHEET 6 BC 6 ILE B 300 PRO B 305 1 N ASP B 301 O LYS B 324 SHEET 1 BD 5 THR B 116 LYS B 118 0 SHEET 2 BD 5 LYS B 92 VAL B 96 -1 O VAL B 94 N VAL B 117 SHEET 3 BD 5 ASP B 72 VAL B 80 -1 O VAL B 73 N ALA B 95 SHEET 4 BD 5 GLU B 35 SER B 44 -1 O CYS B 37 N VAL B 78 SHEET 5 BD 5 PHE B 108 THR B 112 -1 O ALA B 109 N LEU B 38 SHEET 1 BE 6 GLU B 202 ASP B 205 0 SHEET 2 BE 6 HIS B 182 CYS B 187 1 O VAL B 183 N GLU B 202 SHEET 3 BE 6 ASN B 158 THR B 162 1 O ILE B 159 N THR B 184 SHEET 4 BE 6 TYR B 222 HIS B 227 1 N ASP B 223 O ASN B 158 SHEET 5 BE 6 LEU B 241 ILE B 250 1 N SER B 242 O TYR B 222 SHEET 6 BE 6 GLN B 271 LEU B 275 1 O GLN B 271 N VAL B 247 CISPEP 1 ARG A 58 PRO A 59 0 -1.60 CISPEP 2 ARG A 58 PRO A 59 0 -6.60 CISPEP 3 LEU A 61 PRO A 62 0 -7.11 CISPEP 4 PHE A 65 PRO A 66 0 -0.92 CISPEP 5 GLU A 328 PRO A 329 0 -4.45 CISPEP 6 ARG B 58 PRO B 59 0 2.18 CISPEP 7 LEU B 61 PRO B 62 0 -5.36 CISPEP 8 PHE B 65 PRO B 66 0 1.62 CISPEP 9 GLU B 328 PRO B 329 0 -7.96 CRYST1 44.720 142.650 209.890 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004764 0.00000 MTRIX1 1 0.125100 -0.507900 -0.852300 -41.39000 1 MTRIX2 1 -0.499800 -0.774400 0.388000 -31.20000 1 MTRIX3 1 -0.857100 0.377400 -0.350700 -36.24000 1