HEADER TRANSFERASE 05-JUN-15 5A46 TITLE FGFR1 IN COMPLEX WITH DOVITINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 1 (FMS-RELATED TYROSINE COMPND 3 KINASE 2, PFEIFFER SYNDROME), ISOFORM CRA_B; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: FGFR1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, KINASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KLEIN,N.VAJPAI,J.J.PHILLIPS,G.DAVIES,G.A.HOLDGATE,C.PHILLIPS, AUTHOR 2 J.A.TUCKER,R.A.NORMAN,A.S.SCOTT,D.R.HIGAZI,D.LOWE,G.S.THOMPSON, AUTHOR 3 A.L.BREEZE REVDAT 1 05-AUG-15 5A46 0 JRNL AUTH T.KLEIN,N.VAJPAI,J.J.PHILLIPS,G.DAVIES,G.A.HOLDGATE, JRNL AUTH 2 C.PHILLIPS,J.A.TUCKER,R.A.NORMAN,A.D.SCOTT,D.R.HIGAZI, JRNL AUTH 3 D.LOWE,G.S.THOMPSON,A.L.BREEZE JRNL TITL STRUCTURAL AND DYNAMIC INSIGHTS INTO THE ENERGETICS OF JRNL TITL 2 ACTIVATION LOOP REARRANGEMENT IN FGFR1 KINASE. JRNL REF NAT.COMMUN. V. 6 7877 2015 JRNL REFN ISSN 2041-1723 JRNL PMID 26203596 JRNL DOI 10.1038/NCOMMS8877 REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.80 REMARK 3 NUMBER OF REFLECTIONS : 21565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.1819 REMARK 3 R VALUE (WORKING SET) : 0.1784 REMARK 3 FREE R VALUE : 0.2459 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.18 REMARK 3 FREE R VALUE TEST SET COUNT : 1117 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.80 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2864 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2114 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2732 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE : 0.2847 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.61 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4453 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.7596 REMARK 3 B22 (A**2) : -10.3963 REMARK 3 B33 (A**2) : 8.6367 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : -1.0341 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.411 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.731 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.305 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.683 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.306 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.9513 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.9073 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4685 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 6403 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 1571 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 103 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 673 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4685 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 594 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5298 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.77 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.97 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 81.8633 -2.4112 18.1916 REMARK 3 T TENSOR REMARK 3 T11: -0.3139 T22: 0.4734 REMARK 3 T33: -0.4096 T12: 0.0583 REMARK 3 T13: 0.0303 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 3.5953 L22: 0.5574 REMARK 3 L33: 2.4929 L12: 0.0596 REMARK 3 L13: -0.6970 L23: -0.3304 REMARK 3 S TENSOR REMARK 3 S11: 0.2279 S12: 0.2157 S13: 0.2740 REMARK 3 S21: -0.0878 S22: -0.0749 S23: 0.0630 REMARK 3 S31: -0.1230 S32: 0.1129 S33: -0.1530 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 34.6714 1.6063 14.3040 REMARK 3 T TENSOR REMARK 3 T11: -0.3277 T22: 0.4856 REMARK 3 T33: -0.4276 T12: 0.1286 REMARK 3 T13: -0.0937 T23: -0.0740 REMARK 3 L TENSOR REMARK 3 L11: 4.9132 L22: 1.5740 REMARK 3 L33: 1.8479 L12: -1.5784 REMARK 3 L13: 0.3927 L23: 0.3218 REMARK 3 S TENSOR REMARK 3 S11: 0.5111 S12: 0.7006 S13: -0.5285 REMARK 3 S21: -0.1126 S22: -0.5392 S23: 0.2333 REMARK 3 S31: 0.2646 S32: 0.1266 S33: 0.0281 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-15. REMARK 100 THE PDBE ID CODE IS EBI-63982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21568 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.63 REMARK 200 RESOLUTION RANGE LOW (A) : 62.75 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.4 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 20MM AMMONIUM REMARK 280 SULPHATE, 20% ETHYLENE GLYCOL, 100MM PCTP PH6.7. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 104.90000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 104.90000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 437 REMARK 465 ASN A 438 REMARK 465 SER A 439 REMARK 465 GLY A 440 REMARK 465 VAL A 441 REMARK 465 LEU A 442 REMARK 465 LEU A 443 REMARK 465 VAL A 444 REMARK 465 ARG A 445 REMARK 465 PRO A 446 REMARK 465 SER A 447 REMARK 465 ARG A 448 REMARK 465 LEU A 449 REMARK 465 SER A 450 REMARK 465 SER A 451 REMARK 465 SER A 452 REMARK 465 GLY A 453 REMARK 465 THR A 454 REMARK 465 PRO A 455 REMARK 465 MET A 456 REMARK 465 LEU A 457 REMARK 465 ALA A 458 REMARK 465 GLY A 459 REMARK 465 VAL A 460 REMARK 465 SER A 461 REMARK 465 GLU A 462 REMARK 465 TYR A 463 REMARK 465 GLU A 582 REMARK 465 TYR A 583 REMARK 465 CYS A 584 REMARK 465 TYR A 585 REMARK 465 ASN A 586 REMARK 465 PRO A 587 REMARK 465 SER A 588 REMARK 465 HIS A 589 REMARK 465 ASN A 590 REMARK 465 PRO A 591 REMARK 465 ILE A 648 REMARK 465 HIS A 649 REMARK 465 HIS A 650 REMARK 465 LEU A 767 REMARK 465 ASP A 768 REMARK 465 LEU A 769 REMARK 465 SER A 770 REMARK 465 MET A 771 REMARK 465 PRO A 772 REMARK 465 LEU A 773 REMARK 465 ASP A 774 REMARK 465 GLN A 775 REMARK 465 TYR A 776 REMARK 465 SER A 777 REMARK 465 PRO A 778 REMARK 465 SER A 779 REMARK 465 PHE A 780 REMARK 465 PRO A 781 REMARK 465 ASP A 782 REMARK 465 THR A 783 REMARK 465 ARG A 784 REMARK 465 SER A 785 REMARK 465 SER A 786 REMARK 465 THR A 787 REMARK 465 CYS A 788 REMARK 465 SER A 789 REMARK 465 SER A 790 REMARK 465 GLY A 791 REMARK 465 GLU A 792 REMARK 465 ASP A 793 REMARK 465 SER A 794 REMARK 465 VAL A 795 REMARK 465 PHE A 796 REMARK 465 SER A 797 REMARK 465 HIS A 798 REMARK 465 GLU A 799 REMARK 465 PRO A 800 REMARK 465 LEU A 801 REMARK 465 PRO A 802 REMARK 465 GLU A 803 REMARK 465 GLU A 804 REMARK 465 PRO A 805 REMARK 465 CYS A 806 REMARK 465 LEU A 807 REMARK 465 PRO A 808 REMARK 465 ARG A 809 REMARK 465 HIS A 810 REMARK 465 PRO A 811 REMARK 465 ALA A 812 REMARK 465 GLN A 813 REMARK 465 LEU A 814 REMARK 465 ALA A 815 REMARK 465 ASN A 816 REMARK 465 GLY A 817 REMARK 465 GLY A 818 REMARK 465 LEU A 819 REMARK 465 LYS A 820 REMARK 465 ARG A 821 REMARK 465 ARG A 822 REMARK 465 MET B 437 REMARK 465 ASN B 438 REMARK 465 SER B 439 REMARK 465 GLY B 440 REMARK 465 VAL B 441 REMARK 465 LEU B 442 REMARK 465 LEU B 443 REMARK 465 VAL B 444 REMARK 465 ARG B 445 REMARK 465 PRO B 446 REMARK 465 SER B 447 REMARK 465 ARG B 448 REMARK 465 LEU B 449 REMARK 465 SER B 450 REMARK 465 SER B 451 REMARK 465 SER B 452 REMARK 465 GLY B 453 REMARK 465 THR B 454 REMARK 465 PRO B 455 REMARK 465 MET B 456 REMARK 465 LEU B 457 REMARK 465 ASP B 503 REMARK 465 LYS B 504 REMARK 465 GLY B 580 REMARK 465 LEU B 581 REMARK 465 GLU B 582 REMARK 465 TYR B 583 REMARK 465 CYS B 584 REMARK 465 TYR B 585 REMARK 465 ASN B 586 REMARK 465 PRO B 587 REMARK 465 SER B 588 REMARK 465 LEU B 767 REMARK 465 ASP B 768 REMARK 465 LEU B 769 REMARK 465 SER B 770 REMARK 465 MET B 771 REMARK 465 PRO B 772 REMARK 465 LEU B 773 REMARK 465 ASP B 774 REMARK 465 GLN B 775 REMARK 465 TYR B 776 REMARK 465 SER B 777 REMARK 465 PRO B 778 REMARK 465 SER B 779 REMARK 465 PHE B 780 REMARK 465 PRO B 781 REMARK 465 ASP B 782 REMARK 465 THR B 783 REMARK 465 ARG B 784 REMARK 465 SER B 785 REMARK 465 SER B 786 REMARK 465 THR B 787 REMARK 465 CYS B 788 REMARK 465 SER B 789 REMARK 465 SER B 790 REMARK 465 GLY B 791 REMARK 465 GLU B 792 REMARK 465 ASP B 793 REMARK 465 SER B 794 REMARK 465 VAL B 795 REMARK 465 PHE B 796 REMARK 465 SER B 797 REMARK 465 HIS B 798 REMARK 465 GLU B 799 REMARK 465 PRO B 800 REMARK 465 LEU B 801 REMARK 465 PRO B 802 REMARK 465 GLU B 803 REMARK 465 GLU B 804 REMARK 465 PRO B 805 REMARK 465 CYS B 806 REMARK 465 LEU B 807 REMARK 465 PRO B 808 REMARK 465 ARG B 809 REMARK 465 HIS B 810 REMARK 465 PRO B 811 REMARK 465 ALA B 812 REMARK 465 GLN B 813 REMARK 465 LEU B 814 REMARK 465 ALA B 815 REMARK 465 ASN B 816 REMARK 465 GLY B 817 REMARK 465 GLY B 818 REMARK 465 LEU B 819 REMARK 465 LYS B 820 REMARK 465 ARG B 821 REMARK 465 ARG B 822 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 464 CG CD OE1 OE2 REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 CYS A 488 SG REMARK 470 PHE A 489 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 501 CG OD1 OD2 REMARK 470 LYS A 502 CG CD CE NZ REMARK 470 ASP A 503 CG OD1 OD2 REMARK 470 ARG A 507 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 517 CG CD CE NZ REMARK 470 GLU A 522 CG CD OE1 OE2 REMARK 470 LYS A 523 CG CD CE NZ REMARK 470 LYS A 540 CG CD CE NZ REMARK 470 LYS A 542 CG CD CE NZ REMARK 470 GLU A 592 CG CD OE1 OE2 REMARK 470 GLU A 593 CG CD OE1 OE2 REMARK 470 ARG A 646 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 647 CG OD1 OD2 REMARK 470 ILE A 651 CG1 CG2 CD1 REMARK 470 LYS A 655 CG CD CE NZ REMARK 470 LYS A 656 CG CD CE NZ REMARK 470 ARG A 675 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 707 CG CD OE1 OE2 REMARK 470 LYS A 711 CG CD CE NZ REMARK 470 LYS A 714 CD CE NZ REMARK 470 TYR A 766 CA C O CB CG CD1 CD2 CE1 REMARK 470 TYR A 766 CE2 CZ OH REMARK 470 VAL B 460 CG1 CG2 REMARK 470 LYS B 482 CG CD CE NZ REMARK 470 CYS B 488 SG REMARK 470 ASP B 501 CG OD1 OD2 REMARK 470 LYS B 502 CG CD CE NZ REMARK 470 ASN B 506 CG OD1 ND2 REMARK 470 ARG B 507 CG CD NE CZ NH1 NH2 REMARK 470 THR B 509 OG1 CG2 REMARK 470 LYS B 510 CD CE NZ REMARK 470 LYS B 517 CD CE NZ REMARK 470 GLU B 522 CG CD OE1 OE2 REMARK 470 LYS B 523 CD CE NZ REMARK 470 LYS B 540 CD CE NZ REMARK 470 LYS B 542 CG CD CE NZ REMARK 470 HIS B 589 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 590 CG OD1 ND2 REMARK 470 GLU B 592 CG CD OE1 OE2 REMARK 470 GLU B 593 CG CD OE1 OE2 REMARK 470 LYS B 618 CG CD CE NZ REMARK 470 GLU B 633 CG CD OE1 OE2 REMARK 470 ARG B 646 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 647 CG OD1 OD2 REMARK 470 ILE B 648 CG1 CG2 CD1 REMARK 470 HIS B 649 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 650 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 651 CG1 CG2 CD1 REMARK 470 LYS B 655 CD CE NZ REMARK 470 LYS B 656 CD CE NZ REMARK 470 GLU B 707 CG CD OE1 OE2 REMARK 470 LYS B 711 CD CE NZ REMARK 470 LYS B 714 CE NZ REMARK 470 LYS B 721 CE NZ REMARK 470 GLU B 728 CG CD OE1 OE2 REMARK 470 ASN B 763 CG OD1 ND2 REMARK 470 GLN B 764 CG CD OE1 NE2 REMARK 470 GLU B 765 CG CD OE1 OE2 REMARK 470 TYR B 766 CA C O CB CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2094 O HOH A 2094 2656 0.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 519 38.74 -86.56 REMARK 500 ARG A 622 -11.29 70.95 REMARK 500 ASP A 623 41.16 -145.64 REMARK 500 TRP A 737 30.94 -98.60 REMARK 500 VAL B 460 -36.46 71.88 REMARK 500 ASP B 468 85.26 -150.31 REMARK 500 LYS B 482 130.94 -38.50 REMARK 500 HIS B 541 149.43 -176.51 REMARK 500 ASN B 543 31.82 -89.10 REMARK 500 ASP B 554 64.73 39.06 REMARK 500 ARG B 622 -14.20 73.28 REMARK 500 ASP B 623 52.07 -144.47 REMARK 500 HIS B 649 146.80 83.73 REMARK 500 TYR B 701 65.19 39.17 REMARK 500 ASN B 724 67.51 73.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1766 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1766 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1767 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1768 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 38O A1769 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 38O B1767 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1770 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1768 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1771 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A4C RELATED DB: PDB REMARK 900 FGFR1 LIGAND COMPLEX DBREF 5A46 A 437 822 UNP D3DSX2 D3DSX2_HUMAN 1 386 DBREF 5A46 B 437 822 UNP D3DSX2 D3DSX2_HUMAN 1 386 SEQRES 1 A 386 MET ASN SER GLY VAL LEU LEU VAL ARG PRO SER ARG LEU SEQRES 2 A 386 SER SER SER GLY THR PRO MET LEU ALA GLY VAL SER GLU SEQRES 3 A 386 TYR GLU LEU PRO GLU ASP PRO ARG TRP GLU LEU PRO ARG SEQRES 4 A 386 ASP ARG LEU VAL LEU GLY LYS PRO LEU GLY GLU GLY CYS SEQRES 5 A 386 PHE GLY GLN VAL VAL LEU ALA GLU ALA ILE GLY LEU ASP SEQRES 6 A 386 LYS ASP LYS PRO ASN ARG VAL THR LYS VAL ALA VAL LYS SEQRES 7 A 386 MET LEU LYS SER ASP ALA THR GLU LYS ASP LEU SER ASP SEQRES 8 A 386 LEU ILE SER GLU MET GLU MET MET LYS MET ILE GLY LYS SEQRES 9 A 386 HIS LYS ASN ILE ILE ASN LEU LEU GLY ALA CYS THR GLN SEQRES 10 A 386 ASP GLY PRO LEU TYR VAL ILE VAL GLU TYR ALA SER LYS SEQRES 11 A 386 GLY ASN LEU ARG GLU TYR LEU GLN ALA ARG ARG PRO PRO SEQRES 12 A 386 GLY LEU GLU TYR CYS TYR ASN PRO SER HIS ASN PRO GLU SEQRES 13 A 386 GLU GLN LEU SER SER LYS ASP LEU VAL SER CYS ALA TYR SEQRES 14 A 386 GLN VAL ALA ARG GLY MET GLU TYR LEU ALA SER LYS LYS SEQRES 15 A 386 CYS ILE HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL SEQRES 16 A 386 THR GLU ASP ASN VAL MET LYS ILE ALA ASP PHE GLY LEU SEQRES 17 A 386 ALA ARG ASP ILE HIS HIS ILE ASP TYR TYR LYS LYS THR SEQRES 18 A 386 THR ASN GLY ARG LEU PRO VAL LYS TRP MET ALA PRO GLU SEQRES 19 A 386 ALA LEU PHE ASP ARG ILE TYR THR HIS GLN SER ASP VAL SEQRES 20 A 386 TRP SER PHE GLY VAL LEU LEU TRP GLU ILE PHE THR LEU SEQRES 21 A 386 GLY GLY SER PRO TYR PRO GLY VAL PRO VAL GLU GLU LEU SEQRES 22 A 386 PHE LYS LEU LEU LYS GLU GLY HIS ARG MET ASP LYS PRO SEQRES 23 A 386 SER ASN CYS THR ASN GLU LEU TYR MET MET MET ARG ASP SEQRES 24 A 386 CYS TRP HIS ALA VAL PRO SER GLN ARG PRO THR PHE LYS SEQRES 25 A 386 GLN LEU VAL GLU ASP LEU ASP ARG ILE VAL ALA LEU THR SEQRES 26 A 386 SER ASN GLN GLU TYR LEU ASP LEU SER MET PRO LEU ASP SEQRES 27 A 386 GLN TYR SER PRO SER PHE PRO ASP THR ARG SER SER THR SEQRES 28 A 386 CYS SER SER GLY GLU ASP SER VAL PHE SER HIS GLU PRO SEQRES 29 A 386 LEU PRO GLU GLU PRO CYS LEU PRO ARG HIS PRO ALA GLN SEQRES 30 A 386 LEU ALA ASN GLY GLY LEU LYS ARG ARG SEQRES 1 B 386 MET ASN SER GLY VAL LEU LEU VAL ARG PRO SER ARG LEU SEQRES 2 B 386 SER SER SER GLY THR PRO MET LEU ALA GLY VAL SER GLU SEQRES 3 B 386 TYR GLU LEU PRO GLU ASP PRO ARG TRP GLU LEU PRO ARG SEQRES 4 B 386 ASP ARG LEU VAL LEU GLY LYS PRO LEU GLY GLU GLY CYS SEQRES 5 B 386 PHE GLY GLN VAL VAL LEU ALA GLU ALA ILE GLY LEU ASP SEQRES 6 B 386 LYS ASP LYS PRO ASN ARG VAL THR LYS VAL ALA VAL LYS SEQRES 7 B 386 MET LEU LYS SER ASP ALA THR GLU LYS ASP LEU SER ASP SEQRES 8 B 386 LEU ILE SER GLU MET GLU MET MET LYS MET ILE GLY LYS SEQRES 9 B 386 HIS LYS ASN ILE ILE ASN LEU LEU GLY ALA CYS THR GLN SEQRES 10 B 386 ASP GLY PRO LEU TYR VAL ILE VAL GLU TYR ALA SER LYS SEQRES 11 B 386 GLY ASN LEU ARG GLU TYR LEU GLN ALA ARG ARG PRO PRO SEQRES 12 B 386 GLY LEU GLU TYR CYS TYR ASN PRO SER HIS ASN PRO GLU SEQRES 13 B 386 GLU GLN LEU SER SER LYS ASP LEU VAL SER CYS ALA TYR SEQRES 14 B 386 GLN VAL ALA ARG GLY MET GLU TYR LEU ALA SER LYS LYS SEQRES 15 B 386 CYS ILE HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL SEQRES 16 B 386 THR GLU ASP ASN VAL MET LYS ILE ALA ASP PHE GLY LEU SEQRES 17 B 386 ALA ARG ASP ILE HIS HIS ILE ASP TYR TYR LYS LYS THR SEQRES 18 B 386 THR ASN GLY ARG LEU PRO VAL LYS TRP MET ALA PRO GLU SEQRES 19 B 386 ALA LEU PHE ASP ARG ILE TYR THR HIS GLN SER ASP VAL SEQRES 20 B 386 TRP SER PHE GLY VAL LEU LEU TRP GLU ILE PHE THR LEU SEQRES 21 B 386 GLY GLY SER PRO TYR PRO GLY VAL PRO VAL GLU GLU LEU SEQRES 22 B 386 PHE LYS LEU LEU LYS GLU GLY HIS ARG MET ASP LYS PRO SEQRES 23 B 386 SER ASN CYS THR ASN GLU LEU TYR MET MET MET ARG ASP SEQRES 24 B 386 CYS TRP HIS ALA VAL PRO SER GLN ARG PRO THR PHE LYS SEQRES 25 B 386 GLN LEU VAL GLU ASP LEU ASP ARG ILE VAL ALA LEU THR SEQRES 26 B 386 SER ASN GLN GLU TYR LEU ASP LEU SER MET PRO LEU ASP SEQRES 27 B 386 GLN TYR SER PRO SER PHE PRO ASP THR ARG SER SER THR SEQRES 28 B 386 CYS SER SER GLY GLU ASP SER VAL PHE SER HIS GLU PRO SEQRES 29 B 386 LEU PRO GLU GLU PRO CYS LEU PRO ARG HIS PRO ALA GLN SEQRES 30 B 386 LEU ALA ASN GLY GLY LEU LYS ARG ARG HET EDO A1766 4 HET EDO B1766 4 HET EDO A1767 4 HET EDO A1768 4 HET 38O A1769 50 HET 38O B1767 50 HET SO4 A1770 5 HET SO4 B1768 5 HET SO4 A1771 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM 38O 4-AMINO-5-FLUORO-3-[5-(4-METHYLPIPERAZIN-1- HETNAM 2 38O YL)-1H-BENZIMIDAZOL-2-YL]QUINOLIN-2(1H)-ONE HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN 38O DOVITINIB FORMUL 3 EDO 4(C2 H6 O2) FORMUL 4 38O 2(C21 H21 F N6 O) FORMUL 5 SO4 3(O4 S 2-) FORMUL 6 HOH *226(H2 O) HELIX 1 1 PRO A 474 ASP A 476 5 3 HELIX 2 2 THR A 521 GLY A 539 1 19 HELIX 3 3 ASN A 568 ALA A 575 1 8 HELIX 4 4 SER A 596 LYS A 617 1 22 HELIX 5 5 ALA A 625 ARG A 627 5 3 HELIX 6 6 LEU A 662 MET A 667 5 6 HELIX 7 7 ALA A 668 ARG A 675 1 8 HELIX 8 8 THR A 678 THR A 695 1 18 HELIX 9 9 PRO A 705 GLU A 715 1 11 HELIX 10 10 THR A 726 TRP A 737 1 12 HELIX 11 11 VAL A 740 ARG A 744 5 5 HELIX 12 12 THR A 746 THR A 761 1 16 HELIX 13 13 PRO B 474 ASP B 476 5 3 HELIX 14 14 THR B 521 GLY B 539 1 19 HELIX 15 15 ASN B 568 ARG B 576 1 9 HELIX 16 16 ASN B 590 GLN B 594 5 5 HELIX 17 17 SER B 596 LYS B 617 1 22 HELIX 18 18 ALA B 625 ARG B 627 5 3 HELIX 19 19 LEU B 662 MET B 667 5 6 HELIX 20 20 ALA B 668 ARG B 675 1 8 HELIX 21 21 THR B 678 THR B 695 1 18 HELIX 22 22 PRO B 705 GLU B 715 1 11 HELIX 23 23 THR B 726 TRP B 737 1 12 HELIX 24 24 VAL B 740 ARG B 744 5 5 HELIX 25 25 THR B 746 ALA B 759 1 14 SHEET 1 AA 5 LEU A 478 GLY A 485 0 SHEET 2 AA 5 GLN A 491 ILE A 498 -1 O VAL A 492 N LEU A 484 SHEET 3 AA 5 VAL A 508 MET A 515 -1 O THR A 509 N ALA A 497 SHEET 4 AA 5 TYR A 558 VAL A 561 -1 O VAL A 559 N LYS A 514 SHEET 5 AA 5 LEU A 547 CYS A 551 -1 N LEU A 548 O ILE A 560 SHEET 1 AB 2 VAL A 629 VAL A 631 0 SHEET 2 AB 2 MET A 637 ILE A 639 -1 O LYS A 638 N LEU A 630 SHEET 1 BA 5 LEU B 478 GLU B 486 0 SHEET 2 BA 5 GLY B 490 ILE B 498 -1 O VAL B 492 N LEU B 484 SHEET 3 BA 5 VAL B 508 LEU B 516 -1 O THR B 509 N ALA B 497 SHEET 4 BA 5 TYR B 558 GLU B 562 -1 O VAL B 559 N LYS B 514 SHEET 5 BA 5 LEU B 547 CYS B 551 -1 N LEU B 548 O ILE B 560 SHEET 1 BB 2 VAL B 629 VAL B 631 0 SHEET 2 BB 2 MET B 637 ILE B 639 -1 O LYS B 638 N LEU B 630 CISPEP 1 GLY A 487 CYS A 488 0 7.40 CISPEP 2 ASP A 503 LYS A 504 0 9.33 CISPEP 3 GLY A 580 LEU A 581 0 -1.12 CISPEP 4 ILE B 648 HIS B 649 0 5.80 CISPEP 5 HIS B 649 HIS B 650 0 4.42 SITE 1 AC1 6 GLU A 531 MET A 535 ASP A 641 PHE A 642 SITE 2 AC1 6 GLY A 643 38O A1769 SITE 1 AC2 6 GLU B 531 MET B 535 ASP B 641 PHE B 642 SITE 2 AC2 6 GLY B 643 38O B1767 SITE 1 AC3 6 TRP A 684 TYR A 701 ARG A 718 MET A 719 SITE 2 AC3 6 TRP A 737 HOH A2072 SITE 1 AC4 5 ALA A 615 THR A 746 PHE A 747 LYS A 748 SITE 2 AC4 5 HOH A2079 SITE 1 AC5 10 LEU A 484 VAL A 492 ALA A 512 VAL A 561 SITE 2 AC5 10 GLU A 562 TYR A 563 ALA A 564 GLY A 567 SITE 3 AC5 10 LEU A 630 EDO A1766 SITE 1 AC6 10 LEU B 484 VAL B 492 ALA B 512 VAL B 561 SITE 2 AC6 10 GLU B 562 TYR B 563 ALA B 564 GLY B 567 SITE 3 AC6 10 LEU B 630 EDO B1766 SITE 1 AC7 2 LYS A 540 LYS A 618 SITE 1 AC8 7 ARG B 570 ARG B 627 THR B 657 ASN B 659 SITE 2 AC8 7 ARG B 661 HOH B2056 HOH B2094 SITE 1 AC9 7 ARG A 570 ARG A 627 THR A 657 ASN A 659 SITE 2 AC9 7 ARG A 661 HOH A2059 HOH A2124 CRYST1 209.800 56.830 65.740 90.00 107.36 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004766 0.000000 0.001490 0.00000 SCALE2 0.000000 0.017596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015937 0.00000