HEADER LIGASE 11-JUN-15 5A4P TITLE STRUCTURE OF UBE2Z PROVIDES FUNCTIONAL INSIGHT INTO SPECIFICITY IN THE TITLE 2 FAT10 CONJUGATION MACHINERY COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 Z; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBA6-SPECIFIC E2 CONJUGATING ENZYME 1, USE1, UBIQUITIN COMPND 5 CARRIER PROTEIN Z, UBIQUITIN-PROTEIN LIGASE Z, UBE2Z; COMPND 6 EC: 6.3.2.19; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETNKI-HIS-3C-LIC-KAN KEYWDS LIGASE, E2 ENZYME, FAT10 CONJUGATION, UBIQUITIN CONJUGATION EXPDTA X-RAY DIFFRACTION AUTHOR J.SCHELPE,D.MONTE,F.DEWITTE,T.K.SIXMA,P.RUCKTOOA REVDAT 4 10-JAN-24 5A4P 1 REMARK REVDAT 3 20-JAN-16 5A4P 1 JRNL REVDAT 2 25-NOV-15 5A4P 1 JRNL REVDAT 1 18-NOV-15 5A4P 0 JRNL AUTH J.SCHELPE,D.MONTE,F.DEWITTE,T.K.SIXMA,P.RUCKTOOA JRNL TITL STRUCTURE OF UBE2Z PROVIDES FUNCTIONAL INSIGHT INTO JRNL TITL 2 SPECIFICITY IN THE FAT10 CONJUGATION MACHINERY JRNL REF J.BIOL.CHEM. V. 291 630 2016 JRNL REFN ISSN 0021-9258 JRNL PMID 26555268 JRNL DOI 10.1074/JBC.M115.671545 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 16612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 816 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.25 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.25 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2960 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2608 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2807 REMARK 3 BIN R VALUE (WORKING SET) : 0.2575 REMARK 3 BIN FREE R VALUE : 0.3213 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.17 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1835 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.99510 REMARK 3 B22 (A**2) : 5.19720 REMARK 3 B33 (A**2) : 7.79790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.425 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.229 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.197 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.227 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.198 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1936 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2615 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 882 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 43 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 284 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1936 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 237 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2173 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.94 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.14 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 18.1054 22.8326 121.4250 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: -0.3040 REMARK 3 T33: -0.3040 T12: -0.1050 REMARK 3 T13: -0.0341 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 0.9913 L22: 2.9677 REMARK 3 L33: 3.0124 L12: -1.0459 REMARK 3 L13: -0.5264 L23: -0.1666 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.0913 S13: 0.1740 REMARK 3 S21: 0.0638 S22: -0.0706 S23: -0.0220 REMARK 3 S31: 0.0960 S32: -0.1028 S33: 0.0506 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 5A4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1290064009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03679 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16612 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 38.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1X23 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% (W/V) PEG1500, 0.1M MMT PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.54500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.54500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 PRO A 19 REMARK 465 GLY A 20 REMARK 465 ALA A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 VAL A 24 REMARK 465 ALA A 25 REMARK 465 GLY A 26 REMARK 465 VAL A 27 REMARK 465 VAL A 28 REMARK 465 GLY A 29 REMARK 465 VAL A 30 REMARK 465 SER A 31 REMARK 465 GLY A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 GLY A 36 REMARK 465 PHE A 37 REMARK 465 GLY A 38 REMARK 465 PRO A 39 REMARK 465 PRO A 40 REMARK 465 PHE A 41 REMARK 465 LEU A 42 REMARK 465 PRO A 43 REMARK 465 ASP A 44 REMARK 465 VAL A 45 REMARK 465 TRP A 46 REMARK 465 ALA A 47 REMARK 465 ALA A 48 REMARK 465 ALA A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 ALA A 52 REMARK 465 GLY A 53 REMARK 465 GLY A 54 REMARK 465 ALA A 55 REMARK 465 GLY A 56 REMARK 465 GLY A 57 REMARK 465 PRO A 58 REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 GLY A 61 REMARK 465 LEU A 62 REMARK 465 ALA A 63 REMARK 465 PRO A 64 REMARK 465 LEU A 65 REMARK 465 PRO A 66 REMARK 465 GLY A 67 REMARK 465 LEU A 68 REMARK 465 PRO A 69 REMARK 465 PRO A 70 REMARK 465 SER A 71 REMARK 465 ALA A 72 REMARK 465 ALA A 73 REMARK 465 ALA A 74 REMARK 465 HIS A 75 REMARK 465 GLY A 76 REMARK 465 ALA A 77 REMARK 465 ALA A 78 REMARK 465 LEU A 79 REMARK 465 LEU A 80 REMARK 465 SER A 81 REMARK 465 HIS A 82 REMARK 465 TRP A 83 REMARK 465 ASP A 84 REMARK 465 PRO A 85 REMARK 465 THR A 86 REMARK 465 LEU A 87 REMARK 465 SER A 88 REMARK 465 SER A 89 REMARK 465 ASP A 90 REMARK 465 TRP A 91 REMARK 465 ASP A 92 REMARK 465 GLY A 93 REMARK 465 GLU A 94 REMARK 465 ARG A 95 REMARK 465 THR A 96 REMARK 465 ALA A 97 REMARK 465 PRO A 98 REMARK 465 GLN A 99 REMARK 465 LEU A 328 REMARK 465 HIS A 329 REMARK 465 ASN A 330 REMARK 465 GLU A 331 REMARK 465 ASN A 332 REMARK 465 ALA A 333 REMARK 465 GLU A 334 REMARK 465 MET A 335 REMARK 465 ASP A 336 REMARK 465 SER A 337 REMARK 465 ASP A 338 REMARK 465 SER A 339 REMARK 465 SER A 340 REMARK 465 SER A 341 REMARK 465 SER A 342 REMARK 465 GLY A 343 REMARK 465 THR A 344 REMARK 465 GLU A 345 REMARK 465 THR A 346 REMARK 465 ASP A 347 REMARK 465 LEU A 348 REMARK 465 HIS A 349 REMARK 465 GLY A 350 REMARK 465 SER A 351 REMARK 465 LEU A 352 REMARK 465 ARG A 353 REMARK 465 VAL A 354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 327 CA C O CB CG CD NE REMARK 470 ARG A 327 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 126 -60.14 -97.01 REMARK 500 PRO A 159 31.70 -97.12 REMARK 500 VAL A 253 -70.24 -111.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1334 DBREF 5A4P A 1 354 UNP Q9H832 UBE2Z_HUMAN 1 354 SEQRES 1 A 354 MET ALA GLU SER PRO THR GLU GLU ALA ALA THR ALA GLY SEQRES 2 A 354 ALA GLY ALA ALA GLY PRO GLY ALA SER SER VAL ALA GLY SEQRES 3 A 354 VAL VAL GLY VAL SER GLY SER GLY GLY GLY PHE GLY PRO SEQRES 4 A 354 PRO PHE LEU PRO ASP VAL TRP ALA ALA ALA ALA ALA ALA SEQRES 5 A 354 GLY GLY ALA GLY GLY PRO GLY SER GLY LEU ALA PRO LEU SEQRES 6 A 354 PRO GLY LEU PRO PRO SER ALA ALA ALA HIS GLY ALA ALA SEQRES 7 A 354 LEU LEU SER HIS TRP ASP PRO THR LEU SER SER ASP TRP SEQRES 8 A 354 ASP GLY GLU ARG THR ALA PRO GLN CYS LEU LEU ARG ILE SEQRES 9 A 354 LYS ARG ASP ILE MET SER ILE TYR LYS GLU PRO PRO PRO SEQRES 10 A 354 GLY MET PHE VAL VAL PRO ASP THR VAL ASP MET THR LYS SEQRES 11 A 354 ILE HIS ALA LEU ILE THR GLY PRO PHE ASP THR PRO TYR SEQRES 12 A 354 GLU GLY GLY PHE PHE LEU PHE VAL PHE ARG CYS PRO PRO SEQRES 13 A 354 ASP TYR PRO ILE HIS PRO PRO ARG VAL LYS LEU MET THR SEQRES 14 A 354 THR GLY ASN ASN THR VAL ARG PHE ASN PRO ASN PHE TYR SEQRES 15 A 354 ARG ASN GLY LYS VAL CYS LEU SER ILE LEU GLY THR TRP SEQRES 16 A 354 THR GLY PRO ALA TRP SER PRO ALA GLN SER ILE SER SER SEQRES 17 A 354 VAL LEU ILE SER ILE GLN SER LEU MET THR GLU ASN PRO SEQRES 18 A 354 TYR HIS ASN GLU PRO GLY PHE GLU GLN GLU ARG HIS PRO SEQRES 19 A 354 GLY ASP SER LYS ASN TYR ASN GLU CYS ILE ARG HIS GLU SEQRES 20 A 354 THR ILE ARG VAL ALA VAL CYS ASP MET MET GLU GLY LYS SEQRES 21 A 354 CYS PRO CYS PRO GLU PRO LEU ARG GLY VAL MET GLU LYS SEQRES 22 A 354 SER PHE LEU GLU TYR TYR ASP PHE TYR GLU VAL ALA CYS SEQRES 23 A 354 LYS ASP ARG LEU HIS LEU GLN GLY GLN THR MET GLN ASP SEQRES 24 A 354 PRO PHE GLY GLU LYS ARG GLY HIS PHE ASP TYR GLN SER SEQRES 25 A 354 LEU LEU MET ARG LEU GLY LEU ILE ARG GLN LYS VAL LEU SEQRES 26 A 354 GLU ARG LEU HIS ASN GLU ASN ALA GLU MET ASP SER ASP SEQRES 27 A 354 SER SER SER SER GLY THR GLU THR ASP LEU HIS GLY SER SEQRES 28 A 354 LEU ARG VAL HET MLI A1328 7 HET MLI A1329 7 HET MLI A1330 7 HET MLI A1331 7 HET PEG A1332 7 HET MLI A1333 7 HET PEG A1334 7 HETNAM MLI MALONATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 MLI 5(C3 H2 O4 2-) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 9 HOH *23(H2 O) HELIX 1 1 LEU A 101 GLU A 114 1 14 HELIX 2 2 LEU A 189 GLY A 193 5 5 HELIX 3 3 SER A 205 MET A 217 1 13 HELIX 4 4 ASN A 220 GLU A 225 5 6 HELIX 5 5 GLY A 235 ALA A 252 1 18 HELIX 6 6 VAL A 253 GLU A 258 1 6 HELIX 7 7 PRO A 264 TYR A 278 1 15 HELIX 8 8 TYR A 278 ASP A 288 1 11 HELIX 9 9 ARG A 289 GLN A 293 5 5 HELIX 10 10 ASP A 309 GLU A 326 1 18 SHEET 1 AA 4 MET A 119 PRO A 123 0 SHEET 2 AA 4 LYS A 130 THR A 136 -1 O HIS A 132 N VAL A 122 SHEET 3 AA 4 PHE A 147 ARG A 153 -1 O PHE A 148 N ILE A 135 SHEET 4 AA 4 ARG A 164 LEU A 167 -1 O ARG A 164 N ARG A 153 CISPEP 1 TYR A 158 PRO A 159 0 8.38 SITE 1 AC1 4 GLY A 171 THR A 174 ARG A 250 ASP A 255 SITE 1 AC2 7 ASP A 124 THR A 125 HIS A 132 PRO A 264 SITE 2 AC2 7 VAL A 284 LYS A 287 ASP A 288 SITE 1 AC3 5 ALA A 203 GLN A 204 SER A 205 SER A 208 SITE 2 AC3 5 ILE A 211 SITE 1 AC4 4 GLU A 258 ARG A 316 LEU A 319 HOH A2022 SITE 1 AC5 6 ARG A 250 HIS A 307 ASP A 309 SER A 312 SITE 2 AC5 6 LEU A 313 ARG A 316 SITE 1 AC6 4 THR A 125 VAL A 126 ASP A 127 MET A 128 SITE 1 AC7 2 CYS A 100 LEU A 101 CRYST1 45.309 57.800 105.090 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022071 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009516 0.00000