HEADER HYDROLASE 24-JUN-15 5A68 TITLE CRYSTAL STRUCTURE OF THE ATTTM3 PRODUCT COMPLEX WITH TWO TITLE 2 ORTHOPHOSPHATES AND MANGANESE IONS (FORM B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPHOSPHATE TUNEL METALLOENZYME 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADENOSINETRIPHOSPHATASE, ATPASE, TRIPHOSPHATASE, PPPASE, COMPND 5 INORGANIC TRIPHOSPHATASE; COMPND 6 EC: 3.6.1.3, 3.6.1.25; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: COL0; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS HYDROLASE, INORGANIC POLYPHOSPHATE, TRIPOLYPHOSPHATE, TRIPHOSPHATE KEYWDS 2 TUNNEL METALLOENZYME EXPDTA X-RAY DIFFRACTION AUTHOR J.MARTINEZ,V.TRUFFAULT,M.HOTHORN REVDAT 4 23-AUG-17 5A68 1 REMARK REVDAT 3 07-OCT-15 5A68 1 JRNL REVDAT 2 12-AUG-15 5A68 1 JRNL REVDAT 1 05-AUG-15 5A68 0 JRNL AUTH J.MARTINEZ,V.TRUFFAULT,M.HOTHORN JRNL TITL STRUCTURAL DETERMINANTS FOR SUBSTRATE BINDING AND CATALYSIS JRNL TITL 2 IN TRIPHOSPHATE TUNNEL METALLOENZYMES. JRNL REF J.BIOL.CHEM. V. 290 23348 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26221030 JRNL DOI 10.1074/JBC.M115.674473 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 21931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1097 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : -0.55000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.345 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1713 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1633 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2317 ; 1.436 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3775 ; 0.871 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 6.284 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;32.597 ;23.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 317 ;12.733 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.072 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1906 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 391 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 820 ; 0.860 ; 1.431 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 819 ; 0.860 ; 1.431 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1024 ; 1.137 ; 2.142 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 893 ; 0.947 ; 1.593 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3346 ; 0.765 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 38 ;18.861 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3413 ; 3.981 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 17 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6770 -2.8920 -28.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.1015 T22: 0.0109 REMARK 3 T33: 0.0446 T12: -0.0034 REMARK 3 T13: -0.0103 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 2.9620 L22: 9.8454 REMARK 3 L33: 1.5496 L12: 1.1262 REMARK 3 L13: 0.4699 L23: -0.0930 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: -0.0186 S13: 0.0489 REMARK 3 S21: -0.0488 S22: -0.1807 S23: 0.4548 REMARK 3 S31: 0.0236 S32: -0.1029 S33: 0.1776 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1070 -5.4450 -19.8610 REMARK 3 T TENSOR REMARK 3 T11: 0.1409 T22: 0.0303 REMARK 3 T33: 0.0205 T12: -0.0212 REMARK 3 T13: -0.0238 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.9148 L22: 2.2585 REMARK 3 L33: 4.9822 L12: -1.7965 REMARK 3 L13: -2.9935 L23: 2.4473 REMARK 3 S TENSOR REMARK 3 S11: -0.1377 S12: -0.0937 S13: -0.0084 REMARK 3 S21: 0.1485 S22: 0.0800 S23: -0.0679 REMARK 3 S31: 0.2850 S32: 0.1129 S33: 0.0577 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3110 2.3220 -10.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.1724 T22: 0.0127 REMARK 3 T33: 0.0299 T12: -0.0391 REMARK 3 T13: -0.0288 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 13.2038 L22: 10.7920 REMARK 3 L33: 4.4691 L12: -8.4571 REMARK 3 L13: -0.8978 L23: 0.2938 REMARK 3 S TENSOR REMARK 3 S11: -0.1492 S12: 0.0587 S13: 0.4867 REMARK 3 S21: 0.1620 S22: 0.0306 S23: -0.4194 REMARK 3 S31: 0.1955 S32: 0.0517 S33: 0.1186 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3650 7.3760 -14.7090 REMARK 3 T TENSOR REMARK 3 T11: 0.0908 T22: 0.0131 REMARK 3 T33: 0.0483 T12: -0.0062 REMARK 3 T13: -0.0535 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.6264 L22: 1.5990 REMARK 3 L33: 8.1404 L12: -0.8272 REMARK 3 L13: 2.6850 L23: -1.3815 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: -0.0086 S13: 0.1376 REMARK 3 S21: 0.1580 S22: -0.0344 S23: -0.2216 REMARK 3 S31: -0.1003 S32: 0.0928 S33: 0.1069 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4210 5.0490 -4.5190 REMARK 3 T TENSOR REMARK 3 T11: 0.1959 T22: 0.0831 REMARK 3 T33: 0.0460 T12: -0.0049 REMARK 3 T13: -0.0432 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 2.0503 L22: 2.5725 REMARK 3 L33: 4.6626 L12: -0.7551 REMARK 3 L13: -2.3394 L23: 2.0711 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: -0.2922 S13: 0.0892 REMARK 3 S21: 0.4986 S22: -0.0527 S23: 0.0580 REMARK 3 S31: 0.1226 S32: 0.0553 S33: 0.1280 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2870 -5.3600 -25.3430 REMARK 3 T TENSOR REMARK 3 T11: 0.1454 T22: 0.0200 REMARK 3 T33: 0.0148 T12: 0.0078 REMARK 3 T13: -0.0266 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 12.6247 L22: 6.7317 REMARK 3 L33: 10.1716 L12: 5.8513 REMARK 3 L13: -8.7565 L23: -4.6098 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: 0.0911 S13: -0.2173 REMARK 3 S21: 0.1871 S22: -0.0686 S23: 0.0090 REMARK 3 S31: 0.0908 S32: -0.2817 S33: 0.1117 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6070 3.9230 -36.1170 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.0566 REMARK 3 T33: 0.0264 T12: 0.0082 REMARK 3 T13: -0.0037 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 2.5021 L22: 9.8563 REMARK 3 L33: 7.6668 L12: 1.1409 REMARK 3 L13: 1.6727 L23: 6.5002 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: 0.2644 S13: 0.2101 REMARK 3 S21: -0.6500 S22: 0.0043 S23: -0.0189 REMARK 3 S31: -0.4070 S32: -0.0152 S33: 0.0086 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6590 -3.5300 -26.8800 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.0588 REMARK 3 T33: 0.0487 T12: -0.0427 REMARK 3 T13: -0.0537 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 4.2628 L22: 4.9732 REMARK 3 L33: 13.6360 L12: -2.2931 REMARK 3 L13: -4.1020 L23: 3.3160 REMARK 3 S TENSOR REMARK 3 S11: 0.1180 S12: 0.0458 S13: -0.0061 REMARK 3 S21: -0.0941 S22: -0.0580 S23: 0.1552 REMARK 3 S31: -0.0432 S32: -0.5893 S33: -0.0600 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 5A68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1290064172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23035 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 43.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.95 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS TRIS PH 7.0, 20 % PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.90550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 60 REMARK 465 VAL A 61 REMARK 465 SER A 62 REMARK 465 ALA A 63 REMARK 465 ALA A 64 REMARK 465 SER A 65 REMARK 465 LYS A 208 REMARK 465 LEU A 209 REMARK 465 PRO A 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2045 O HOH A 2093 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2008 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A2055 DISTANCE = 6.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE2 REMARK 620 2 GLU A 4 OE1 90.5 REMARK 620 3 PO4 A1000 O3 85.9 98.0 REMARK 620 4 GLU A 171 OE2 87.9 106.7 154.6 REMARK 620 5 HOH A2009 O 172.9 96.4 91.4 91.7 REMARK 620 6 PO4 A1000 O2 76.7 158.8 64.7 89.9 96.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 169 OE1 REMARK 620 2 GLU A 169 OE2 57.8 REMARK 620 3 HOH A2093 O 92.6 86.4 REMARK 620 4 GLU A 4 OE2 89.2 90.4 174.7 REMARK 620 5 PO4 A1000 O3 97.2 153.2 85.2 99.5 REMARK 620 6 PO4 A1001 O2 150.7 92.9 85.8 90.2 111.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 90 OE1 REMARK 620 2 PO4 A1000 O1 115.5 REMARK 620 3 PO4 A1000 O2 171.7 59.8 REMARK 620 4 HOH A2005 O 94.9 149.4 89.6 REMARK 620 5 HOH A2048 O 102.6 84.4 84.1 92.0 REMARK 620 6 GLU A 2 OE2 90.1 88.4 83.0 88.7 167.1 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A5Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND REMARK 900 MAGNESIUM ION (FORM A) REMARK 900 RELATED ID: 5A60 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN COMPLEX WITH REMARK 900 TRIPOLYPHOSPHATE AND TWO MAGNESIUM IONS REMARK 900 RELATED ID: 5A61 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN COMPLEX WITH REMARK 900 TRIPOLYPHOSPHATE AND TWO MANGANESE IONS. REMARK 900 RELATED ID: 5A64 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN COMPLEX WITH REMARK 900 THIAMINE TRIPHOSPHATE. REMARK 900 RELATED ID: 5A65 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN COMPLEX WITH REMARK 900 THIAMINE DIPHOSPHATE, ORTHOPHOSPHATE AND MAGNESIUM IONS. REMARK 900 RELATED ID: 5A66 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND REMARK 900 MANGANESE ION (FORM A) REMARK 900 RELATED ID: 5A67 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND REMARK 900 MANGANESE ION (FORM B) DBREF 5A68 A 1 210 UNP Q9SIY3 TTM3_ARATH 1 210 SEQADV 5A68 GLY A -1 UNP Q9SIY3 EXPRESSION TAG SEQADV 5A68 ALA A 0 UNP Q9SIY3 EXPRESSION TAG SEQRES 1 A 212 GLY ALA MET GLU VAL GLU VAL LYS LEU ARG LEU LEU THR SEQRES 2 A 212 ALA ALA ALA HIS LEU ARG LEU THR THR LEU LEU THR PRO SEQRES 3 A 212 TYR HIS LEU LYS THR LEU HIS GLN ARG ASN THR PHE PHE SEQRES 4 A 212 ASP THR PRO LYS ASN ASP LEU SER LEU ARG ARG ALA VAL SEQRES 5 A 212 LEU ARG LEU ARG PHE LEU GLN ASN ALA ALA VAL SER ALA SEQRES 6 A 212 ALA SER PRO SER PRO PRO ARG CYS ILE VAL SER LEU LYS SEQRES 7 A 212 ALA LYS PRO THR LEU ALA ASN GLY ILE SER ARG VAL GLU SEQRES 8 A 212 GLU ASP GLU GLU GLU ILE GLU TYR TRP ILE GLY LYS GLU SEQRES 9 A 212 CYS VAL GLU SER PRO ALA LYS LEU SER ASP ILE GLY SER SEQRES 10 A 212 ARG VAL LEU LYS ARG VAL LYS GLU GLU TYR GLY PHE ASN SEQRES 11 A 212 ASP PHE LEU GLY PHE VAL CYS LEU GLY GLY PHE GLU ASN SEQRES 12 A 212 VAL ARG ASN VAL TYR GLU TRP ARG GLY VAL LYS LEU GLU SEQRES 13 A 212 VAL ASP GLU THR LYS TYR ASP PHE GLY ASN CYS TYR GLU SEQRES 14 A 212 ILE GLU CYS GLU THR GLU GLU PRO GLU ARG VAL LYS THR SEQRES 15 A 212 MET ILE GLU GLU PHE LEU THR GLU GLU LYS ILE GLU PHE SEQRES 16 A 212 SER ASN SER ASP MET THR LYS PHE ALA VAL PHE ARG SER SEQRES 17 A 212 GLY LYS LEU PRO HET MN A 500 1 HET MN A 501 1 HET MN A 502 1 HET PO4 A1000 5 HET PO4 A1001 5 HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION FORMUL 2 MN 3(MN 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 HOH *136(H2 O) HELIX 1 1 THR A 11 LEU A 22 1 12 HELIX 2 2 ASN A 42 ARG A 47 1 6 HELIX 3 3 GLU A 96 SER A 106 1 11 HELIX 4 4 PRO A 107 ILE A 113 5 7 HELIX 5 5 SER A 115 GLY A 126 1 12 HELIX 6 6 GLU A 174 GLU A 189 1 16 HELIX 7 7 THR A 199 GLY A 207 1 9 SHEET 1 AA10 ALA A 0 LEU A 9 0 SHEET 2 AA10 ILE A 85 ILE A 95 -1 O SER A 86 N GLU A 4 SHEET 3 AA10 ARG A 70 ALA A 82 -1 O CYS A 71 N ILE A 95 SHEET 4 AA10 ALA A 49 ASN A 58 -1 O VAL A 50 N LYS A 76 SHEET 5 AA10 HIS A 26 ASP A 38 -1 O HIS A 31 N GLN A 57 SHEET 6 AA10 VAL A 134 TRP A 148 -1 O VAL A 134 N ASP A 38 SHEET 7 AA10 VAL A 151 TYR A 160 -1 O VAL A 151 N TRP A 148 SHEET 8 AA10 GLY A 163 GLU A 171 -1 O GLY A 163 N TYR A 160 SHEET 9 AA10 ALA A 0 LEU A 9 1 O MET A 1 N VAL A 3 LINK MN MN A 500 OE2 GLU A 2 1555 1555 2.43 LINK MN MN A 500 OE1 GLU A 4 1555 1555 2.05 LINK MN MN A 500 O3 PO4 A1000 1555 1555 2.27 LINK MN MN A 500 OE2 GLU A 171 1555 1555 2.12 LINK MN MN A 500 O HOH A2009 1555 1555 2.18 LINK MN MN A 500 O2 PO4 A1000 1555 1555 2.33 LINK MN MN A 501 OE1 GLU A 169 1555 1555 2.23 LINK MN MN A 501 OE2 GLU A 169 1555 1555 2.27 LINK MN MN A 501 O HOH A2093 1555 1555 2.30 LINK MN MN A 501 OE2 GLU A 4 1555 1555 2.14 LINK MN MN A 501 O3 PO4 A1000 1555 1555 2.06 LINK MN MN A 501 O2 PO4 A1001 1555 1555 1.94 LINK MN MN A 502 OE1 GLU A 90 1555 1555 2.11 LINK MN MN A 502 O1 PO4 A1000 1555 1555 2.64 LINK MN MN A 502 O2 PO4 A1000 1555 1555 2.23 LINK MN MN A 502 O HOH A2005 1555 1555 1.95 LINK MN MN A 502 O HOH A2048 1555 1555 2.23 LINK MN MN A 502 OE2 GLU A 2 1555 1555 2.22 SITE 1 AC1 8 GLU A 2 GLU A 4 GLU A 169 GLU A 171 SITE 2 AC1 8 MN A 501 MN A 502 PO4 A1000 HOH A2009 SITE 1 AC2 7 GLU A 4 GLU A 169 MN A 500 PO4 A1000 SITE 2 AC2 7 PO4 A1001 HOH A2046 HOH A2093 SITE 1 AC3 6 GLU A 2 GLU A 90 MN A 500 PO4 A1000 SITE 2 AC3 6 HOH A2005 HOH A2048 SITE 1 AC4 17 GLU A 2 GLU A 4 ARG A 52 ARG A 54 SITE 2 AC4 17 LYS A 76 ARG A 143 GLU A 169 GLU A 171 SITE 3 AC4 17 MN A 500 MN A 501 MN A 502 PO4 A1001 SITE 4 AC4 17 HOH A2005 HOH A2046 HOH A2048 HOH A2049 SITE 5 AC4 17 HOH A2093 SITE 1 AC5 10 GLU A 4 LYS A 6 GLU A 169 THR A 199 SITE 2 AC5 10 LYS A 200 MN A 501 PO4 A1000 HOH A2046 SITE 3 AC5 10 HOH A2093 HOH A2133 CRYST1 43.331 33.811 71.812 90.00 94.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023078 0.000000 0.001776 0.00000 SCALE2 0.000000 0.029576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013966 0.00000