HEADER VIRUS 03-JUL-15 5A79 TITLE NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS REVEALED BY TITLE 2 CRYO-EM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-A PROTEIN, COAT PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ONLY CONTAINS RESIDUES 3-131 AND 147-194 IN STRUCTURE; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA; COMPND 9 CHAIN: R SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARLEY STRIPE MOSAIC VIRUS; SOURCE 3 ORGANISM_TAXID: 12327; SOURCE 4 ATCC: PV-328; SOURCE 5 EXPRESSION_SYSTEM: AGROBACTERIUM TUMEFACIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 358; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GV3101; SOURCE 8 OTHER_DETAILS: PURIFIED FROM NICOTIANA BENTHAMIANA INFECTED PLANTS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: TOBACCO MOSAIC VIRUS (STRAIN OM); SOURCE 11 ORGANISM_TAXID: 12251 KEYWDS BSMV, VIRUS, HELICAL, CRYO-EM, IMAGE PROCESSING, MSA EXPDTA ELECTRON MICROSCOPY AUTHOR D.K.CLARE,E.PECHNIKOVA,E.SKURAT,V.MAKAROV,O.S.SOKOLOVA,A.G.SOLOVYEV, AUTHOR 2 E.V ORLOVA REVDAT 4 23-AUG-17 5A79 1 REMARK REVDAT 3 21-OCT-15 5A79 1 JRNL REVDAT 2 07-OCT-15 5A79 1 REMARK REVDAT 1 02-SEP-15 5A79 0 JRNL AUTH D.K.CLARE,E.V.PECHNIKOVA,E.V.SKURAT,V.V.MAKAROV, JRNL AUTH 2 O.S.SOKOLOVA,A.G.SOLOVYEV,E.V.ORLOVA JRNL TITL NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS JRNL TITL 2 REVEALED BY CRYO-ELECTRON MICROSCOPY. JRNL REF STRUCTURE V. 23 1815 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26278173 JRNL DOI 10.1016/J.STR.2015.06.028 REMARK 2 REMARK 2 RESOLUTION. 4.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EMAN, IMAGIC, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--RIGID BODY USING CHIMERA, FOLLOWED BY REMARK 3 FLEXIBLE FITTING IN FLEX-EM AND COOT. THEN REALSPACE REFINEMENT REMARK 3 IN PHENIX FOLLOWED BY MANUAL ADJUSTMENT IN COOT (INTERATIVE) REMARK 3 REFINEMENT PROTOCOL--CRYO-EM REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.000 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.100 REMARK 3 NUMBER OF PARTICLES : 2077 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: LAYER LINES REMARK 3 REMARK 3 OTHER DETAILS: DISORDERED REGIONS WERE MODELED STEREOCHEMICALLY REMARK 4 REMARK 4 5A79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290064231. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : CRYO-EM REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : CHIMERIC BARLEY STRIPE MOSAIC REMARK 245 VIRUS WIDE VIRION REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 3.00 REMARK 245 SAMPLE SUPPORT DETAILS : CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION 1 -- CRYOGEN- REMARK 245 ETHANE, HUMIDITY- 40, REMARK 245 TEMPERATURE- 100, INSTRUMENT- REMARK 245 HOMEMADE PLUNGER, METHOD- 3.5UL REMARK 245 OF SAMPLE WAS ADDED TO REMARK 245 CONTINUOUS CARBON COATED OR C- REMARK 245 FLAT GRIDS, BLOTTED FOR 2 REMARK 245 SECONDS AND THEN PLUNGED IN REMARK 245 LIQUID ETHANE, REMARK 245 SAMPLE BUFFER : 50MM TRIS-HCL, 50MM KCL, 10MM REMARK 245 MGCL2 REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-JUN-12 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 90.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : GATAN ULTRASCAN 4000 (4K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.30 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 25.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 150000 REMARK 245 CALIBRATED MAGNIFICATION : 150000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: REMARK 300 ROTATION PER SUBUNIT (TWIST) = 1800.00/111 DEGREES REMARK 300 RISE PER SUBUNIT (HEIGHT) = 131.20/111 ANGSTROMS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 222-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.989974 0.141247 0.000000 277.30914 REMARK 350 BIOMT2 2 -0.141247 -0.989974 0.000000 319.68318 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -65.01000 REMARK 350 BIOMT1 3 -0.911145 0.412087 0.000000 224.85864 REMARK 350 BIOMT2 3 -0.412087 -0.911145 0.000000 348.48472 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -63.82800 REMARK 350 BIOMT1 4 -0.759816 0.650138 0.000000 166.45175 REMARK 350 BIOMT2 4 -0.650138 -0.759816 0.000000 361.49312 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -62.64600 REMARK 350 BIOMT1 5 -0.548030 0.836458 0.000000 106.73582 REMARK 350 BIOMT2 5 -0.836458 -0.548030 0.000000 357.67333 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -61.46400 REMARK 350 BIOMT1 6 -0.292639 0.956223 0.000000 50.46235 REMARK 350 BIOMT2 6 -0.956223 -0.292639 0.000000 337.32927 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -60.28200 REMARK 350 BIOMT1 7 -0.013962 0.999903 0.000000 2.10895 REMARK 350 BIOMT2 7 -0.999903 -0.013962 0.000000 302.07971 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -59.10000 REMARK 350 BIOMT1 8 0.265825 0.964021 0.000000 -34.47698 REMARK 350 BIOMT2 8 -0.964021 0.265825 0.000000 254.72938 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -57.91800 REMARK 350 BIOMT1 9 0.524462 0.851434 0.000000 -56.38435 REMARK 350 BIOMT2 9 -0.851434 0.524462 0.000000 199.04590 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -56.73600 REMARK 350 BIOMT1 10 0.741367 0.671100 0.000000 -61.87002 REMARK 350 BIOMT2 10 -0.671100 0.741367 0.000000 139.45990 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -55.55400 REMARK 350 BIOMT1 11 0.899283 0.437367 0.000000 -50.49751 REMARK 350 BIOMT2 11 -0.437367 0.899283 0.000000 80.71256 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 -54.37200 REMARK 350 BIOMT1 12 0.985645 0.168833 0.000000 -23.17171 REMARK 350 BIOMT2 12 -0.168833 0.985645 0.000000 27.47833 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 -53.19000 REMARK 350 BIOMT1 13 0.993580 -0.113134 0.000000 17.93311 REMARK 350 BIOMT2 13 0.113134 0.993580 0.000000 -16.00704 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 -52.00800 REMARK 350 BIOMT1 14 0.922457 -0.386099 0.000000 69.54630 REMARK 350 BIOMT2 14 0.386099 0.922457 0.000000 -46.28347 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 -50.82600 REMARK 350 BIOMT1 15 0.777936 -0.628343 0.000000 127.56107 REMARK 350 BIOMT2 15 0.628343 0.777936 0.000000 -60.94192 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 -49.64400 REMARK 350 BIOMT1 16 0.571516 -0.820591 0.000000 187.36127 REMARK 350 BIOMT2 16 0.820591 0.571516 0.000000 -58.81603 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 -48.46200 REMARK 350 BIOMT1 17 0.319621 -0.947546 0.000000 244.18869 REMARK 350 BIOMT2 17 0.947546 0.319621 0.000000 -40.07496 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 -47.28000 REMARK 350 BIOMT1 18 0.042294 -0.999105 0.000000 293.52166 REMARK 350 BIOMT2 18 0.999105 0.042294 0.000000 -6.20990 REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 -46.09800 REMARK 350 BIOMT1 19 -0.238398 -0.971168 0.000000 331.43482 REMARK 350 BIOMT2 19 0.971168 -0.238398 0.000000 40.08454 REMARK 350 BIOMT3 19 0.000000 0.000000 1.000000 -44.91600 REMARK 350 BIOMT1 20 -0.500121 -0.865956 0.000000 354.91147 REMARK 350 BIOMT2 20 0.865956 -0.500121 0.000000 95.12480 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 -43.73400 REMARK 350 BIOMT1 21 -0.722050 -0.691841 0.000000 362.08363 REMARK 350 BIOMT2 21 0.691841 -0.722050 0.000000 154.53140 REMARK 350 BIOMT3 21 0.000000 0.000000 1.000000 -42.55200 REMARK 350 BIOMT1 22 -0.886527 -0.462677 0.000000 352.38061 REMARK 350 BIOMT2 22 0.462677 -0.886527 0.000000 213.57744 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 -41.37000 REMARK 350 BIOMT1 23 -0.980464 -0.196699 0.000000 326.57446 REMARK 350 BIOMT2 23 0.196699 -0.980464 0.000000 267.56471 REMARK 350 BIOMT3 23 0.000000 0.000000 1.000000 -40.18800 REMARK 350 BIOMT1 24 -0.996387 0.084930 0.000000 286.71854 REMARK 350 BIOMT2 24 -0.084930 -0.996387 0.000000 312.19754 REMARK 350 BIOMT3 24 0.000000 0.000000 1.000000 -39.00600 REMARK 350 BIOMT1 25 -0.933029 0.359801 0.000000 235.98413 REMARK 350 BIOMT2 25 -0.359801 -0.933029 0.000000 343.92455 REMARK 350 BIOMT3 25 0.000000 0.000000 1.000000 -37.82400 REMARK 350 BIOMT1 26 -0.795431 0.606044 0.000000 178.40809 REMARK 350 BIOMT2 26 -0.606044 -0.795431 0.000000 360.22127 REMARK 350 BIOMT3 26 0.000000 0.000000 1.000000 -36.64200 REMARK 350 BIOMT1 27 -0.594542 0.804064 0.000000 118.57166 REMARK 350 BIOMT2 27 -0.804064 -0.594542 0.000000 359.79099 REMARK 350 BIOMT3 27 0.000000 0.000000 1.000000 -35.46000 REMARK 350 BIOMT1 28 -0.346346 0.938107 0.000000 61.23593 REMARK 350 BIOMT2 28 -0.938107 -0.346346 0.000000 342.66795 REMARK 350 BIOMT3 28 0.000000 0.000000 1.000000 -34.27800 REMARK 350 BIOMT1 29 -0.070592 0.997505 0.000000 10.96304 REMARK 350 BIOMT2 29 -0.997505 -0.070592 0.000000 310.21461 REMARK 350 BIOMT3 29 0.000000 0.000000 1.000000 -33.09600 REMARK 350 BIOMT1 30 0.210779 0.977534 0.000000 -28.24690 REMARK 350 BIOMT2 30 -0.977534 0.210779 0.000000 265.01323 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 -31.91400 REMARK 350 BIOMT1 31 0.475379 0.879781 0.000000 -53.27399 REMARK 350 BIOMT2 31 -0.879781 0.475379 0.000000 210.66042 REMARK 350 BIOMT3 31 0.000000 0.000000 1.000000 -30.73200 REMARK 350 BIOMT1 32 0.702153 0.712026 0.000000 -62.12686 REMARK 350 BIOMT2 32 -0.712026 0.702153 0.000000 151.48095 REMARK 350 BIOMT3 32 0.000000 0.000000 1.000000 -29.55000 REMARK 350 BIOMT1 33 0.873058 0.487616 0.000000 -54.10112 REMARK 350 BIOMT2 33 -0.487616 0.873058 0.000000 92.18364 REMARK 350 BIOMT3 33 0.000000 0.000000 1.000000 -28.36800 REMARK 350 BIOMT1 34 0.974496 0.224407 0.000000 -29.83536 REMARK 350 BIOMT2 34 -0.224407 0.974496 0.000000 37.48669 REMARK 350 BIOMT3 34 0.000000 0.000000 1.000000 -27.18600 REMARK 350 BIOMT1 35 0.998394 -0.056658 0.000000 8.73964 REMARK 350 BIOMT2 35 0.056658 0.998394 0.000000 -8.25774 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 -26.00400 REMARK 350 BIOMT1 36 0.942851 -0.333215 0.000000 58.55452 REMARK 350 BIOMT2 36 0.333215 0.942851 0.000000 -41.40983 REMARK 350 BIOMT3 36 0.000000 0.000000 1.000000 -24.82200 REMARK 350 BIOMT1 37 0.812287 -0.583258 0.000000 115.64558 REMARK 350 BIOMT2 37 0.583258 0.812287 0.000000 -59.33173 REMARK 350 BIOMT3 37 0.000000 0.000000 1.000000 -23.64000 REMARK 350 BIOMT1 38 0.617091 -0.786892 0.000000 175.47017 REMARK 350 BIOMT2 38 0.786892 0.617091 0.000000 -60.59741 REMARK 350 BIOMT3 38 0.000000 0.000000 1.000000 -22.45800 REMARK 350 BIOMT1 39 0.372793 -0.927914 0.000000 233.26814 REMARK 350 BIOMT2 39 0.927914 0.372793 0.000000 -45.10617 REMARK 350 BIOMT3 39 0.000000 0.000000 1.000000 -21.27600 REMARK 350 BIOMT1 40 0.098833 -0.995104 0.000000 284.44058 REMARK 350 BIOMT2 40 0.995104 0.098833 0.000000 -14.09062 REMARK 350 BIOMT3 40 0.000000 0.000000 1.000000 -20.09400 REMARK 350 BIOMT1 41 -0.182991 -0.983115 0.000000 324.91578 REMARK 350 BIOMT2 41 0.983115 -0.182991 0.000000 29.98138 REMARK 350 BIOMT3 41 0.000000 0.000000 1.000000 -18.91200 REMARK 350 BIOMT1 42 -0.450254 -0.892900 0.000000 351.47320 REMARK 350 BIOMT2 42 0.892900 -0.450254 0.000000 83.60309 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 -17.73000 REMARK 350 BIOMT1 43 -0.681692 -0.731639 0.000000 361.99969 REMARK 350 BIOMT2 43 0.731639 -0.681692 0.000000 142.50790 REMARK 350 BIOMT3 43 0.000000 0.000000 1.000000 -16.54800 REMARK 350 BIOMT1 44 -0.858888 -0.512163 0.000000 355.65768 REMARK 350 BIOMT2 44 0.512163 -0.858888 0.000000 202.00884 REMARK 350 BIOMT3 44 0.000000 0.000000 1.000000 -15.36600 REMARK 350 BIOMT1 45 -0.967744 -0.251934 0.000000 332.95179 REMARK 350 BIOMT2 45 0.251934 -0.967744 0.000000 257.37152 REMARK 350 BIOMT3 45 0.000000 0.000000 1.000000 -14.18400 REMARK 350 BIOMT1 46 -0.999598 0.028340 0.000000 295.68870 REMARK 350 BIOMT2 46 -0.028340 -0.999598 0.000000 304.19080 REMARK 350 BIOMT3 46 0.000000 0.000000 1.000000 -13.00200 REMARK 350 BIOMT1 47 -0.951916 0.306360 0.000000 246.83337 REMARK 350 BIOMT2 47 -0.306360 -0.951916 0.000000 338.74135 REMARK 350 BIOMT3 47 0.000000 0.000000 1.000000 -11.82000 REMARK 350 BIOMT1 48 -0.828491 0.560003 0.000000 190.27316 REMARK 350 BIOMT2 48 -0.560003 -0.828491 0.000000 358.27403 REMARK 350 BIOMT3 48 0.000000 0.000000 1.000000 -10.63800 REMARK 350 BIOMT1 49 -0.639144 0.769087 0.000000 130.50847 REMARK 350 BIOMT2 49 -0.769087 -0.639144 0.000000 361.23466 REMARK 350 BIOMT3 49 0.000000 0.000000 1.000000 -9.45600 REMARK 350 BIOMT1 50 -0.398941 0.916977 0.000000 72.29469 REMARK 350 BIOMT2 50 -0.916977 -0.398941 0.000000 347.38765 REMARK 350 BIOMT3 50 0.000000 0.000000 1.000000 -8.27400 REMARK 350 BIOMT1 51 -0.126995 0.991903 0.000000 20.26381 REMARK 350 BIOMT2 51 -0.991903 -0.126995 0.000000 317.83480 REMARK 350 BIOMT3 51 0.000000 0.000000 1.000000 -7.09200 REMARK 350 BIOMT1 52 0.155055 0.987906 0.000000 -21.44416 REMARK 350 BIOMT2 52 -0.987906 0.155055 0.000000 274.92758 REMARK 350 BIOMT3 52 0.000000 0.000000 1.000000 -5.91000 REMARK 350 BIOMT1 53 0.424768 0.905302 0.000000 -49.51056 REMARK 350 BIOMT2 53 -0.905302 0.424768 0.000000 222.08006 REMARK 350 BIOMT3 53 0.000000 0.000000 1.000000 -4.72800 REMARK 350 BIOMT1 54 0.660683 0.750665 0.000000 -61.70221 REMARK 350 BIOMT2 54 -0.750665 0.660683 0.000000 163.49724 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 -3.54600 REMARK 350 BIOMT1 55 0.844029 0.536298 0.000000 -57.04902 REMARK 350 BIOMT2 55 -0.536298 0.844029 0.000000 103.84046 REMARK 350 BIOMT3 55 0.000000 0.000000 1.000000 -2.36400 REMARK 350 BIOMT1 56 0.960216 0.279259 0.000000 -35.92125 REMARK 350 BIOMT2 56 -0.279259 0.960216 0.000000 47.85653 REMARK 350 BIOMT3 56 0.000000 0.000000 1.000000 -1.18200 REMARK 350 BIOMT1 57 0.960216 -0.279259 0.000000 47.85653 REMARK 350 BIOMT2 57 0.279259 0.960216 0.000000 -35.92125 REMARK 350 BIOMT3 57 0.000000 0.000000 1.000000 1.18200 REMARK 350 BIOMT1 58 0.844029 -0.536298 0.000000 103.84046 REMARK 350 BIOMT2 58 0.536298 0.844029 0.000000 -57.04902 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 2.36400 REMARK 350 BIOMT1 59 0.660683 -0.750665 0.000000 163.49724 REMARK 350 BIOMT2 59 0.750665 0.660683 0.000000 -61.70221 REMARK 350 BIOMT3 59 0.000000 0.000000 1.000000 3.54600 REMARK 350 BIOMT1 60 0.424768 -0.905302 0.000000 222.08006 REMARK 350 BIOMT2 60 0.905302 0.424768 0.000000 -49.51056 REMARK 350 BIOMT3 60 0.000000 0.000000 1.000000 4.72800 REMARK 350 BIOMT1 61 0.155055 -0.987906 0.000000 274.92758 REMARK 350 BIOMT2 61 0.987906 0.155055 0.000000 -21.44416 REMARK 350 BIOMT3 61 0.000000 0.000000 1.000000 5.91000 REMARK 350 BIOMT1 62 -0.126995 -0.991903 0.000000 317.83480 REMARK 350 BIOMT2 62 0.991903 -0.126995 0.000000 20.26381 REMARK 350 BIOMT3 62 0.000000 0.000000 1.000000 7.09200 REMARK 350 BIOMT1 63 -0.398941 -0.916977 0.000000 347.38765 REMARK 350 BIOMT2 63 0.916977 -0.398941 0.000000 72.29469 REMARK 350 BIOMT3 63 0.000000 0.000000 1.000000 8.27400 REMARK 350 BIOMT1 64 -0.639144 -0.769087 0.000000 361.23466 REMARK 350 BIOMT2 64 0.769087 -0.639144 0.000000 130.50847 REMARK 350 BIOMT3 64 0.000000 0.000000 1.000000 9.45600 REMARK 350 BIOMT1 65 -0.828491 -0.560003 0.000000 358.27403 REMARK 350 BIOMT2 65 0.560003 -0.828491 0.000000 190.27316 REMARK 350 BIOMT3 65 0.000000 0.000000 1.000000 10.63800 REMARK 350 BIOMT1 66 -0.951916 -0.306360 0.000000 338.74135 REMARK 350 BIOMT2 66 0.306360 -0.951916 0.000000 246.83337 REMARK 350 BIOMT3 66 0.000000 0.000000 1.000000 11.82000 REMARK 350 BIOMT1 67 -0.999598 -0.028340 0.000000 304.19080 REMARK 350 BIOMT2 67 0.028340 -0.999598 0.000000 295.68870 REMARK 350 BIOMT3 67 0.000000 0.000000 1.000000 13.00200 REMARK 350 BIOMT1 68 -0.967744 0.251934 0.000000 257.37152 REMARK 350 BIOMT2 68 -0.251934 -0.967744 0.000000 332.95179 REMARK 350 BIOMT3 68 0.000000 0.000000 1.000000 14.18400 REMARK 350 BIOMT1 69 -0.858888 0.512163 0.000000 202.00884 REMARK 350 BIOMT2 69 -0.512163 -0.858888 0.000000 355.65768 REMARK 350 BIOMT3 69 0.000000 0.000000 1.000000 15.36600 REMARK 350 BIOMT1 70 -0.681692 0.731639 0.000000 142.50790 REMARK 350 BIOMT2 70 -0.731639 -0.681692 0.000000 361.99969 REMARK 350 BIOMT3 70 0.000000 0.000000 1.000000 16.54800 REMARK 350 BIOMT1 71 -0.450254 0.892900 0.000000 83.60309 REMARK 350 BIOMT2 71 -0.892900 -0.450254 0.000000 351.47320 REMARK 350 BIOMT3 71 0.000000 0.000000 1.000000 17.73000 REMARK 350 BIOMT1 72 -0.182991 0.983115 0.000000 29.98138 REMARK 350 BIOMT2 72 -0.983115 -0.182991 0.000000 324.91578 REMARK 350 BIOMT3 72 0.000000 0.000000 1.000000 18.91200 REMARK 350 BIOMT1 73 0.098833 0.995104 0.000000 -14.09062 REMARK 350 BIOMT2 73 -0.995104 0.098833 0.000000 284.44058 REMARK 350 BIOMT3 73 0.000000 0.000000 1.000000 20.09400 REMARK 350 BIOMT1 74 0.372793 0.927914 0.000000 -45.10617 REMARK 350 BIOMT2 74 -0.927914 0.372793 0.000000 233.26814 REMARK 350 BIOMT3 74 0.000000 0.000000 1.000000 21.27600 REMARK 350 BIOMT1 75 0.617091 0.786892 0.000000 -60.59741 REMARK 350 BIOMT2 75 -0.786892 0.617091 0.000000 175.47017 REMARK 350 BIOMT3 75 0.000000 0.000000 1.000000 22.45800 REMARK 350 BIOMT1 76 0.812287 0.583258 0.000000 -59.33173 REMARK 350 BIOMT2 76 -0.583258 0.812287 0.000000 115.64558 REMARK 350 BIOMT3 76 0.000000 0.000000 1.000000 23.64000 REMARK 350 BIOMT1 77 0.942851 0.333215 0.000000 -41.40983 REMARK 350 BIOMT2 77 -0.333215 0.942851 0.000000 58.55452 REMARK 350 BIOMT3 77 0.000000 0.000000 1.000000 24.82200 REMARK 350 BIOMT1 78 0.998394 0.056658 0.000000 -8.25774 REMARK 350 BIOMT2 78 -0.056658 0.998394 0.000000 8.73964 REMARK 350 BIOMT3 78 0.000000 0.000000 1.000000 26.00400 REMARK 350 BIOMT1 79 0.974496 -0.224407 0.000000 37.48669 REMARK 350 BIOMT2 79 0.224407 0.974496 0.000000 -29.83536 REMARK 350 BIOMT3 79 0.000000 0.000000 1.000000 27.18600 REMARK 350 BIOMT1 80 0.873058 -0.487616 0.000000 92.18364 REMARK 350 BIOMT2 80 0.487616 0.873058 0.000000 -54.10112 REMARK 350 BIOMT3 80 0.000000 0.000000 1.000000 28.36800 REMARK 350 BIOMT1 81 0.702153 -0.712026 0.000000 151.48095 REMARK 350 BIOMT2 81 0.712026 0.702153 0.000000 -62.12686 REMARK 350 BIOMT3 81 0.000000 0.000000 1.000000 29.55000 REMARK 350 BIOMT1 82 0.475379 -0.879781 0.000000 210.66042 REMARK 350 BIOMT2 82 0.879781 0.475379 0.000000 -53.27399 REMARK 350 BIOMT3 82 0.000000 0.000000 1.000000 30.73200 REMARK 350 BIOMT1 83 0.210779 -0.977534 0.000000 265.01323 REMARK 350 BIOMT2 83 0.977534 0.210779 0.000000 -28.24690 REMARK 350 BIOMT3 83 0.000000 0.000000 1.000000 31.91400 REMARK 350 BIOMT1 84 -0.070592 -0.997505 0.000000 310.21461 REMARK 350 BIOMT2 84 0.997505 -0.070592 0.000000 10.96304 REMARK 350 BIOMT3 84 0.000000 0.000000 1.000000 33.09600 REMARK 350 BIOMT1 85 -0.346346 -0.938107 0.000000 342.66795 REMARK 350 BIOMT2 85 0.938107 -0.346346 0.000000 61.23593 REMARK 350 BIOMT3 85 0.000000 0.000000 1.000000 34.27800 REMARK 350 BIOMT1 86 -0.594542 -0.804064 0.000000 359.79099 REMARK 350 BIOMT2 86 0.804064 -0.594542 0.000000 118.57166 REMARK 350 BIOMT3 86 0.000000 0.000000 1.000000 35.46000 REMARK 350 BIOMT1 87 -0.795431 -0.606044 0.000000 360.22127 REMARK 350 BIOMT2 87 0.606044 -0.795431 0.000000 178.40809 REMARK 350 BIOMT3 87 0.000000 0.000000 1.000000 36.64200 REMARK 350 BIOMT1 88 -0.933029 -0.359801 0.000000 343.92455 REMARK 350 BIOMT2 88 0.359801 -0.933029 0.000000 235.98413 REMARK 350 BIOMT3 88 0.000000 0.000000 1.000000 37.82400 REMARK 350 BIOMT1 89 -0.996387 -0.084930 0.000000 312.19754 REMARK 350 BIOMT2 89 0.084930 -0.996387 0.000000 286.71854 REMARK 350 BIOMT3 89 0.000000 0.000000 1.000000 39.00600 REMARK 350 BIOMT1 90 -0.980464 0.196699 0.000000 267.56471 REMARK 350 BIOMT2 90 -0.196699 -0.980464 0.000000 326.57446 REMARK 350 BIOMT3 90 0.000000 0.000000 1.000000 40.18800 REMARK 350 BIOMT1 91 -0.886527 0.462677 0.000000 213.57744 REMARK 350 BIOMT2 91 -0.462677 -0.886527 0.000000 352.38061 REMARK 350 BIOMT3 91 0.000000 0.000000 1.000000 41.37000 REMARK 350 BIOMT1 92 -0.722050 0.691841 0.000000 154.53140 REMARK 350 BIOMT2 92 -0.691841 -0.722050 0.000000 362.08363 REMARK 350 BIOMT3 92 0.000000 0.000000 1.000000 42.55200 REMARK 350 BIOMT1 93 -0.500121 0.865956 0.000000 95.12480 REMARK 350 BIOMT2 93 -0.865956 -0.500121 0.000000 354.91147 REMARK 350 BIOMT3 93 0.000000 0.000000 1.000000 43.73400 REMARK 350 BIOMT1 94 -0.238398 0.971168 0.000000 40.08454 REMARK 350 BIOMT2 94 -0.971168 -0.238398 0.000000 331.43482 REMARK 350 BIOMT3 94 0.000000 0.000000 1.000000 44.91600 REMARK 350 BIOMT1 95 0.042294 0.999105 0.000000 -6.20990 REMARK 350 BIOMT2 95 -0.999105 0.042294 0.000000 293.52166 REMARK 350 BIOMT3 95 0.000000 0.000000 1.000000 46.09800 REMARK 350 BIOMT1 96 0.319621 0.947546 0.000000 -40.07496 REMARK 350 BIOMT2 96 -0.947546 0.319621 0.000000 244.18869 REMARK 350 BIOMT3 96 0.000000 0.000000 1.000000 47.28000 REMARK 350 BIOMT1 97 0.571516 0.820591 0.000000 -58.81603 REMARK 350 BIOMT2 97 -0.820591 0.571516 0.000000 187.36127 REMARK 350 BIOMT3 97 0.000000 0.000000 1.000000 48.46200 REMARK 350 BIOMT1 98 0.777936 0.628343 0.000000 -60.94192 REMARK 350 BIOMT2 98 -0.628343 0.777936 0.000000 127.56107 REMARK 350 BIOMT3 98 0.000000 0.000000 1.000000 49.64400 REMARK 350 BIOMT1 99 0.922457 0.386099 0.000000 -46.28347 REMARK 350 BIOMT2 99 -0.386099 0.922457 0.000000 69.54630 REMARK 350 BIOMT3 99 0.000000 0.000000 1.000000 50.82600 REMARK 350 BIOMT1 100 0.993580 0.113134 0.000000 -16.00704 REMARK 350 BIOMT2 100 -0.113134 0.993580 0.000000 17.93311 REMARK 350 BIOMT3 100 0.000000 0.000000 1.000000 52.00800 REMARK 350 BIOMT1 101 0.985645 -0.168833 0.000000 27.47833 REMARK 350 BIOMT2 101 0.168833 0.985645 0.000000 -23.17171 REMARK 350 BIOMT3 101 0.000000 0.000000 1.000000 53.19000 REMARK 350 BIOMT1 102 0.899283 -0.437367 0.000000 80.71256 REMARK 350 BIOMT2 102 0.437367 0.899283 0.000000 -50.49751 REMARK 350 BIOMT3 102 0.000000 0.000000 1.000000 54.37200 REMARK 350 BIOMT1 103 0.741367 -0.671100 0.000000 139.45990 REMARK 350 BIOMT2 103 0.671100 0.741367 0.000000 -61.87002 REMARK 350 BIOMT3 103 0.000000 0.000000 1.000000 55.55400 REMARK 350 BIOMT1 104 0.524462 -0.851434 0.000000 199.04590 REMARK 350 BIOMT2 104 0.851434 0.524462 0.000000 -56.38435 REMARK 350 BIOMT3 104 0.000000 0.000000 1.000000 56.73600 REMARK 350 BIOMT1 105 0.265825 -0.964021 0.000000 254.72938 REMARK 350 BIOMT2 105 0.964021 0.265825 0.000000 -34.47698 REMARK 350 BIOMT3 105 0.000000 0.000000 1.000000 57.91800 REMARK 350 BIOMT1 106 -0.013962 -0.999903 0.000000 302.07971 REMARK 350 BIOMT2 106 0.999903 -0.013962 0.000000 2.10895 REMARK 350 BIOMT3 106 0.000000 0.000000 1.000000 59.10000 REMARK 350 BIOMT1 107 -0.292639 -0.956223 0.000000 337.32927 REMARK 350 BIOMT2 107 0.956223 -0.292639 0.000000 50.46235 REMARK 350 BIOMT3 107 0.000000 0.000000 1.000000 60.28200 REMARK 350 BIOMT1 108 -0.548030 -0.836458 0.000000 357.67333 REMARK 350 BIOMT2 108 0.836458 -0.548030 0.000000 106.73582 REMARK 350 BIOMT3 108 0.000000 0.000000 1.000000 61.46400 REMARK 350 BIOMT1 109 -0.759816 -0.650138 0.000000 361.49312 REMARK 350 BIOMT2 109 0.650138 -0.759816 0.000000 166.45175 REMARK 350 BIOMT3 109 0.000000 0.000000 1.000000 62.64600 REMARK 350 BIOMT1 110 -0.911145 -0.412087 0.000000 348.48472 REMARK 350 BIOMT2 110 0.412087 -0.911145 0.000000 224.85864 REMARK 350 BIOMT3 110 0.000000 0.000000 1.000000 63.82800 REMARK 350 BIOMT1 111 -0.989974 -0.141247 0.000000 319.68318 REMARK 350 BIOMT2 111 0.141247 -0.989974 0.000000 277.30914 REMARK 350 BIOMT3 111 0.000000 0.000000 1.000000 65.01000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 132 REMARK 465 THR A 133 REMARK 465 THR A 134 REMARK 465 ASN A 135 REMARK 465 PRO A 136 REMARK 465 SER A 137 REMARK 465 PRO A 138 REMARK 465 PRO A 139 REMARK 465 ALA A 140 REMARK 465 GLN A 141 REMARK 465 ALA A 142 REMARK 465 PRO A 143 REMARK 465 SER A 144 REMARK 465 GLU A 145 REMARK 465 ASN A 146 REMARK 465 ALA A 195 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 ALA A 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 16 -0.60 84.50 REMARK 500 GLU A 25 -64.90 70.78 REMARK 500 VAL A 28 -59.17 -123.31 REMARK 500 ASP A 30 0.76 80.38 REMARK 500 GLU A 37 15.48 51.40 REMARK 500 SER A 55 -7.68 67.39 REMARK 500 ARG A 122 -0.95 -57.29 REMARK 500 LEU A 126 -80.68 -128.68 REMARK 500 LEU A 149 -118.90 47.83 REMARK 500 ARG A 150 177.01 176.02 REMARK 500 SER A 171 58.41 -91.40 REMARK 500 ARG A 173 108.20 -59.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 118 HIS A 119 -141.96 REMARK 500 ILE A 192 PRO A 193 -146.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 44 -12.91 REMARK 500 LEU A 126 10.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-3073 RELATED DB: EMDB REMARK 900 RELATED ID: 5A7A RELATED DB: PDB REMARK 900 NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS REVEALED REMARK 900 BY CRYO-EM REMARK 999 REMARK 999 SEQUENCE REMARK 999 ONLY CONTAINS RESIDUES 3-131 AND 147-194 IN STRUCTURE DBREF 5A79 A 1 198 UNP P04866 CAPSD_BSMV 1 198 DBREF 5A79 R 1 3 PDB 5A79 5A79 1 3 SEQRES 1 A 198 MET PRO ASN VAL SER LEU THR ALA LYS GLY GLY GLY HIS SEQRES 2 A 198 TYR ILE GLU ASP GLN TRP ASP THR GLN VAL VAL GLU ALA SEQRES 3 A 198 GLY VAL PHE ASP ASP TRP TRP VAL HIS VAL GLU ALA TRP SEQRES 4 A 198 ASN LYS PHE LEU ASP ASN LEU ARG GLY ILE ASN PHE SER SEQRES 5 A 198 VAL ALA SER SER ARG SER GLN VAL ALA GLU TYR LEU ALA SEQRES 6 A 198 ALA LEU ASP ARG ASP LEU PRO ALA ASP VAL ASP ARG ARG SEQRES 7 A 198 PHE ALA GLY ALA ARG GLY GLN ILE GLY SER PRO ASN TYR SEQRES 8 A 198 LEU PRO ALA PRO LYS PHE PHE ARG LEU ASP LYS ARG THR SEQRES 9 A 198 ILE ALA GLU LEU THR ARG LEU SER ARG LEU THR ASP GLN SEQRES 10 A 198 PRO HIS ASN ASN ARG ASP ILE GLU LEU ASN ARG ALA LYS SEQRES 11 A 198 ARG ALA THR THR ASN PRO SER PRO PRO ALA GLN ALA PRO SEQRES 12 A 198 SER GLU ASN LEU THR LEU ARG ASP VAL GLN PRO LEU LYS SEQRES 13 A 198 ASP SER ALA LEU HIS TYR GLN TYR VAL LEU ILE ASP LEU SEQRES 14 A 198 GLN SER ALA ARG LEU PRO VAL TYR THR ARG LYS THR PHE SEQRES 15 A 198 GLU ARG GLU LEU ALA LEU GLU TRP ILE ILE PRO ASP ALA SEQRES 16 A 198 GLU GLU ALA SEQRES 1 R 3 G A A HELIX 1 1 ASP A 17 GLN A 22 1 6 HELIX 2 2 ALA A 38 LEU A 46 1 9 HELIX 3 3 ARG A 57 ALA A 65 1 9 HELIX 4 4 ASP A 101 THR A 115 1 15 HELIX 5 5 ASN A 120 LEU A 126 5 7 HELIX 6 6 VAL A 152 SER A 171 1 20 HELIX 7 7 THR A 178 LEU A 186 1 9 SHEET 1 AA 3 VAL A 34 HIS A 35 0 SHEET 2 AA 3 PHE A 97 PHE A 98 -1 N PHE A 98 O VAL A 34 SHEET 3 AA 3 VAL A 176 TYR A 177 -1 O TYR A 177 N PHE A 97 CISPEP 1 GLY A 12 HIS A 13 0 -12.24 CISPEP 2 ARG A 47 GLY A 48 0 4.69 CISPEP 3 PHE A 51 SER A 52 0 3.34 CISPEP 4 LEU A 67 ASP A 68 0 9.71 CISPEP 5 VAL A 75 ASP A 76 0 8.76 CISPEP 6 GLY A 81 ALA A 82 0 2.98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000