data_5A7A # _entry.id 5A7A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5A7A pdb_00005a7a 10.2210/pdb5a7a/pdb PDBE EBI-64238 ? ? WWPDB D_1290064238 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-02 2 'Structure model' 1 1 2015-10-21 3 'Structure model' 1 2 2017-08-23 4 'Structure model' 1 3 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_3d_fitting 2 3 'Structure model' em_software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_3d_fitting.target_criteria' 2 3 'Structure model' '_em_software.image_processing_id' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_oper_list.name' 6 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5A7A _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-07-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5A79 unspecified 'NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS REVEALED BY CRYO-EM' EMDB EMD-3074 'associated EM volume' 'NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS REVEALED BY CRYO-EM' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clare, D.K.' 1 'Pechnikova, E.' 2 'Skurat, E.' 3 'Makarov, V.' 4 'Sokolova, O.S.' 5 'Solovyev, A.G.' 6 'V Orlova, E.' 7 # _citation.id primary _citation.title 'Novel Inter-Subunit Contacts in Barley Stripe Mosaic Virus Revealed by Cryo-Electron Microscopy.' _citation.journal_abbrev Structure _citation.journal_volume 23 _citation.page_first 1815 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26278173 _citation.pdbx_database_id_DOI 10.1016/J.STR.2015.06.028 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clare, D.K.' 1 ? primary 'Pechnikova, E.V.' 2 ? primary 'Skurat, E.V.' 3 ? primary 'Makarov, V.V.' 4 ? primary 'Sokolova, O.S.' 5 ? primary 'Solovyev, A.G.' 6 ? primary 'Orlova, E.V.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BARLEY STRIPE MOSAIC VIRUS NARROW' 22555.225 1 ? ? ? 'ONLY CONTAINS RESIDUES 3-131 AND 148-193 IN STRUCTURE' 2 polymer man RNA 958.660 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MPNVSLTAKGGGHYIEDQWDTQVVEAGVFDDWWVHVEAWNKFLDNLRGINFSVASSRSQVAEYLAALDRDLPADVDRRFA GARGQIGSPNYLPAPKFFRLDKRTIAELTRLSRLTDQPHNNRDIELNRAKRATTNPSPPAQAPSENLTLRDVQPLKDSAL HYQYVLIDLQSARLPVYTRKTFERELALEWIIPDAEEA ; ;MPNVSLTAKGGGHYIEDQWDTQVVEAGVFDDWWVHVEAWNKFLDNLRGINFSVASSRSQVAEYLAALDRDLPADVDRRFA GARGQIGSPNYLPAPKFFRLDKRTIAELTRLSRLTDQPHNNRDIELNRAKRATTNPSPPAQAPSENLTLRDVQPLKDSAL HYQYVLIDLQSARLPVYTRKTFERELALEWIIPDAEEA ; A ? 2 polyribonucleotide no no GAA GAA R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 ASN n 1 4 VAL n 1 5 SER n 1 6 LEU n 1 7 THR n 1 8 ALA n 1 9 LYS n 1 10 GLY n 1 11 GLY n 1 12 GLY n 1 13 HIS n 1 14 TYR n 1 15 ILE n 1 16 GLU n 1 17 ASP n 1 18 GLN n 1 19 TRP n 1 20 ASP n 1 21 THR n 1 22 GLN n 1 23 VAL n 1 24 VAL n 1 25 GLU n 1 26 ALA n 1 27 GLY n 1 28 VAL n 1 29 PHE n 1 30 ASP n 1 31 ASP n 1 32 TRP n 1 33 TRP n 1 34 VAL n 1 35 HIS n 1 36 VAL n 1 37 GLU n 1 38 ALA n 1 39 TRP n 1 40 ASN n 1 41 LYS n 1 42 PHE n 1 43 LEU n 1 44 ASP n 1 45 ASN n 1 46 LEU n 1 47 ARG n 1 48 GLY n 1 49 ILE n 1 50 ASN n 1 51 PHE n 1 52 SER n 1 53 VAL n 1 54 ALA n 1 55 SER n 1 56 SER n 1 57 ARG n 1 58 SER n 1 59 GLN n 1 60 VAL n 1 61 ALA n 1 62 GLU n 1 63 TYR n 1 64 LEU n 1 65 ALA n 1 66 ALA n 1 67 LEU n 1 68 ASP n 1 69 ARG n 1 70 ASP n 1 71 LEU n 1 72 PRO n 1 73 ALA n 1 74 ASP n 1 75 VAL n 1 76 ASP n 1 77 ARG n 1 78 ARG n 1 79 PHE n 1 80 ALA n 1 81 GLY n 1 82 ALA n 1 83 ARG n 1 84 GLY n 1 85 GLN n 1 86 ILE n 1 87 GLY n 1 88 SER n 1 89 PRO n 1 90 ASN n 1 91 TYR n 1 92 LEU n 1 93 PRO n 1 94 ALA n 1 95 PRO n 1 96 LYS n 1 97 PHE n 1 98 PHE n 1 99 ARG n 1 100 LEU n 1 101 ASP n 1 102 LYS n 1 103 ARG n 1 104 THR n 1 105 ILE n 1 106 ALA n 1 107 GLU n 1 108 LEU n 1 109 THR n 1 110 ARG n 1 111 LEU n 1 112 SER n 1 113 ARG n 1 114 LEU n 1 115 THR n 1 116 ASP n 1 117 GLN n 1 118 PRO n 1 119 HIS n 1 120 ASN n 1 121 ASN n 1 122 ARG n 1 123 ASP n 1 124 ILE n 1 125 GLU n 1 126 LEU n 1 127 ASN n 1 128 ARG n 1 129 ALA n 1 130 LYS n 1 131 ARG n 1 132 ALA n 1 133 THR n 1 134 THR n 1 135 ASN n 1 136 PRO n 1 137 SER n 1 138 PRO n 1 139 PRO n 1 140 ALA n 1 141 GLN n 1 142 ALA n 1 143 PRO n 1 144 SER n 1 145 GLU n 1 146 ASN n 1 147 LEU n 1 148 THR n 1 149 LEU n 1 150 ARG n 1 151 ASP n 1 152 VAL n 1 153 GLN n 1 154 PRO n 1 155 LEU n 1 156 LYS n 1 157 ASP n 1 158 SER n 1 159 ALA n 1 160 LEU n 1 161 HIS n 1 162 TYR n 1 163 GLN n 1 164 TYR n 1 165 VAL n 1 166 LEU n 1 167 ILE n 1 168 ASP n 1 169 LEU n 1 170 GLN n 1 171 SER n 1 172 ALA n 1 173 ARG n 1 174 LEU n 1 175 PRO n 1 176 VAL n 1 177 TYR n 1 178 THR n 1 179 ARG n 1 180 LYS n 1 181 THR n 1 182 PHE n 1 183 GLU n 1 184 ARG n 1 185 GLU n 1 186 LEU n 1 187 ALA n 1 188 LEU n 1 189 GLU n 1 190 TRP n 1 191 ILE n 1 192 ILE n 1 193 PRO n 1 194 ASP n 1 195 ALA n 1 196 GLU n 1 197 GLU n 1 198 ALA n 2 1 G n 2 2 A n 2 3 A n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? ? ? ND18 ? ? ? ? 'BARLEY STRIPE MOSAIC VIRUS' 12327 ? ? PV-328 ? ? ? ? ? 'AGROBACTERIUM TUMEFACIENS' 358 ? ? ? ? ? ? GV3101 ? ? ? ? ? ? ? ? ? ? ? ? ? 'PURIFIED FROM NICOTIANA BENTHAMIANA INFECTED PLANTS' 2 1 sample ? ? ? ? ? ? ? ? ? ? ? ? 'TOBACCO MOSAIC VIRUS' 12242 ? ? ? ? ? ? ? ? 'AGROBACTERIUM TUMEFACIENS' 358 ? ? ? ? ? ? GV3101 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 TRP 19 19 19 TRP TRP A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 TRP 33 33 33 TRP TRP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 HIS 35 35 35 HIS HIS A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 ALA 132 132 ? ? ? A . n A 1 133 THR 133 133 ? ? ? A . n A 1 134 THR 134 134 ? ? ? A . n A 1 135 ASN 135 135 ? ? ? A . n A 1 136 PRO 136 136 ? ? ? A . n A 1 137 SER 137 137 ? ? ? A . n A 1 138 PRO 138 138 ? ? ? A . n A 1 139 PRO 139 139 ? ? ? A . n A 1 140 ALA 140 140 ? ? ? A . n A 1 141 GLN 141 141 ? ? ? A . n A 1 142 ALA 142 142 ? ? ? A . n A 1 143 PRO 143 143 ? ? ? A . n A 1 144 SER 144 144 ? ? ? A . n A 1 145 GLU 145 145 ? ? ? A . n A 1 146 ASN 146 146 ? ? ? A . n A 1 147 LEU 147 147 ? ? ? A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 PRO 154 154 154 PRO PRO A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 ALA 159 159 159 ALA ALA A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 HIS 161 161 161 HIS HIS A . n A 1 162 TYR 162 162 162 TYR TYR A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 TYR 164 164 164 TYR TYR A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 GLN 170 170 170 GLN GLN A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 ARG 179 179 179 ARG ARG A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 PHE 182 182 182 PHE PHE A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 ARG 184 184 184 ARG ARG A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 ALA 187 187 187 ALA ALA A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 TRP 190 190 190 TRP TRP A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 ILE 192 192 192 ILE ILE A . n A 1 193 PRO 193 193 193 PRO PRO A . n A 1 194 ASP 194 194 ? ? ? A . n A 1 195 ALA 195 195 ? ? ? A . n A 1 196 GLU 196 196 ? ? ? A . n A 1 197 GLU 197 197 ? ? ? A . n A 1 198 ALA 198 198 ? ? ? A . n B 2 1 G 1 1 1 G G R . n B 2 2 A 2 2 2 A A R . n B 2 3 A 3 3 3 A A R . n # _cell.entry_id 5A7A _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A7A _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 5A7A _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 5A7A _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 4.10 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1432 _refine_hist.pdbx_number_atoms_nucleic_acid 67 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1499 _refine_hist.d_res_high 4.10 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 5A7A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5A7A _struct.title 'Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5A7A _struct_keywords.pdbx_keywords VIRUS _struct_keywords.text 'VIRUS, BSMV, HELICAL, CRYO-EM, IMAGE PROCESSING, MSA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP CAPSD_BSMV 1 ? ? P04866 ? 2 PDB 5A7A 2 ? ? 5A7A ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5A7A A 1 ? 198 ? P04866 1 ? 198 ? 1 198 2 2 5A7A R 1 ? 3 ? 5A7A 1 ? 3 ? 1 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 212-meric _pdbx_struct_assembly.oligomeric_count 212 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106 ; _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'helical symmetry operation' ? ? -0.95610000 0.29303900 0.00000000 249.45917 -0.29303900 -0.95610000 0.00000000 337.37095 0.00000000 0.00000000 1.00000000 -64.48000 3 'helical symmetry operation' ? ? -0.82884200 0.55948200 0.00000000 190.40401 -0.55948200 -0.82884200 0.00000000 358.24869 0.00000000 0.00000000 1.00000000 -63.24000 4 'helical symmetry operation' ? ? -0.62932000 0.77714600 0.00000000 127.82616 -0.77714600 -0.62932000 0.00000000 360.96995 0.00000000 0.00000000 1.00000000 -62.00000 5 'helical symmetry operation' ? ? -0.37493000 0.92705300 0.00000000 67.18158 -0.92705300 -0.37493000 0.00000000 345.29749 0.00000000 0.00000000 1.00000000 -60.76000 6 'helical symmetry operation' ? ? -0.08785100 0.99613400 0.00000000 13.75764 -0.99613400 -0.08785100 0.00000000 312.59772 0.00000000 0.00000000 1.00000000 -59.52000 7 'helical symmetry operation' ? ? 0.20688700 0.97836500 0.00000000 -27.78781 -0.97836500 0.20688700 0.00000000 265.72163 0.00000000 0.00000000 1.00000000 -58.28000 8 'helical symmetry operation' ? ? 0.48358800 0.87529600 0.00000000 -53.83256 -0.87529600 0.48358800 0.00000000 208.75617 0.00000000 0.00000000 1.00000000 -57.04000 9 'helical symmetry operation' ? ? 0.71812600 0.69591300 0.00000000 -62.10586 -0.69591300 0.71812600 0.00000000 146.66797 0.00000000 0.00000000 1.00000000 -55.80000 10 'helical symmetry operation' ? ? 0.89005400 0.45585600 0.00000000 -51.88640 -0.45585600 0.89005400 0.00000000 84.87028 0.00000000 0.00000000 1.00000000 -54.56000 11 'helical symmetry operation' ? ? 0.98438100 0.17605400 0.00000000 -24.06518 -0.17605400 0.98438100 0.00000000 28.75102 0.00000000 0.00000000 1.00000000 -53.32000 12 'helical symmetry operation' ? ? 0.99288300 -0.11909700 0.00000000 18.93218 0.11909700 0.99288300 0.00000000 -16.79696 0.00000000 0.00000000 1.00000000 -52.08000 13 'helical symmetry operation' ? ? 0.91481900 -0.40386500 0.00000000 73.35689 0.40386500 0.91481900 0.00000000 -47.80251 0.00000000 0.00000000 1.00000000 -50.84000 14 'helical symmetry operation' ? ? 0.75699500 -0.65342100 0.00000000 134.46383 0.65342100 0.75699500 0.00000000 -61.56235 0.00000000 0.00000000 1.00000000 -49.60000 15 'helical symmetry operation' ? ? 0.53317200 -0.84600700 0.00000000 196.92532 0.84600700 0.53317200 0.00000000 -56.87681 0.00000000 0.00000000 1.00000000 -48.36000 16 'helical symmetry operation' ? ? 0.26286300 -0.96483300 0.00000000 255.29556 0.96483300 0.26286300 0.00000000 -34.15441 0.00000000 0.00000000 1.00000000 -47.12000 17 'helical symmetry operation' ? ? -0.03036400 -0.99953900 0.00000000 304.48545 0.99953900 -0.03036400 0.00000000 4.62377 0.00000000 0.00000000 1.00000000 -45.88000 18 'helical symmetry operation' ? ? -0.32094400 -0.94709800 0.00000000 340.20629 0.94709800 -0.32094400 0.00000000 56.07680 0.00000000 0.00000000 1.00000000 -44.64000 19 'helical symmetry operation' ? ? -0.58354100 -0.81208400 0.00000000 359.34371 0.81208400 -0.58354100 0.00000000 115.71865 0.00000000 0.00000000 1.00000000 -43.40000 20 'helical symmetry operation' ? ? -0.79526200 -0.60626600 0.00000000 360.22919 0.60626600 -0.79526200 0.00000000 178.34938 0.00000000 0.00000000 1.00000000 -42.16000 21 'helical symmetry operation' ? ? -0.93764600 -0.34759000 0.00000000 342.78553 0.34759000 -0.93764600 0.00000000 238.50842 0.00000000 0.00000000 1.00000000 -40.92000 22 'helical symmetry operation' ? ? -0.99828100 -0.05860900 0.00000000 308.53357 0.05860900 -0.99828100 0.00000000 290.95073 0.00000000 0.00000000 1.00000000 -39.68000 23 'helical symmetry operation' ? ? -0.97187900 0.23548100 0.00000000 260.45962 -0.23548100 -0.97187900 0.00000000 331.10404 0.00000000 0.00000000 1.00000000 -38.44000 24 'helical symmetry operation' ? ? -0.86074200 0.50904100 0.00000000 202.75509 -0.50904100 -0.86074200 0.00000000 355.46752 0.00000000 0.00000000 1.00000000 -37.20000 25 'helical symmetry operation' ? ? -0.67456000 0.73822000 0.00000000 140.45103 -0.73822000 -0.67456000 0.00000000 361.91701 0.00000000 0.00000000 1.00000000 -35.96000 26 'helical symmetry operation' ? ? -0.42956600 0.90303600 0.00000000 78.97951 -0.90303600 -0.42956600 0.00000000 349.89019 0.00000000 0.00000000 1.00000000 -34.72000 27 'helical symmetry operation' ? ? -0.14711900 0.98911900 0.00000000 23.70001 -0.98911900 -0.14711900 0.00000000 320.43566 0.00000000 0.00000000 1.00000000 -33.48000 28 'helical symmetry operation' ? ? 0.14815500 0.98896400 0.00000000 -20.56783 -0.98896400 0.14815500 0.00000000 276.12144 0.00000000 0.00000000 1.00000000 -32.24000 29 'helical symmetry operation' ? ? 0.43051100 0.90258500 0.00000000 -49.96446 -0.90258500 0.43051100 0.00000000 220.81113 0.00000000 0.00000000 1.00000000 -31.00000 30 'helical symmetry operation' ? ? 0.67533300 0.73751300 0.00000000 -61.92689 -0.73751300 0.67533300 0.00000000 159.32705 0.00000000 0.00000000 1.00000000 -29.76000 31 'helical symmetry operation' ? ? 0.86127500 0.50814000 0.00000000 -55.41216 -0.50814000 0.86127500 0.00000000 97.02977 0.00000000 0.00000000 1.00000000 -28.52000 32 'helical symmetry operation' ? ? 0.97212500 0.23446300 0.00000000 -30.98826 -0.23446300 0.97212500 0.00000000 39.35079 0.00000000 0.00000000 1.00000000 -27.28000 33 'helical symmetry operation' ? ? 0.99821900 -0.05965500 0.00000000 9.21536 0.05965500 0.99821900 0.00000000 -8.68108 0.00000000 0.00000000 1.00000000 -26.04000 34 'helical symmetry operation' ? ? 0.93728200 -0.34857200 0.00000000 61.69351 0.34857200 0.93728200 0.00000000 -42.87811 0.00000000 0.00000000 1.00000000 -24.80000 35 'helical symmetry operation' ? ? 0.79462700 -0.60709800 0.00000000 121.87079 0.60709800 0.79462700 0.00000000 -60.25876 0.00000000 0.00000000 1.00000000 -23.56000 36 'helical symmetry operation' ? ? 0.58269000 -0.81269400 0.00000000 184.50055 0.81269400 0.58269000 0.00000000 -59.30770 0.00000000 0.00000000 1.00000000 -22.32000 37 'helical symmetry operation' ? ? 0.31995200 -0.94743400 0.00000000 244.12234 0.94743400 0.31995200 0.00000000 -40.10783 0.00000000 0.00000000 1.00000000 -21.08000 38 'helical symmetry operation' ? ? 0.02931700 -0.99957000 0.00000000 295.53792 0.99957000 0.02931700 0.00000000 -4.33312 0.00000000 0.00000000 1.00000000 -19.84000 39 'helical symmetry operation' ? ? -0.26387300 -0.96455700 0.00000000 334.26457 0.96455700 -0.26387300 0.00000000 44.89734 0.00000000 0.00000000 1.00000000 -18.60000 40 'helical symmetry operation' ? ? -0.53405700 -0.84544800 0.00000000 356.92584 0.84544800 -0.53405700 0.00000000 103.29134 0.00000000 0.00000000 1.00000000 -17.36000 41 'helical symmetry operation' ? ? -0.75767900 -0.65262800 0.00000000 361.54596 0.65262800 -0.75767900 0.00000000 165.75771 0.00000000 0.00000000 1.00000000 -16.12000 42 'helical symmetry operation' ? ? -0.91524100 -0.40290600 0.00000000 347.72214 0.40290600 -0.91524100 0.00000000 226.85021 0.00000000 0.00000000 1.00000000 -14.88000 43 'helical symmetry operation' ? ? -0.99300700 -0.11805700 0.00000000 316.65962 0.11805700 -0.99300700 0.00000000 281.24241 0.00000000 0.00000000 1.00000000 -13.64000 44 'helical symmetry operation' ? ? -0.98419600 0.17708500 0.00000000 271.06663 -0.17708500 -0.98419600 0.00000000 324.19205 0.00000000 0.00000000 1.00000000 -12.40000 45 'helical symmetry operation' ? ? -0.88957600 0.45678700 0.00000000 214.91827 -0.45678700 -0.88957600 0.00000000 351.95450 0.00000000 0.00000000 1.00000000 -11.16000 46 'helical symmetry operation' ? ? -0.71739700 0.69666400 0.00000000 153.10991 -0.69666400 -0.71739700 0.00000000 362.10924 0.00000000 0.00000000 1.00000000 -9.92000 47 'helical symmetry operation' ? ? -0.48267100 0.87580200 0.00000000 91.03041 -0.87580200 -0.48267100 0.00000000 353.77092 0.00000000 0.00000000 1.00000000 -8.68000 48 'helical symmetry operation' ? ? -0.20586300 0.97858100 0.00000000 34.09226 -0.97858100 -0.20586300 0.00000000 327.66653 0.00000000 0.00000000 1.00000000 -7.44000 49 'helical symmetry operation' ? ? 0.08889400 0.99604100 0.00000000 -12.74030 -0.99604100 0.08889400 0.00000000 286.07202 0.00000000 0.00000000 1.00000000 -6.20000 50 'helical symmetry operation' ? ? 0.37590100 0.92666000 0.00000000 -45.38411 -0.92666000 0.37590100 0.00000000 232.61386 0.00000000 0.00000000 1.00000000 -4.96000 51 'helical symmetry operation' ? ? 0.63013400 0.77648700 0.00000000 -60.99306 -0.77648700 0.63013400 0.00000000 171.95290 0.00000000 0.00000000 1.00000000 -3.72000 52 'helical symmetry operation' ? ? 0.82942800 0.55861400 0.00000000 -58.20626 -0.55861400 0.82942800 0.00000000 109.37793 0.00000000 0.00000000 1.00000000 -2.48000 53 'helical symmetry operation' ? ? 0.95640700 0.29203800 0.00000000 -37.26669 -0.29203800 0.95640700 0.00000000 50.34467 0.00000000 0.00000000 1.00000000 -1.24000 54 'helical symmetry operation' ? ? 0.95640700 -0.29203800 0.00000000 50.34467 0.29203800 0.95640700 0.00000000 -37.26669 0.00000000 0.00000000 1.00000000 1.24000 55 'helical symmetry operation' ? ? 0.82942800 -0.55861400 0.00000000 109.37793 0.55861400 0.82942800 0.00000000 -58.20626 0.00000000 0.00000000 1.00000000 2.48000 56 'helical symmetry operation' ? ? 0.63013400 -0.77648700 0.00000000 171.95290 0.77648700 0.63013400 0.00000000 -60.99306 0.00000000 0.00000000 1.00000000 3.72000 57 'helical symmetry operation' ? ? 0.37590100 -0.92666000 0.00000000 232.61386 0.92666000 0.37590100 0.00000000 -45.38411 0.00000000 0.00000000 1.00000000 4.96000 58 'helical symmetry operation' ? ? 0.08889400 -0.99604100 0.00000000 286.07202 0.99604100 0.08889400 0.00000000 -12.74030 0.00000000 0.00000000 1.00000000 6.20000 59 'helical symmetry operation' ? ? -0.20586300 -0.97858100 0.00000000 327.66653 0.97858100 -0.20586300 0.00000000 34.09226 0.00000000 0.00000000 1.00000000 7.44000 60 'helical symmetry operation' ? ? -0.48267100 -0.87580200 0.00000000 353.77092 0.87580200 -0.48267100 0.00000000 91.03041 0.00000000 0.00000000 1.00000000 8.68000 61 'helical symmetry operation' ? ? -0.71739700 -0.69666400 0.00000000 362.10924 0.69666400 -0.71739700 0.00000000 153.10991 0.00000000 0.00000000 1.00000000 9.92000 62 'helical symmetry operation' ? ? -0.88957600 -0.45678700 0.00000000 351.95450 0.45678700 -0.88957600 0.00000000 214.91827 0.00000000 0.00000000 1.00000000 11.16000 63 'helical symmetry operation' ? ? -0.98419600 -0.17708500 0.00000000 324.19205 0.17708500 -0.98419600 0.00000000 271.06663 0.00000000 0.00000000 1.00000000 12.40000 64 'helical symmetry operation' ? ? -0.99300700 0.11805700 0.00000000 281.24241 -0.11805700 -0.99300700 0.00000000 316.65962 0.00000000 0.00000000 1.00000000 13.64000 65 'helical symmetry operation' ? ? -0.91524100 0.40290600 0.00000000 226.85021 -0.40290600 -0.91524100 0.00000000 347.72214 0.00000000 0.00000000 1.00000000 14.88000 66 'helical symmetry operation' ? ? -0.75767900 0.65262800 0.00000000 165.75771 -0.65262800 -0.75767900 0.00000000 361.54596 0.00000000 0.00000000 1.00000000 16.12000 67 'helical symmetry operation' ? ? -0.53405700 0.84544800 0.00000000 103.29134 -0.84544800 -0.53405700 0.00000000 356.92584 0.00000000 0.00000000 1.00000000 17.36000 68 'helical symmetry operation' ? ? -0.26387300 0.96455700 0.00000000 44.89734 -0.96455700 -0.26387300 0.00000000 334.26457 0.00000000 0.00000000 1.00000000 18.60000 69 'helical symmetry operation' ? ? 0.02931700 0.99957000 0.00000000 -4.33312 -0.99957000 0.02931700 0.00000000 295.53792 0.00000000 0.00000000 1.00000000 19.84000 70 'helical symmetry operation' ? ? 0.31995200 0.94743400 0.00000000 -40.10783 -0.94743400 0.31995200 0.00000000 244.12234 0.00000000 0.00000000 1.00000000 21.08000 71 'helical symmetry operation' ? ? 0.58269000 0.81269400 0.00000000 -59.30770 -0.81269400 0.58269000 0.00000000 184.50055 0.00000000 0.00000000 1.00000000 22.32000 72 'helical symmetry operation' ? ? 0.79462700 0.60709800 0.00000000 -60.25876 -0.60709800 0.79462700 0.00000000 121.87079 0.00000000 0.00000000 1.00000000 23.56000 73 'helical symmetry operation' ? ? 0.93728200 0.34857200 0.00000000 -42.87811 -0.34857200 0.93728200 0.00000000 61.69351 0.00000000 0.00000000 1.00000000 24.80000 74 'helical symmetry operation' ? ? 0.99821900 0.05965500 0.00000000 -8.68108 -0.05965500 0.99821900 0.00000000 9.21536 0.00000000 0.00000000 1.00000000 26.04000 75 'helical symmetry operation' ? ? 0.97212500 -0.23446300 0.00000000 39.35079 0.23446300 0.97212500 0.00000000 -30.98826 0.00000000 0.00000000 1.00000000 27.28000 76 'helical symmetry operation' ? ? 0.86127500 -0.50814000 0.00000000 97.02977 0.50814000 0.86127500 0.00000000 -55.41216 0.00000000 0.00000000 1.00000000 28.52000 77 'helical symmetry operation' ? ? 0.67533300 -0.73751300 0.00000000 159.32705 0.73751300 0.67533300 0.00000000 -61.92689 0.00000000 0.00000000 1.00000000 29.76000 78 'helical symmetry operation' ? ? 0.43051100 -0.90258500 0.00000000 220.81113 0.90258500 0.43051100 0.00000000 -49.96446 0.00000000 0.00000000 1.00000000 31.00000 79 'helical symmetry operation' ? ? 0.14815500 -0.98896400 0.00000000 276.12144 0.98896400 0.14815500 0.00000000 -20.56783 0.00000000 0.00000000 1.00000000 32.24000 80 'helical symmetry operation' ? ? -0.14711900 -0.98911900 0.00000000 320.43566 0.98911900 -0.14711900 0.00000000 23.70001 0.00000000 0.00000000 1.00000000 33.48000 81 'helical symmetry operation' ? ? -0.42956600 -0.90303600 0.00000000 349.89019 0.90303600 -0.42956600 0.00000000 78.97951 0.00000000 0.00000000 1.00000000 34.72000 82 'helical symmetry operation' ? ? -0.67456000 -0.73822000 0.00000000 361.91701 0.73822000 -0.67456000 0.00000000 140.45103 0.00000000 0.00000000 1.00000000 35.96000 83 'helical symmetry operation' ? ? -0.86074200 -0.50904100 0.00000000 355.46752 0.50904100 -0.86074200 0.00000000 202.75509 0.00000000 0.00000000 1.00000000 37.20000 84 'helical symmetry operation' ? ? -0.97187900 -0.23548100 0.00000000 331.10404 0.23548100 -0.97187900 0.00000000 260.45962 0.00000000 0.00000000 1.00000000 38.44000 85 'helical symmetry operation' ? ? -0.99828100 0.05860900 0.00000000 290.95073 -0.05860900 -0.99828100 0.00000000 308.53357 0.00000000 0.00000000 1.00000000 39.68000 86 'helical symmetry operation' ? ? -0.93764600 0.34759000 0.00000000 238.50842 -0.34759000 -0.93764600 0.00000000 342.78553 0.00000000 0.00000000 1.00000000 40.92000 87 'helical symmetry operation' ? ? -0.79526200 0.60626600 0.00000000 178.34938 -0.60626600 -0.79526200 0.00000000 360.22919 0.00000000 0.00000000 1.00000000 42.16000 88 'helical symmetry operation' ? ? -0.58354100 0.81208400 0.00000000 115.71865 -0.81208400 -0.58354100 0.00000000 359.34371 0.00000000 0.00000000 1.00000000 43.40000 89 'helical symmetry operation' ? ? -0.32094400 0.94709800 0.00000000 56.07680 -0.94709800 -0.32094400 0.00000000 340.20629 0.00000000 0.00000000 1.00000000 44.64000 90 'helical symmetry operation' ? ? -0.03036400 0.99953900 0.00000000 4.62377 -0.99953900 -0.03036400 0.00000000 304.48545 0.00000000 0.00000000 1.00000000 45.88000 91 'helical symmetry operation' ? ? 0.26286300 0.96483300 0.00000000 -34.15441 -0.96483300 0.26286300 0.00000000 255.29556 0.00000000 0.00000000 1.00000000 47.12000 92 'helical symmetry operation' ? ? 0.53317200 0.84600700 0.00000000 -56.87681 -0.84600700 0.53317200 0.00000000 196.92532 0.00000000 0.00000000 1.00000000 48.36000 93 'helical symmetry operation' ? ? 0.75699500 0.65342100 0.00000000 -61.56235 -0.65342100 0.75699500 0.00000000 134.46383 0.00000000 0.00000000 1.00000000 49.60000 94 'helical symmetry operation' ? ? 0.91481900 0.40386500 0.00000000 -47.80251 -0.40386500 0.91481900 0.00000000 73.35689 0.00000000 0.00000000 1.00000000 50.84000 95 'helical symmetry operation' ? ? 0.99288300 0.11909700 0.00000000 -16.79696 -0.11909700 0.99288300 0.00000000 18.93218 0.00000000 0.00000000 1.00000000 52.08000 96 'helical symmetry operation' ? ? 0.98438100 -0.17605400 0.00000000 28.75102 0.17605400 0.98438100 0.00000000 -24.06518 0.00000000 0.00000000 1.00000000 53.32000 97 'helical symmetry operation' ? ? 0.89005400 -0.45585600 0.00000000 84.87028 0.45585600 0.89005400 0.00000000 -51.88640 0.00000000 0.00000000 1.00000000 54.56000 98 'helical symmetry operation' ? ? 0.71812600 -0.69591300 0.00000000 146.66797 0.69591300 0.71812600 0.00000000 -62.10586 0.00000000 0.00000000 1.00000000 55.80000 99 'helical symmetry operation' ? ? 0.48358800 -0.87529600 0.00000000 208.75617 0.87529600 0.48358800 0.00000000 -53.83256 0.00000000 0.00000000 1.00000000 57.04000 100 'helical symmetry operation' ? ? 0.20688700 -0.97836500 0.00000000 265.72163 0.97836500 0.20688700 0.00000000 -27.78781 0.00000000 0.00000000 1.00000000 58.28000 101 'helical symmetry operation' ? ? -0.08785100 -0.99613400 0.00000000 312.59772 0.99613400 -0.08785100 0.00000000 13.75764 0.00000000 0.00000000 1.00000000 59.52000 102 'helical symmetry operation' ? ? -0.37493000 -0.92705300 0.00000000 345.29749 0.92705300 -0.37493000 0.00000000 67.18158 0.00000000 0.00000000 1.00000000 60.76000 103 'helical symmetry operation' ? ? -0.62932000 -0.77714600 0.00000000 360.96995 0.77714600 -0.62932000 0.00000000 127.82616 0.00000000 0.00000000 1.00000000 62.00000 104 'helical symmetry operation' ? ? -0.82884200 -0.55948200 0.00000000 358.24869 0.55948200 -0.82884200 0.00000000 190.40401 0.00000000 0.00000000 1.00000000 63.24000 105 'helical symmetry operation' ? ? -0.95610000 -0.29303900 0.00000000 337.37095 0.29303900 -0.95610000 0.00000000 249.45917 0.00000000 0.00000000 1.00000000 64.48000 106 'helical symmetry operation' ? ? -0.99999900 -0.00104700 0.00000000 300.15700 0.00104700 -0.99999900 0.00000000 299.84284 0.00000000 0.00000000 1.00000000 65.72000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 18 ? VAL A 23 ? GLN A 18 VAL A 23 1 ? 6 HELX_P HELX_P2 2 ALA A 38 ? LEU A 46 ? ALA A 38 LEU A 46 1 ? 9 HELX_P HELX_P3 3 ARG A 57 ? LEU A 64 ? ARG A 57 LEU A 64 1 ? 8 HELX_P HELX_P4 4 ASP A 101 ? THR A 115 ? ASP A 101 THR A 115 1 ? 15 HELX_P HELX_P5 5 ASP A 123 ? ALA A 129 ? ASP A 123 ALA A 129 1 ? 7 HELX_P HELX_P6 6 VAL A 152 ? ALA A 172 ? VAL A 152 ALA A 172 1 ? 21 HELX_P HELX_P7 7 THR A 178 ? LEU A 186 ? THR A 178 LEU A 186 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 3 A . ? ASN 3 A VAL 4 A ? VAL 4 A 1 -0.01 2 GLY 12 A . ? GLY 12 A HIS 13 A ? HIS 13 A 1 -7.25 3 ARG 47 A . ? ARG 47 A GLY 48 A ? GLY 48 A 1 22.43 4 PHE 51 A . ? PHE 51 A SER 52 A ? SER 52 A 1 -10.89 5 VAL 75 A . ? VAL 75 A ASP 76 A ? ASP 76 A 1 4.31 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TRP A 33 ? HIS A 35 ? TRP A 33 HIS A 35 AA 2 PHE A 97 ? ARG A 99 ? PHE A 97 ARG A 99 AA 3 VAL A 176 ? TYR A 177 ? VAL A 176 TYR A 177 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 34 ? N VAL A 34 O PHE A 98 ? O PHE A 98 AA 2 3 N PHE A 97 ? N PHE A 97 O TYR A 177 ? O TYR A 177 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ASP 74 ? ? N A ARG 77 ? ? 2.12 2 1 NE2 A GLN 18 ? ? O A ALA 187 ? ? 2.17 3 1 O A ASN 120 ? ? N A ARG 122 ? ? 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 4 ? ? -55.50 -5.39 2 1 SER A 5 ? ? 52.66 -122.79 3 1 LEU A 6 ? ? 63.60 -128.39 4 1 GLU A 16 ? ? 76.86 -0.55 5 1 VAL A 23 ? ? -124.01 -64.04 6 1 PHE A 29 ? ? 70.12 -57.20 7 1 ALA A 54 ? ? -49.58 153.76 8 1 SER A 55 ? ? 77.76 -2.50 9 1 ALA A 66 ? ? 82.35 -4.75 10 1 TYR A 91 ? ? -135.09 -69.41 11 1 ARG A 122 ? ? -82.37 49.66 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ARG A 113 ? ? LEU A 114 ? ? 148.52 2 1 ASN A 120 ? ? ASN A 121 ? ? -146.31 # _pdbx_helical_symmetry.entry_id 5A7A _pdbx_helical_symmetry.number_of_operations 106 _pdbx_helical_symmetry.rotation_per_n_subunits 1800.000000 _pdbx_helical_symmetry.rise_per_n_subunits 131.2 _pdbx_helical_symmetry.n_subunits_divisor 106 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _pdbx_entry_details.entry_id 5A7A _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'ONLY CONTAINS RESIDUES 3-131 AND 148-193 IN STRUCTURE' _pdbx_entry_details.has_ligand_of_interest ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 5A7A _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details ;METHOD--RIGID BODY USING CHIMERA, FOLLOWED BY FLEXIBLE FITTING IN FLEX-EM AND COOT. THEN REALSPACE REFINEMENT IN PHENIX FOLLOWED BY MANUAL ADJUSTMENT IN COOT (INTERATIVE) REFINEMENT PROTOCOL--CRYO-EM ; _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 5A7A _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.num_particles 3007 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'PROJECTION MATCHING' _em_3d_reconstruction.nominal_pixel_size 1 _em_3d_reconstruction.actual_pixel_size 1 _em_3d_reconstruction.resolution 4.1 _em_3d_reconstruction.magnification_calibration 'LAYER LINES' _em_3d_reconstruction.details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '50MM TRIS-HCL, 50MM KCL, 10MM MGCL2' _em_buffer.pH 7.5 _em_buffer.details '50MM TRIS-HCL, 50MM KCL, 10MM MGCL2' # _em_entity_assembly.id 1 _em_entity_assembly.name 'CHIMERIC BARLEY STRIPE MOSAIC VIRUS NARROW VIRION' _em_entity_assembly.type VIRUS _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 5A7A _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 297 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 5A7A _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.date 2012-06-01 _em_imaging.temperature 90 _em_imaging.microscope_model 'FEI TECNAI F30' _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_defocus_max 3500 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.3 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 150000 _em_imaging.calibrated_magnification 150000 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details CARBON _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 5A7A _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details ;VITRIFICATION 1 -- CRYOGEN- ETHANE, HUMIDITY- 40, TEMPERATURE- 100, INSTRUMENT- HOMEMADE PLUNGER, METHOD- 3.5UL OF SAMPLE WAS ADDED TO CONTINUOUS CARBON COATED OR C-FLAT GRIDS, BLOTTED FOR 2 SECONDS AND THEN PLUNGED IN LIQUID ETHANE, ; _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 5A7A _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 1 A ALA 132 ? A ALA 132 4 1 Y 1 A THR 133 ? A THR 133 5 1 Y 1 A THR 134 ? A THR 134 6 1 Y 1 A ASN 135 ? A ASN 135 7 1 Y 1 A PRO 136 ? A PRO 136 8 1 Y 1 A SER 137 ? A SER 137 9 1 Y 1 A PRO 138 ? A PRO 138 10 1 Y 1 A PRO 139 ? A PRO 139 11 1 Y 1 A ALA 140 ? A ALA 140 12 1 Y 1 A GLN 141 ? A GLN 141 13 1 Y 1 A ALA 142 ? A ALA 142 14 1 Y 1 A PRO 143 ? A PRO 143 15 1 Y 1 A SER 144 ? A SER 144 16 1 Y 1 A GLU 145 ? A GLU 145 17 1 Y 1 A ASN 146 ? A ASN 146 18 1 Y 1 A LEU 147 ? A LEU 147 19 1 Y 1 A ASP 194 ? A ASP 194 20 1 Y 1 A ALA 195 ? A ALA 195 21 1 Y 1 A GLU 196 ? A GLU 196 22 1 Y 1 A GLU 197 ? A GLU 197 23 1 Y 1 A ALA 198 ? A ALA 198 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 G OP3 O N N 111 G P P N N 112 G OP1 O N N 113 G OP2 O N N 114 G "O5'" O N N 115 G "C5'" C N N 116 G "C4'" C N R 117 G "O4'" O N N 118 G "C3'" C N S 119 G "O3'" O N N 120 G "C2'" C N R 121 G "O2'" O N N 122 G "C1'" C N R 123 G N9 N Y N 124 G C8 C Y N 125 G N7 N Y N 126 G C5 C Y N 127 G C6 C N N 128 G O6 O N N 129 G N1 N N N 130 G C2 C N N 131 G N2 N N N 132 G N3 N N N 133 G C4 C Y N 134 G HOP3 H N N 135 G HOP2 H N N 136 G "H5'" H N N 137 G "H5''" H N N 138 G "H4'" H N N 139 G "H3'" H N N 140 G "HO3'" H N N 141 G "H2'" H N N 142 G "HO2'" H N N 143 G "H1'" H N N 144 G H8 H N N 145 G H1 H N N 146 G H21 H N N 147 G H22 H N N 148 GLN N N N N 149 GLN CA C N S 150 GLN C C N N 151 GLN O O N N 152 GLN CB C N N 153 GLN CG C N N 154 GLN CD C N N 155 GLN OE1 O N N 156 GLN NE2 N N N 157 GLN OXT O N N 158 GLN H H N N 159 GLN H2 H N N 160 GLN HA H N N 161 GLN HB2 H N N 162 GLN HB3 H N N 163 GLN HG2 H N N 164 GLN HG3 H N N 165 GLN HE21 H N N 166 GLN HE22 H N N 167 GLN HXT H N N 168 GLU N N N N 169 GLU CA C N S 170 GLU C C N N 171 GLU O O N N 172 GLU CB C N N 173 GLU CG C N N 174 GLU CD C N N 175 GLU OE1 O N N 176 GLU OE2 O N N 177 GLU OXT O N N 178 GLU H H N N 179 GLU H2 H N N 180 GLU HA H N N 181 GLU HB2 H N N 182 GLU HB3 H N N 183 GLU HG2 H N N 184 GLU HG3 H N N 185 GLU HE2 H N N 186 GLU HXT H N N 187 GLY N N N N 188 GLY CA C N N 189 GLY C C N N 190 GLY O O N N 191 GLY OXT O N N 192 GLY H H N N 193 GLY H2 H N N 194 GLY HA2 H N N 195 GLY HA3 H N N 196 GLY HXT H N N 197 HIS N N N N 198 HIS CA C N S 199 HIS C C N N 200 HIS O O N N 201 HIS CB C N N 202 HIS CG C Y N 203 HIS ND1 N Y N 204 HIS CD2 C Y N 205 HIS CE1 C Y N 206 HIS NE2 N Y N 207 HIS OXT O N N 208 HIS H H N N 209 HIS H2 H N N 210 HIS HA H N N 211 HIS HB2 H N N 212 HIS HB3 H N N 213 HIS HD1 H N N 214 HIS HD2 H N N 215 HIS HE1 H N N 216 HIS HE2 H N N 217 HIS HXT H N N 218 ILE N N N N 219 ILE CA C N S 220 ILE C C N N 221 ILE O O N N 222 ILE CB C N S 223 ILE CG1 C N N 224 ILE CG2 C N N 225 ILE CD1 C N N 226 ILE OXT O N N 227 ILE H H N N 228 ILE H2 H N N 229 ILE HA H N N 230 ILE HB H N N 231 ILE HG12 H N N 232 ILE HG13 H N N 233 ILE HG21 H N N 234 ILE HG22 H N N 235 ILE HG23 H N N 236 ILE HD11 H N N 237 ILE HD12 H N N 238 ILE HD13 H N N 239 ILE HXT H N N 240 LEU N N N N 241 LEU CA C N S 242 LEU C C N N 243 LEU O O N N 244 LEU CB C N N 245 LEU CG C N N 246 LEU CD1 C N N 247 LEU CD2 C N N 248 LEU OXT O N N 249 LEU H H N N 250 LEU H2 H N N 251 LEU HA H N N 252 LEU HB2 H N N 253 LEU HB3 H N N 254 LEU HG H N N 255 LEU HD11 H N N 256 LEU HD12 H N N 257 LEU HD13 H N N 258 LEU HD21 H N N 259 LEU HD22 H N N 260 LEU HD23 H N N 261 LEU HXT H N N 262 LYS N N N N 263 LYS CA C N S 264 LYS C C N N 265 LYS O O N N 266 LYS CB C N N 267 LYS CG C N N 268 LYS CD C N N 269 LYS CE C N N 270 LYS NZ N N N 271 LYS OXT O N N 272 LYS H H N N 273 LYS H2 H N N 274 LYS HA H N N 275 LYS HB2 H N N 276 LYS HB3 H N N 277 LYS HG2 H N N 278 LYS HG3 H N N 279 LYS HD2 H N N 280 LYS HD3 H N N 281 LYS HE2 H N N 282 LYS HE3 H N N 283 LYS HZ1 H N N 284 LYS HZ2 H N N 285 LYS HZ3 H N N 286 LYS HXT H N N 287 MET N N N N 288 MET CA C N S 289 MET C C N N 290 MET O O N N 291 MET CB C N N 292 MET CG C N N 293 MET SD S N N 294 MET CE C N N 295 MET OXT O N N 296 MET H H N N 297 MET H2 H N N 298 MET HA H N N 299 MET HB2 H N N 300 MET HB3 H N N 301 MET HG2 H N N 302 MET HG3 H N N 303 MET HE1 H N N 304 MET HE2 H N N 305 MET HE3 H N N 306 MET HXT H N N 307 PHE N N N N 308 PHE CA C N S 309 PHE C C N N 310 PHE O O N N 311 PHE CB C N N 312 PHE CG C Y N 313 PHE CD1 C Y N 314 PHE CD2 C Y N 315 PHE CE1 C Y N 316 PHE CE2 C Y N 317 PHE CZ C Y N 318 PHE OXT O N N 319 PHE H H N N 320 PHE H2 H N N 321 PHE HA H N N 322 PHE HB2 H N N 323 PHE HB3 H N N 324 PHE HD1 H N N 325 PHE HD2 H N N 326 PHE HE1 H N N 327 PHE HE2 H N N 328 PHE HZ H N N 329 PHE HXT H N N 330 PRO N N N N 331 PRO CA C N S 332 PRO C C N N 333 PRO O O N N 334 PRO CB C N N 335 PRO CG C N N 336 PRO CD C N N 337 PRO OXT O N N 338 PRO H H N N 339 PRO HA H N N 340 PRO HB2 H N N 341 PRO HB3 H N N 342 PRO HG2 H N N 343 PRO HG3 H N N 344 PRO HD2 H N N 345 PRO HD3 H N N 346 PRO HXT H N N 347 SER N N N N 348 SER CA C N S 349 SER C C N N 350 SER O O N N 351 SER CB C N N 352 SER OG O N N 353 SER OXT O N N 354 SER H H N N 355 SER H2 H N N 356 SER HA H N N 357 SER HB2 H N N 358 SER HB3 H N N 359 SER HG H N N 360 SER HXT H N N 361 THR N N N N 362 THR CA C N S 363 THR C C N N 364 THR O O N N 365 THR CB C N R 366 THR OG1 O N N 367 THR CG2 C N N 368 THR OXT O N N 369 THR H H N N 370 THR H2 H N N 371 THR HA H N N 372 THR HB H N N 373 THR HG1 H N N 374 THR HG21 H N N 375 THR HG22 H N N 376 THR HG23 H N N 377 THR HXT H N N 378 TRP N N N N 379 TRP CA C N S 380 TRP C C N N 381 TRP O O N N 382 TRP CB C N N 383 TRP CG C Y N 384 TRP CD1 C Y N 385 TRP CD2 C Y N 386 TRP NE1 N Y N 387 TRP CE2 C Y N 388 TRP CE3 C Y N 389 TRP CZ2 C Y N 390 TRP CZ3 C Y N 391 TRP CH2 C Y N 392 TRP OXT O N N 393 TRP H H N N 394 TRP H2 H N N 395 TRP HA H N N 396 TRP HB2 H N N 397 TRP HB3 H N N 398 TRP HD1 H N N 399 TRP HE1 H N N 400 TRP HE3 H N N 401 TRP HZ2 H N N 402 TRP HZ3 H N N 403 TRP HH2 H N N 404 TRP HXT H N N 405 TYR N N N N 406 TYR CA C N S 407 TYR C C N N 408 TYR O O N N 409 TYR CB C N N 410 TYR CG C Y N 411 TYR CD1 C Y N 412 TYR CD2 C Y N 413 TYR CE1 C Y N 414 TYR CE2 C Y N 415 TYR CZ C Y N 416 TYR OH O N N 417 TYR OXT O N N 418 TYR H H N N 419 TYR H2 H N N 420 TYR HA H N N 421 TYR HB2 H N N 422 TYR HB3 H N N 423 TYR HD1 H N N 424 TYR HD2 H N N 425 TYR HE1 H N N 426 TYR HE2 H N N 427 TYR HH H N N 428 TYR HXT H N N 429 VAL N N N N 430 VAL CA C N S 431 VAL C C N N 432 VAL O O N N 433 VAL CB C N N 434 VAL CG1 C N N 435 VAL CG2 C N N 436 VAL OXT O N N 437 VAL H H N N 438 VAL H2 H N N 439 VAL HA H N N 440 VAL HB H N N 441 VAL HG11 H N N 442 VAL HG12 H N N 443 VAL HG13 H N N 444 VAL HG21 H N N 445 VAL HG22 H N N 446 VAL HG23 H N N 447 VAL HXT H N N 448 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 G OP3 P sing N N 109 G OP3 HOP3 sing N N 110 G P OP1 doub N N 111 G P OP2 sing N N 112 G P "O5'" sing N N 113 G OP2 HOP2 sing N N 114 G "O5'" "C5'" sing N N 115 G "C5'" "C4'" sing N N 116 G "C5'" "H5'" sing N N 117 G "C5'" "H5''" sing N N 118 G "C4'" "O4'" sing N N 119 G "C4'" "C3'" sing N N 120 G "C4'" "H4'" sing N N 121 G "O4'" "C1'" sing N N 122 G "C3'" "O3'" sing N N 123 G "C3'" "C2'" sing N N 124 G "C3'" "H3'" sing N N 125 G "O3'" "HO3'" sing N N 126 G "C2'" "O2'" sing N N 127 G "C2'" "C1'" sing N N 128 G "C2'" "H2'" sing N N 129 G "O2'" "HO2'" sing N N 130 G "C1'" N9 sing N N 131 G "C1'" "H1'" sing N N 132 G N9 C8 sing Y N 133 G N9 C4 sing Y N 134 G C8 N7 doub Y N 135 G C8 H8 sing N N 136 G N7 C5 sing Y N 137 G C5 C6 sing N N 138 G C5 C4 doub Y N 139 G C6 O6 doub N N 140 G C6 N1 sing N N 141 G N1 C2 sing N N 142 G N1 H1 sing N N 143 G C2 N2 sing N N 144 G C2 N3 doub N N 145 G N2 H21 sing N N 146 G N2 H22 sing N N 147 G N3 C4 sing N N 148 GLN N CA sing N N 149 GLN N H sing N N 150 GLN N H2 sing N N 151 GLN CA C sing N N 152 GLN CA CB sing N N 153 GLN CA HA sing N N 154 GLN C O doub N N 155 GLN C OXT sing N N 156 GLN CB CG sing N N 157 GLN CB HB2 sing N N 158 GLN CB HB3 sing N N 159 GLN CG CD sing N N 160 GLN CG HG2 sing N N 161 GLN CG HG3 sing N N 162 GLN CD OE1 doub N N 163 GLN CD NE2 sing N N 164 GLN NE2 HE21 sing N N 165 GLN NE2 HE22 sing N N 166 GLN OXT HXT sing N N 167 GLU N CA sing N N 168 GLU N H sing N N 169 GLU N H2 sing N N 170 GLU CA C sing N N 171 GLU CA CB sing N N 172 GLU CA HA sing N N 173 GLU C O doub N N 174 GLU C OXT sing N N 175 GLU CB CG sing N N 176 GLU CB HB2 sing N N 177 GLU CB HB3 sing N N 178 GLU CG CD sing N N 179 GLU CG HG2 sing N N 180 GLU CG HG3 sing N N 181 GLU CD OE1 doub N N 182 GLU CD OE2 sing N N 183 GLU OE2 HE2 sing N N 184 GLU OXT HXT sing N N 185 GLY N CA sing N N 186 GLY N H sing N N 187 GLY N H2 sing N N 188 GLY CA C sing N N 189 GLY CA HA2 sing N N 190 GLY CA HA3 sing N N 191 GLY C O doub N N 192 GLY C OXT sing N N 193 GLY OXT HXT sing N N 194 HIS N CA sing N N 195 HIS N H sing N N 196 HIS N H2 sing N N 197 HIS CA C sing N N 198 HIS CA CB sing N N 199 HIS CA HA sing N N 200 HIS C O doub N N 201 HIS C OXT sing N N 202 HIS CB CG sing N N 203 HIS CB HB2 sing N N 204 HIS CB HB3 sing N N 205 HIS CG ND1 sing Y N 206 HIS CG CD2 doub Y N 207 HIS ND1 CE1 doub Y N 208 HIS ND1 HD1 sing N N 209 HIS CD2 NE2 sing Y N 210 HIS CD2 HD2 sing N N 211 HIS CE1 NE2 sing Y N 212 HIS CE1 HE1 sing N N 213 HIS NE2 HE2 sing N N 214 HIS OXT HXT sing N N 215 ILE N CA sing N N 216 ILE N H sing N N 217 ILE N H2 sing N N 218 ILE CA C sing N N 219 ILE CA CB sing N N 220 ILE CA HA sing N N 221 ILE C O doub N N 222 ILE C OXT sing N N 223 ILE CB CG1 sing N N 224 ILE CB CG2 sing N N 225 ILE CB HB sing N N 226 ILE CG1 CD1 sing N N 227 ILE CG1 HG12 sing N N 228 ILE CG1 HG13 sing N N 229 ILE CG2 HG21 sing N N 230 ILE CG2 HG22 sing N N 231 ILE CG2 HG23 sing N N 232 ILE CD1 HD11 sing N N 233 ILE CD1 HD12 sing N N 234 ILE CD1 HD13 sing N N 235 ILE OXT HXT sing N N 236 LEU N CA sing N N 237 LEU N H sing N N 238 LEU N H2 sing N N 239 LEU CA C sing N N 240 LEU CA CB sing N N 241 LEU CA HA sing N N 242 LEU C O doub N N 243 LEU C OXT sing N N 244 LEU CB CG sing N N 245 LEU CB HB2 sing N N 246 LEU CB HB3 sing N N 247 LEU CG CD1 sing N N 248 LEU CG CD2 sing N N 249 LEU CG HG sing N N 250 LEU CD1 HD11 sing N N 251 LEU CD1 HD12 sing N N 252 LEU CD1 HD13 sing N N 253 LEU CD2 HD21 sing N N 254 LEU CD2 HD22 sing N N 255 LEU CD2 HD23 sing N N 256 LEU OXT HXT sing N N 257 LYS N CA sing N N 258 LYS N H sing N N 259 LYS N H2 sing N N 260 LYS CA C sing N N 261 LYS CA CB sing N N 262 LYS CA HA sing N N 263 LYS C O doub N N 264 LYS C OXT sing N N 265 LYS CB CG sing N N 266 LYS CB HB2 sing N N 267 LYS CB HB3 sing N N 268 LYS CG CD sing N N 269 LYS CG HG2 sing N N 270 LYS CG HG3 sing N N 271 LYS CD CE sing N N 272 LYS CD HD2 sing N N 273 LYS CD HD3 sing N N 274 LYS CE NZ sing N N 275 LYS CE HE2 sing N N 276 LYS CE HE3 sing N N 277 LYS NZ HZ1 sing N N 278 LYS NZ HZ2 sing N N 279 LYS NZ HZ3 sing N N 280 LYS OXT HXT sing N N 281 MET N CA sing N N 282 MET N H sing N N 283 MET N H2 sing N N 284 MET CA C sing N N 285 MET CA CB sing N N 286 MET CA HA sing N N 287 MET C O doub N N 288 MET C OXT sing N N 289 MET CB CG sing N N 290 MET CB HB2 sing N N 291 MET CB HB3 sing N N 292 MET CG SD sing N N 293 MET CG HG2 sing N N 294 MET CG HG3 sing N N 295 MET SD CE sing N N 296 MET CE HE1 sing N N 297 MET CE HE2 sing N N 298 MET CE HE3 sing N N 299 MET OXT HXT sing N N 300 PHE N CA sing N N 301 PHE N H sing N N 302 PHE N H2 sing N N 303 PHE CA C sing N N 304 PHE CA CB sing N N 305 PHE CA HA sing N N 306 PHE C O doub N N 307 PHE C OXT sing N N 308 PHE CB CG sing N N 309 PHE CB HB2 sing N N 310 PHE CB HB3 sing N N 311 PHE CG CD1 doub Y N 312 PHE CG CD2 sing Y N 313 PHE CD1 CE1 sing Y N 314 PHE CD1 HD1 sing N N 315 PHE CD2 CE2 doub Y N 316 PHE CD2 HD2 sing N N 317 PHE CE1 CZ doub Y N 318 PHE CE1 HE1 sing N N 319 PHE CE2 CZ sing Y N 320 PHE CE2 HE2 sing N N 321 PHE CZ HZ sing N N 322 PHE OXT HXT sing N N 323 PRO N CA sing N N 324 PRO N CD sing N N 325 PRO N H sing N N 326 PRO CA C sing N N 327 PRO CA CB sing N N 328 PRO CA HA sing N N 329 PRO C O doub N N 330 PRO C OXT sing N N 331 PRO CB CG sing N N 332 PRO CB HB2 sing N N 333 PRO CB HB3 sing N N 334 PRO CG CD sing N N 335 PRO CG HG2 sing N N 336 PRO CG HG3 sing N N 337 PRO CD HD2 sing N N 338 PRO CD HD3 sing N N 339 PRO OXT HXT sing N N 340 SER N CA sing N N 341 SER N H sing N N 342 SER N H2 sing N N 343 SER CA C sing N N 344 SER CA CB sing N N 345 SER CA HA sing N N 346 SER C O doub N N 347 SER C OXT sing N N 348 SER CB OG sing N N 349 SER CB HB2 sing N N 350 SER CB HB3 sing N N 351 SER OG HG sing N N 352 SER OXT HXT sing N N 353 THR N CA sing N N 354 THR N H sing N N 355 THR N H2 sing N N 356 THR CA C sing N N 357 THR CA CB sing N N 358 THR CA HA sing N N 359 THR C O doub N N 360 THR C OXT sing N N 361 THR CB OG1 sing N N 362 THR CB CG2 sing N N 363 THR CB HB sing N N 364 THR OG1 HG1 sing N N 365 THR CG2 HG21 sing N N 366 THR CG2 HG22 sing N N 367 THR CG2 HG23 sing N N 368 THR OXT HXT sing N N 369 TRP N CA sing N N 370 TRP N H sing N N 371 TRP N H2 sing N N 372 TRP CA C sing N N 373 TRP CA CB sing N N 374 TRP CA HA sing N N 375 TRP C O doub N N 376 TRP C OXT sing N N 377 TRP CB CG sing N N 378 TRP CB HB2 sing N N 379 TRP CB HB3 sing N N 380 TRP CG CD1 doub Y N 381 TRP CG CD2 sing Y N 382 TRP CD1 NE1 sing Y N 383 TRP CD1 HD1 sing N N 384 TRP CD2 CE2 doub Y N 385 TRP CD2 CE3 sing Y N 386 TRP NE1 CE2 sing Y N 387 TRP NE1 HE1 sing N N 388 TRP CE2 CZ2 sing Y N 389 TRP CE3 CZ3 doub Y N 390 TRP CE3 HE3 sing N N 391 TRP CZ2 CH2 doub Y N 392 TRP CZ2 HZ2 sing N N 393 TRP CZ3 CH2 sing Y N 394 TRP CZ3 HZ3 sing N N 395 TRP CH2 HH2 sing N N 396 TRP OXT HXT sing N N 397 TYR N CA sing N N 398 TYR N H sing N N 399 TYR N H2 sing N N 400 TYR CA C sing N N 401 TYR CA CB sing N N 402 TYR CA HA sing N N 403 TYR C O doub N N 404 TYR C OXT sing N N 405 TYR CB CG sing N N 406 TYR CB HB2 sing N N 407 TYR CB HB3 sing N N 408 TYR CG CD1 doub Y N 409 TYR CG CD2 sing Y N 410 TYR CD1 CE1 sing Y N 411 TYR CD1 HD1 sing N N 412 TYR CD2 CE2 doub Y N 413 TYR CD2 HD2 sing N N 414 TYR CE1 CZ doub Y N 415 TYR CE1 HE1 sing N N 416 TYR CE2 CZ sing Y N 417 TYR CE2 HE2 sing N N 418 TYR CZ OH sing N N 419 TYR OH HH sing N N 420 TYR OXT HXT sing N N 421 VAL N CA sing N N 422 VAL N H sing N N 423 VAL N H2 sing N N 424 VAL CA C sing N N 425 VAL CA CB sing N N 426 VAL CA HA sing N N 427 VAL C O doub N N 428 VAL C OXT sing N N 429 VAL CB CG1 sing N N 430 VAL CB CG2 sing N N 431 VAL CB HB sing N N 432 VAL CG1 HG11 sing N N 433 VAL CG1 HG12 sing N N 434 VAL CG1 HG13 sing N N 435 VAL CG2 HG21 sing N N 436 VAL CG2 HG22 sing N N 437 VAL CG2 HG23 sing N N 438 VAL OXT HXT sing N N 439 # _em_ctf_correction.id 1 _em_ctf_correction.details 'PHASE FLIPPED EACH PARTICLE' _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 25 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'GATAN ULTRASCAN 4000 (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 EMAN ? RECONSTRUCTION ? 1 ? ? 2 IMAGIC ? RECONSTRUCTION ? 1 ? ? 3 SPIDER ? RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 3 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _atom_sites.entry_id 5A7A _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_