HEADER LYASE 15-JUL-15 5A8G TITLE CRYSTAL STRUCTURE OF THE WILD-TYPE STAPHYLOCOCCUS AUREUS N- TITLE 2 ACETYLNEURMINIC ACID LYASE IN COMPLEX WITH FLUOROPYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLNEURAMINATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: N-ACETYLNEURAMINIC ACID LYASE, NAL, NEU5AC LYASE, N- COMPND 5 ACETYLNEURAMINATE PYRUVATE-LYASE, N-ACETYLNEURAMINIC ACID ALDOLASE, COMPND 6 SIALATE LYASE, SIALIC ACID ALDOLASE, SIALIC ACID LYASE; COMPND 7 EC: 4.1.3.3; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: SCHIFF BASE BETWEEN K165 AND FLUOROPYRUVATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS NCTC 8325; SOURCE 3 ORGANISM_TAXID: 93061; SOURCE 4 ATCC: NCTC 8325-4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK223-3; SOURCE 10 OTHER_DETAILS: STANDARD LABORATORY STRAIN KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.STOCKWELL,A.D.DANIELS,C.L.WINDLE,T.HARMAN,T.WOODHALL,C.H.TRINH, AUTHOR 2 T.LEBEL,A.R.PEARSON,K.MULHOLLAND,A.BERRY,A.NELSON REVDAT 3 10-JAN-24 5A8G 1 LINK REVDAT 2 13-JAN-16 5A8G 1 JRNL REVDAT 1 18-NOV-15 5A8G 0 JRNL AUTH J.STOCKWELL,A.D.DANIELS,C.L.WINDLE,T.A.HARMAN,T.WOODHALL, JRNL AUTH 2 T.LEBL,C.H.TRINH,K.MULHOLLAND,A.R.PEARSON,A.BERRY,A.NELSON JRNL TITL EVALUATION OF FLUOROPYRUVATE AS NUCLEOPHILE IN REACTIONS JRNL TITL 2 CATALYSED BY N-ACETYL NEURAMINIC ACID LYASE VARIANTS: SCOPE, JRNL TITL 3 LIMITATIONS AND STEREOSELECTIVITY. JRNL REF ORG.BIOMOL.CHEM. V. 14 105 2016 JRNL REFN ISSN 1477-0520 JRNL PMID 26537532 JRNL DOI 10.1039/C5OB02037A REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 66406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3530 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4170 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 206 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 346 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.569 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4732 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4569 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6407 ; 1.641 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10499 ; 0.876 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 6.072 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;37.735 ;25.214 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 821 ;12.611 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;20.418 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 715 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5437 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1087 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2332 ; 0.912 ; 1.305 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2331 ; 0.910 ; 1.305 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2913 ; 1.422 ; 1.953 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2400 ; 1.682 ; 1.535 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): -28.6692 31.5167 17.9338 REMARK 3 T TENSOR REMARK 3 T11: 0.1252 T22: 0.0179 REMARK 3 T33: 0.0526 T12: -0.0127 REMARK 3 T13: 0.0380 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.3233 L22: 0.4716 REMARK 3 L33: 1.1013 L12: 0.0171 REMARK 3 L13: -0.0112 L23: -0.0809 REMARK 3 S TENSOR REMARK 3 S11: -0.0741 S12: 0.0242 S13: -0.0486 REMARK 3 S21: -0.0823 S22: 0.0151 S23: -0.0209 REMARK 3 S31: 0.3077 S32: 0.0293 S33: 0.0590 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 293 REMARK 3 ORIGIN FOR THE GROUP (A): -24.5565 68.8279 19.1258 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.0381 REMARK 3 T33: 0.0424 T12: -0.0450 REMARK 3 T13: -0.0055 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.4228 L22: 0.6382 REMARK 3 L33: 1.7124 L12: -0.1925 REMARK 3 L13: -0.2999 L23: 0.2278 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.0179 S13: 0.0081 REMARK 3 S21: -0.1040 S22: 0.0180 S23: -0.0414 REMARK 3 S31: -0.3146 S32: 0.0918 S33: -0.0271 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5A8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70045 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 28.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4AHP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM NACL, 100MM TRIS/HCL PH 7.0-8.5, REMARK 280 18-28% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.13950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.13950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.29350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.19800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.29350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.19800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.13950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.29350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.19800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.13950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.29350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.19800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -62.58700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.13950 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 GLU A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 ASN A 2 REMARK 465 MET B -6 REMARK 465 GLU B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 ASN B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 GLU B 117 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 265 O HOH A 2161 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2088 O HOH A 2088 3455 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 LEU B 187 CB - CG - CD1 ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG B 271 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -68.77 71.93 REMARK 500 TYR B 111 -70.77 72.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2055 DISTANCE = 6.49 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 (2S)-2-AMINO-5-[(1-CARBOXY-2-FLUOROETHYL)AMINO]PENTANOIC REMARK 600 ACID (KPF): FLUOROPYRUVATE COVALENTLY LINKED TO LYSINE REMARK 700 REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. DBREF 5A8G A 2 293 UNP Q2G160 NANA_STAA8 2 293 DBREF 5A8G B 2 293 UNP Q2G160 NANA_STAA8 2 293 SEQADV 5A8G MET A -6 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G GLU A -5 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS A -4 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS A -3 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS A -2 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS A -1 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS A 0 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS A 1 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G MET B -6 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G GLU B -5 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS B -4 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS B -3 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS B -2 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS B -1 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS B 0 UNP Q2G160 EXPRESSION TAG SEQADV 5A8G HIS B 1 UNP Q2G160 EXPRESSION TAG SEQRES 1 A 300 MET GLU HIS HIS HIS HIS HIS HIS ASN LYS ASP LEU LYS SEQRES 2 A 300 GLY LEU TYR ALA ALA LEU LEU VAL PRO PHE ASP GLU ASN SEQRES 3 A 300 GLY GLN VAL ASN GLU GLN GLY LEU LYS GLN ILE ALA GLN SEQRES 4 A 300 ASN ALA ILE GLU THR GLU GLU LEU ASP GLY LEU TYR VAL SEQRES 5 A 300 ASN GLY SER SER GLY GLU ASN PHE LEU LEU ASN THR GLU SEQRES 6 A 300 GLN LYS LYS GLN VAL PHE LYS VAL ALA LYS GLU ALA VAL SEQRES 7 A 300 GLY ASP LYS VAL LYS LEU ILE ALA GLN VAL GLY SER LEU SEQRES 8 A 300 ASP LEU ASN GLU ALA ILE GLU LEU GLY LYS TYR ALA THR SEQRES 9 A 300 GLU LEU GLY TYR ASP ALA LEU SER ALA VAL THR PRO PHE SEQRES 10 A 300 TYR TYR PRO PHE THR PHE GLU GLU ILE ARG ASP TYR TYR SEQRES 11 A 300 PHE ASP ILE ILE GLU ALA THR GLN ASN ASN MET ILE ILE SEQRES 12 A 300 TYR ALA ILE PRO ASP LEU THR GLY VAL ASN ILE SER ILE SEQRES 13 A 300 GLU GLN PHE SER GLU LEU PHE ASN HIS GLU LYS ILE VAL SEQRES 14 A 300 GLY VAL KPF TYR THR ALA PRO ASN PHE PHE LEU LEU GLU SEQRES 15 A 300 ARG ILE ARG LYS ALA PHE PRO ASP LYS LEU ILE LEU SER SEQRES 16 A 300 GLY PHE ASP GLU MET LEU VAL GLN ALA THR ILE SER GLY SEQRES 17 A 300 VAL ASP GLY ALA ILE GLY SER THR TYR ASN VAL ASN GLY SEQRES 18 A 300 ARG ARG ALA ARG LYS ILE PHE ASP LEU ALA ARG GLN GLY SEQRES 19 A 300 GLN ILE GLN GLU ALA TYR GLN LEU GLN HIS ASP SER ASN SEQRES 20 A 300 ASP ILE ILE GLU THR VAL LEU SER MET GLY ILE TYR PRO SEQRES 21 A 300 THR LEU LYS GLU ILE LEU ARG HIS ARG GLY ILE ASP ALA SEQRES 22 A 300 GLY LEU PRO LYS ARG PRO PHE LYS PRO PHE ASN GLU ALA SEQRES 23 A 300 HIS ARG GLN THR LEU ASP GLN LEU ILE ALA LYS TYR ASP SEQRES 24 A 300 LEU SEQRES 1 B 300 MET GLU HIS HIS HIS HIS HIS HIS ASN LYS ASP LEU LYS SEQRES 2 B 300 GLY LEU TYR ALA ALA LEU LEU VAL PRO PHE ASP GLU ASN SEQRES 3 B 300 GLY GLN VAL ASN GLU GLN GLY LEU LYS GLN ILE ALA GLN SEQRES 4 B 300 ASN ALA ILE GLU THR GLU GLU LEU ASP GLY LEU TYR VAL SEQRES 5 B 300 ASN GLY SER SER GLY GLU ASN PHE LEU LEU ASN THR GLU SEQRES 6 B 300 GLN LYS LYS GLN VAL PHE LYS VAL ALA LYS GLU ALA VAL SEQRES 7 B 300 GLY ASP LYS VAL LYS LEU ILE ALA GLN VAL GLY SER LEU SEQRES 8 B 300 ASP LEU ASN GLU ALA ILE GLU LEU GLY LYS TYR ALA THR SEQRES 9 B 300 GLU LEU GLY TYR ASP ALA LEU SER ALA VAL THR PRO PHE SEQRES 10 B 300 TYR TYR PRO PHE THR PHE GLU GLU ILE ARG ASP TYR TYR SEQRES 11 B 300 PHE ASP ILE ILE GLU ALA THR GLN ASN ASN MET ILE ILE SEQRES 12 B 300 TYR ALA ILE PRO ASP LEU THR GLY VAL ASN ILE SER ILE SEQRES 13 B 300 GLU GLN PHE SER GLU LEU PHE ASN HIS GLU LYS ILE VAL SEQRES 14 B 300 GLY VAL KPF TYR THR ALA PRO ASN PHE PHE LEU LEU GLU SEQRES 15 B 300 ARG ILE ARG LYS ALA PHE PRO ASP LYS LEU ILE LEU SER SEQRES 16 B 300 GLY PHE ASP GLU MET LEU VAL GLN ALA THR ILE SER GLY SEQRES 17 B 300 VAL ASP GLY ALA ILE GLY SER THR TYR ASN VAL ASN GLY SEQRES 18 B 300 ARG ARG ALA ARG LYS ILE PHE ASP LEU ALA ARG GLN GLY SEQRES 19 B 300 GLN ILE GLN GLU ALA TYR GLN LEU GLN HIS ASP SER ASN SEQRES 20 B 300 ASP ILE ILE GLU THR VAL LEU SER MET GLY ILE TYR PRO SEQRES 21 B 300 THR LEU LYS GLU ILE LEU ARG HIS ARG GLY ILE ASP ALA SEQRES 22 B 300 GLY LEU PRO LYS ARG PRO PHE LYS PRO PHE ASN GLU ALA SEQRES 23 B 300 HIS ARG GLN THR LEU ASP GLN LEU ILE ALA LYS TYR ASP SEQRES 24 B 300 LEU MODRES 5A8G KPF A 165 LYS N-(1-CARBOXY-2-FLUORO-ETHENYL) LYSINE MODRES 5A8G KPF B 165 LYS N-(1-CARBOXY-2-FLUORO-ETHENYL) LYSINE HET KPF A 165 15 HET KPF B 165 15 HETNAM KPF N-(1-CARBOXY-2-FLUORO-ETHENYL) LYSINE FORMUL 1 KPF 2(C9 H15 F N2 O4) FORMUL 3 HOH *346(H2 O) HELIX 1 1 ASN A 23 THR A 37 1 15 HELIX 2 2 GLY A 47 GLU A 51 5 5 HELIX 3 3 GLU A 51 LEU A 55 5 5 HELIX 4 4 ASN A 56 ALA A 70 1 15 HELIX 5 5 ASP A 85 GLY A 100 1 16 HELIX 6 6 THR A 115 GLN A 131 1 17 HELIX 7 7 ILE A 139 GLY A 144 1 6 HELIX 8 8 SER A 148 ASN A 157 1 10 HELIX 9 9 ASN A 170 PHE A 181 1 12 HELIX 10 10 PHE A 190 GLU A 192 5 3 HELIX 11 11 MET A 193 SER A 200 1 8 HELIX 12 12 THR A 209 GLY A 227 1 19 HELIX 13 13 GLN A 228 GLY A 250 1 23 HELIX 14 14 GLY A 250 ARG A 262 1 13 HELIX 15 15 ASN A 277 ALA A 279 5 3 HELIX 16 16 HIS A 280 ASP A 292 1 13 HELIX 17 17 ASN B 23 THR B 37 1 15 HELIX 18 18 GLY B 47 GLU B 51 5 5 HELIX 19 19 GLU B 51 LEU B 55 5 5 HELIX 20 20 ASN B 56 VAL B 71 1 16 HELIX 21 21 ASP B 85 GLY B 100 1 16 HELIX 22 22 THR B 115 GLN B 131 1 17 HELIX 23 23 ILE B 139 GLY B 144 1 6 HELIX 24 24 SER B 148 ASN B 157 1 10 HELIX 25 25 ASN B 170 PHE B 181 1 12 HELIX 26 26 PHE B 190 GLU B 192 5 3 HELIX 27 27 MET B 193 SER B 200 1 8 HELIX 28 28 THR B 209 GLY B 227 1 19 HELIX 29 29 GLN B 228 GLY B 250 1 23 HELIX 30 30 GLY B 250 ARG B 262 1 13 HELIX 31 31 ASN B 277 ALA B 279 5 3 HELIX 32 32 HIS B 280 ASP B 292 1 13 SHEET 1 AA 9 GLY A 7 ALA A 11 0 SHEET 2 AA 9 GLY A 204 GLY A 207 1 O ALA A 205 N TYR A 9 SHEET 3 AA 9 LEU A 185 SER A 188 1 O SER A 188 N ILE A 206 SHEET 4 AA 9 ILE A 161 VAL A 164 1 O VAL A 162 N LEU A 185 SHEET 5 AA 9 MET A 134 TYR A 137 1 O MET A 134 N VAL A 162 SHEET 6 AA 9 ALA A 103 VAL A 107 1 O LEU A 104 N ILE A 135 SHEET 7 AA 9 LYS A 76 GLN A 80 1 O ALA A 79 N SER A 105 SHEET 8 AA 9 GLY A 42 VAL A 45 1 O LEU A 43 N ILE A 78 SHEET 9 AA 9 GLY A 7 ALA A 11 1 O ALA A 10 N TYR A 44 SHEET 1 BA 9 GLY B 7 ALA B 11 0 SHEET 2 BA 9 GLY B 204 GLY B 207 1 O ALA B 205 N TYR B 9 SHEET 3 BA 9 LEU B 185 SER B 188 1 O SER B 188 N ILE B 206 SHEET 4 BA 9 ILE B 161 VAL B 164 1 O VAL B 162 N LEU B 185 SHEET 5 BA 9 MET B 134 TYR B 137 1 O MET B 134 N VAL B 162 SHEET 6 BA 9 ALA B 103 VAL B 107 1 O LEU B 104 N ILE B 135 SHEET 7 BA 9 LYS B 76 GLN B 80 1 O ALA B 79 N SER B 105 SHEET 8 BA 9 GLY B 42 VAL B 45 1 O LEU B 43 N ILE B 78 SHEET 9 BA 9 GLY B 7 ALA B 11 1 O ALA B 10 N TYR B 44 LINK C VAL A 164 N KPF A 165 1555 1555 1.33 LINK C KPF A 165 N TYR A 166 1555 1555 1.34 LINK C VAL B 164 N KPF B 165 1555 1555 1.32 LINK C KPF B 165 N TYR B 166 1555 1555 1.34 CISPEP 1 ARG A 271 PRO A 272 0 17.26 CISPEP 2 ARG B 271 PRO B 272 0 17.44 CRYST1 62.587 150.396 140.279 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015978 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007129 0.00000 MTRIX1 1 -0.851400 0.004464 -0.524400 -39.83000 1 MTRIX2 1 -0.004126 -1.000000 0.001812 100.30000 1 MTRIX3 1 -0.524400 0.000621 0.851400 -11.23000 1