HEADER VIRAL PROTEIN 17-JUL-15 5A8V TITLE CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA WITH SEMET TITLE 2 SUBSTITUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-POLYHEDRIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORGYIA PSEUDOTSUGATA CYPOVIRUS 5; SOURCE 3 ORGANISM_TAXID: 31592; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS VIRAL PROTEIN, INSECT VIRUS OCCLUSION BODY, MICROCRYSTAL EXPDTA X-RAY DIFFRACTION AUTHOR X.JI,D.AXFORD,R.OWEN,G.EVANS,H.M.GINN,G.SUTTON,D.I.STUART REVDAT 3 23-OCT-19 5A8V 1 SEQADV LINK REVDAT 2 14-OCT-15 5A8V 1 JRNL REVDAT 1 02-SEP-15 5A8V 0 JRNL AUTH X.JI,D.AXFORD,R.OWEN,G.EVANS,H.M.GINN,G.SUTTON,D.I.STUART JRNL TITL POLYHEDRA STRUCTURES AND THE EVOLUTION OF THE INSECT JRNL TITL 2 VIRUSES. JRNL REF J.STRUCT.BIOL. V. 192 88 2015 JRNL REFN ISSN 1047-8477 JRNL PMID 26291392 JRNL DOI 10.1016/J.JSB.2015.08.009 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.300 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0870 - 3.2911 1.00 2656 128 0.1543 0.1866 REMARK 3 2 3.2911 - 2.6125 1.00 2590 123 0.1506 0.2327 REMARK 3 3 2.6125 - 2.2823 1.00 2574 131 0.1772 0.2487 REMARK 3 4 2.2823 - 2.0737 1.00 2548 139 0.2249 0.2957 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.48 REMARK 3 B_SOL : 47.99 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2084 REMARK 3 ANGLE : 1.015 2829 REMARK 3 CHIRALITY : 0.069 283 REMARK 3 PLANARITY : 0.003 375 REMARK 3 DIHEDRAL : 18.131 759 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064399. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 128 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 72.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 64.10 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 21.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.02700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.02700 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.02700 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.02700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.02700 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.02700 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.02700 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.02700 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.02700 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.02700 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.02700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.02700 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.02700 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.02700 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.02700 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.02700 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.02700 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.02700 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.02700 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.02700 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.02700 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.02700 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.02700 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.02700 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.02700 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.02700 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.02700 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.02700 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.02700 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.02700 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.02700 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.02700 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.02700 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.02700 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.02700 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.02700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1254 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2099 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 97 -116.71 -148.29 REMARK 500 CYS A 167 -113.63 69.86 REMARK 500 LYS A 182 -68.56 -98.48 REMARK 500 PHE A 237 -70.85 -120.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1254 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 168 O REMARK 620 2 ASP A 138 OD2 83.7 REMARK 620 3 ASP A 168 O 156.4 79.5 REMARK 620 4 ASP A 138 OD1 81.7 45.7 97.9 REMARK 620 5 ASP A 138 OD2 79.5 88.9 83.7 132.5 REMARK 620 6 ASP A 138 OD1 97.9 132.5 81.7 178.1 45.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A8S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 1 REMARK 900 RELATED ID: 5A8T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 2 REMARK 900 RELATED ID: 5A8U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA DBREF 5A8V A 2 253 UNP P36701 PYHD_CPVOP 2 253 SEQADV 5A8V ACE A 1 UNP P36701 ACETYLATION SEQRES 1 A 253 ACE HIS GLY LEU ASP ASP ALA GLN TYR LEU GLN GLN LYS SEQRES 2 A 253 ALA HIS ASN LYS ARG ILE SER GLU PHE ARG SER SER SER SEQRES 3 A 253 ASN SER GLY ILE ASN VAL THR VAL VAL LEU LYS TYR THR SEQRES 4 A 253 ASN GLY VAL VAL GLN VAL TYR ASN TRP GLN GLY THR GLU SEQRES 5 A 253 VAL ILE ALA GLY SER LEU ASN ARG GLN LEU MSE LYS PHE SEQRES 6 A 253 PRO ASN TYR MSE ASN PRO ASP LYS HIS GLY ARG ILE GLU SEQRES 7 A 253 TRP PRO GLY GLU GLY VAL GLU HIS GLN HIS GLY LEU ILE SEQRES 8 A 253 ARG SER ASN GLY GLY ASN GLY SER TYR ASP ILE GLY ALA SEQRES 9 A 253 GLY ASP PRO TYR ALA MSE GLN PHE ILE VAL GLN GLY SER SEQRES 10 A 253 VAL ASP TRP ASN ALA THR ARG LEU ARG PHE PHE GLY PRO SEQRES 11 A 253 ASP GLY SER ARG TRP MSE PRO ASP ASP GLN GLY GLY ALA SEQRES 12 A 253 SER VAL ARG ALA GLY LEU LEU ASN ALA ALA GLU ASP ILE SEQRES 13 A 253 ILE ASN SER LYS MSE GLN PRO LEU TYR PHE CYS ASP ARG SEQRES 14 A 253 MSE ALA GLY LYS SER TYR TYR VAL ARG PHE ASP ASP LYS SEQRES 15 A 253 TYR ALA PRO ARG PHE PRO THR ILE GLY PHE GLU VAL TYR SEQRES 16 A 253 ARG TYR ARG VAL GLY ALA THR ASN GLU MSE GLY GLY GLU SEQRES 17 A 253 SER ALA ARG THR ALA VAL ALA SER LEU ILE SER PHE PRO SEQRES 18 A 253 THR PHE SER THR ALA TYR VAL ASN GLU LYS VAL ALA VAL SEQRES 19 A 253 GLU ASN PHE PHE GLN PRO ARG GLU LEU VAL TYR GLN ASN SEQRES 20 A 253 SER TYR GLY TYR THR VAL MODRES 5A8V MSE A 63 MET SELENOMETHIONINE MODRES 5A8V MSE A 69 MET SELENOMETHIONINE MODRES 5A8V MSE A 110 MET SELENOMETHIONINE MODRES 5A8V MSE A 136 MET SELENOMETHIONINE MODRES 5A8V MSE A 161 MET SELENOMETHIONINE MODRES 5A8V MSE A 170 MET SELENOMETHIONINE MODRES 5A8V MSE A 205 MET SELENOMETHIONINE HET ACE A 1 3 HET MSE A 63 8 HET MSE A 69 8 HET MSE A 110 8 HET MSE A 136 8 HET MSE A 161 8 HET MSE A 170 8 HET MSE A 205 8 HET CA A1254 1 HETNAM ACE ACETYL GROUP HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 ACE C2 H4 O FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 CA CA 2+ FORMUL 3 HOH *112(H2 O) HELIX 1 1 ASP A 5 ARG A 23 1 19 HELIX 2 2 ASN A 59 LYS A 64 1 6 HELIX 3 3 GLY A 83 ARG A 92 1 10 HELIX 4 4 ASP A 119 THR A 123 5 5 HELIX 5 5 ALA A 152 ASP A 155 5 4 HELIX 6 6 ILE A 157 MSE A 161 5 5 HELIX 7 7 GLY A 206 GLU A 208 5 3 HELIX 8 8 SER A 209 SER A 216 1 8 HELIX 9 9 ASN A 229 PHE A 237 1 9 HELIX 10 10 PHE A 237 GLU A 242 1 6 SHEET 1 AA 6 GLN A 162 PHE A 166 0 SHEET 2 AA 6 ARG A 169 ARG A 178 -1 O ARG A 169 N PHE A 166 SHEET 3 AA 6 ALA A 109 GLN A 115 -1 O MSE A 110 N VAL A 177 SHEET 4 AA 6 ILE A 30 LYS A 37 -1 O ASN A 31 N GLN A 115 SHEET 5 AA 6 VAL A 43 GLY A 50 -1 O GLN A 44 N LEU A 36 SHEET 6 AA 6 PHE A 223 TYR A 227 -1 O PHE A 223 N ASN A 47 SHEET 1 AB 3 VAL A 53 LEU A 58 0 SHEET 2 AB 3 THR A 189 TYR A 195 -1 O ILE A 190 N LEU A 58 SHEET 3 AB 3 ARG A 124 PHE A 128 -1 O ARG A 124 N GLU A 193 SHEET 1 AC 2 ARG A 134 MSE A 136 0 SHEET 2 AC 2 GLY A 141 ALA A 143 -1 O GLY A 141 N MSE A 136 LINK C ACE A 1 N HIS A 2 1555 1555 1.34 LINK C LEU A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N LYS A 64 1555 1555 1.33 LINK C TYR A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N ASN A 70 1555 1555 1.32 LINK C ALA A 109 N MSE A 110 1555 1555 1.32 LINK C MSE A 110 N GLN A 111 1555 1555 1.33 LINK C TRP A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N PRO A 137 1555 1555 1.34 LINK C LYS A 160 N MSE A 161 1555 1555 1.33 LINK C MSE A 161 N GLN A 162 1555 1555 1.33 LINK C ARG A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N ALA A 171 1555 1555 1.33 LINK C GLU A 204 N MSE A 205 1555 1555 1.33 LINK C MSE A 205 N GLY A 206 1555 1555 1.32 LINK CA CA A1254 O ASP A 168 1555 18555 2.51 LINK CA CA A1254 OD2 ASP A 138 1555 2655 2.92 LINK CA CA A1254 O ASP A 168 1555 20545 2.51 LINK CA CA A1254 OD1 ASP A 138 1555 2655 2.74 LINK CA CA A1254 OD2 ASP A 138 1555 1555 2.92 LINK CA CA A1254 OD1 ASP A 138 1555 1555 2.74 CISPEP 1 HIS A 2 GLY A 3 0 -7.96 CISPEP 2 PHE A 65 PRO A 66 0 -3.14 SITE 1 AC1 2 ASP A 138 ASP A 168 CRYST1 102.054 102.054 102.054 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009799 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009799 0.00000 HETATM 1 C ACE A 1 50.446 56.053 -18.566 1.00 27.83 C HETATM 2 O ACE A 1 49.720 55.071 -18.766 1.00 27.20 O HETATM 3 CH3 ACE A 1 51.402 56.553 -19.655 1.00 18.60 C