HEADER VIRAL PROTEIN 17-JUL-15 5A99 TITLE CRYSTAL STRUCTURE OF OPEROPHTERA BRUMATA CPV19 POLYHEDRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OPEROPHTERA BRUMATA CYPOVIRUS 19; SOURCE 3 ORGANISM_TAXID: 352246; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS VIRAL PROTEIN, INSECT VIRUS OCCLUSION BODY, MICROCRYSTAL EXPDTA X-RAY DIFFRACTION AUTHOR X.JI,D.AXFORD,R.OWEN,G.EVANS,H.M.GINN,G.SUTTON,D.I.STUART REVDAT 3 06-NOV-24 5A99 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV LINK ATOM REVDAT 2 14-OCT-15 5A99 1 JRNL REVDAT 1 02-SEP-15 5A99 0 JRNL AUTH X.JI,D.AXFORD,R.OWEN,G.EVANS,H.M.GINN,G.SUTTON,D.I.STUART JRNL TITL POLYHEDRA STRUCTURES AND THE EVOLUTION OF THE INSECT JRNL TITL 2 VIRUSES. JRNL REF J.STRUCT.BIOL. V. 192 88 2015 JRNL REFN ISSN 1047-8477 JRNL PMID 26291392 JRNL DOI 10.1016/J.JSB.2015.08.009 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.0 REMARK 3 NUMBER OF REFLECTIONS : 20976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9514 - 2.8900 1.00 3989 181 0.1113 0.1586 REMARK 3 2 2.8900 - 2.2939 1.00 3853 198 0.1243 0.1648 REMARK 3 3 2.2939 - 2.0040 1.00 3817 218 0.1581 0.2338 REMARK 3 4 2.0040 - 1.8207 0.95 3633 190 0.2511 0.3582 REMARK 3 5 1.8207 - 1.6902 0.72 2741 155 0.3319 0.3821 REMARK 3 6 1.6902 - 1.5906 0.39 1487 77 0.3698 0.3923 REMARK 3 7 1.5906 - 1.5109 0.11 411 26 0.4163 0.5024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.30 REMARK 3 SHRINKAGE RADIUS : 0.05 REMARK 3 K_SOL : 0.52 REMARK 3 B_SOL : 56.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2145 REMARK 3 ANGLE : 1.124 2912 REMARK 3 CHIRALITY : 0.059 290 REMARK 3 PLANARITY : 0.004 380 REMARK 3 DIHEDRAL : 14.907 798 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 34 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 51.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.37000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 12.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 21.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.36000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.36000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.36000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.36000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.36000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.36000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.36000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.36000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.36000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.36000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.36000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.36000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.36000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.36000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.36000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.36000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.36000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.36000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.36000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.36000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.36000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.36000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.36000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.36000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.36000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.36000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.36000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.36000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.36000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.36000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.36000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.36000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.36000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.36000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.36000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2026 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2028 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2029 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2051 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2063 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2082 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2087 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2125 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2018 O HOH A 2019 1.86 REMARK 500 O HOH A 2034 O HOH A 2038 2.05 REMARK 500 O HOH A 2223 O HOH A 2224 2.14 REMARK 500 O HOH A 2152 O HOH A 2189 2.15 REMARK 500 O HOH A 2138 O HOH A 2139 2.15 REMARK 500 NH1 ARG A 164 O HOH A 2040 2.15 REMARK 500 O HOH A 2035 O HOH A 2107 2.16 REMARK 500 O HOH A 2036 O HOH A 2045 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 241 O1G ATP A 1250 2665 1.55 REMARK 500 O HOH A 2042 O HOH A 2214 22555 1.70 REMARK 500 OD2 ASP A 17 OD2 ASP A 17 4565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 55 -46.92 -137.12 REMARK 500 ASN A 74 61.83 -107.93 REMARK 500 ASN A 213 44.27 -109.66 REMARK 500 TYR A 232 -67.47 -137.80 REMARK 500 ASP A 245 43.21 73.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2051 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A2066 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A2071 DISTANCE = 6.20 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1251 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 21 OE2 REMARK 620 2 ASP A 245 O 80.5 REMARK 620 3 ASP A 245 OD2 92.9 86.7 REMARK 620 4 ATP A1250 O1G 175.2 99.4 91.8 REMARK 620 5 ATP A1250 O1B 89.6 87.3 173.0 85.6 REMARK 620 6 HOH A2233 O 89.7 169.8 96.5 90.2 90.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A8S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 1 REMARK 900 RELATED ID: 5A8T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 2 REMARK 900 RELATED ID: 5A8U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA REMARK 900 RELATED ID: 5A8V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA WITH SEMET REMARK 900 SUBSTITUTION REMARK 900 RELATED ID: 5A96 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LYMANTRIA DISPAR CPV14 POLYHEDRA REMARK 900 RELATED ID: 5A98 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRICHOPLUSIA NI CPV15 POLYHEDRA REMARK 900 RELATED ID: 5A9A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SIMULIUM UBIQUITUM CPV20 POLYHEDRA REMARK 900 RELATED ID: 5A9B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOMBYX MORI CPV1 POLYHEDRA BASE DOMAIN DELETED REMARK 900 MUTANT REMARK 900 RELATED ID: 5A9C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA BASE DOMAIN REMARK 900 DELETED MUTANT DBREF 5A99 A 2 248 UNP Q30C66 Q30C66_9REOV 2 248 SEQADV 5A99 ACE A 1 UNP Q30C66 EXPRESSION TAG SEQRES 1 A 248 ACE ALA TYR HIS GLY ALA PRO HIS GLU ILE ARG ASN ARG SEQRES 2 A 248 TYR GLN HIS ASP ARG ALA LEU GLU ILE LEU ASP ARG GLN SEQRES 3 A 248 TYR SER ARG ASP SER TYR ILE TYR ALA HIS LEU VAL LEU SEQRES 4 A 248 TYR MET LYS ASP SER SER LEU GLN ILE ILE ARG ALA GLN SEQRES 5 A 248 ASN PRO ARG ILE ILE SER ARG SER TYR ASN TRP ASP GLN SEQRES 6 A 248 LEU VAL LEU PRO ASN TYR ARG ILE ASN ASP GLU LYS TYR SEQRES 7 A 248 TYR GLY ARG SER GLU LEU ARG HIS LEU ARG ASP GLY LEU SEQRES 8 A 248 LEU SER ASP ASN GLY GLY ARG SER GLN HIS ASP LYS GLY SEQRES 9 A 248 MET ASN GLU PRO VAL SER PHE GLN PHE ILE VAL GLN GLY SEQRES 10 A 248 ASP VAL ASP LEU GLY SER VAL TRP PHE ARG VAL ASN LYS SEQRES 11 A 248 TYR ASN ASN ILE SER SER SER SER PHE ALA MET GLU ALA SEQRES 12 A 248 VAL SER GLU ARG ALA GLU ASN TYR ILE GLY PRO LEU MET SEQRES 13 A 248 ARG PRO ILE ARG TYR PHE ASP ARG GLU MET ALA TRP SER SEQRES 14 A 248 TYR VAL GLY LYS PHE ASP GLY ILE LEU PHE PRO CYS HIS SEQRES 15 A 248 PRO VAL ILE SER PHE ALA VAL GLN ARG ALA ASN ARG ASP SEQRES 16 A 248 GLY ALA GLY LEU TYR ASN GLY GLU ASN ILE TYR LYS THR SEQRES 17 A 248 LEU ILE ARG LEU ASN ASP SER PRO ASP LEU TYR ALA HIS SEQRES 18 A 248 TYR ASP ASP GLU GLU THR SER VAL ALA ASN TYR TRP THR SEQRES 19 A 248 ARG PHE GLN TYR LEU TYR ARG THR LYS CYS ASP ILE ALA SEQRES 20 A 248 VAL HET ACE A 1 3 HET ATP A1250 43 HET MG A1251 1 HETNAM ACE ACETYL GROUP HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 ACE C2 H4 O FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *235(H2 O) HELIX 1 1 GLU A 9 GLN A 26 1 18 HELIX 2 2 ASN A 62 LEU A 66 5 5 HELIX 3 3 GLY A 80 SER A 93 1 14 HELIX 4 4 ASP A 120 VAL A 124 5 5 HELIX 5 5 ARG A 147 TYR A 151 5 5 HELIX 6 6 ILE A 152 MET A 156 5 5 HELIX 7 7 ASN A 204 ARG A 211 1 8 HELIX 8 8 ASP A 224 TYR A 232 1 9 HELIX 9 9 TYR A 232 GLN A 237 1 6 SHEET 1 AA 6 ARG A 157 TYR A 161 0 SHEET 2 AA 6 ARG A 164 LYS A 173 -1 O ARG A 164 N TYR A 161 SHEET 3 AA 6 SER A 110 GLN A 116 -1 O PHE A 111 N GLY A 172 SHEET 4 AA 6 ILE A 33 TYR A 40 -1 O TYR A 34 N GLN A 116 SHEET 5 AA 6 LEU A 46 ASN A 53 -1 O GLN A 47 N LEU A 39 SHEET 6 AA 6 LEU A 218 TYR A 222 -1 O LEU A 218 N ARG A 50 SHEET 1 AB 3 ILE A 56 TYR A 61 0 SHEET 2 AB 3 VAL A 184 GLN A 190 -1 O ILE A 185 N TYR A 61 SHEET 3 AB 3 TRP A 125 ASN A 129 -1 O TRP A 125 N ALA A 188 LINK C ACE A 1 N ALA A 2 1555 1555 1.33 LINK OE2 GLU A 21 MG MG A1251 17554 1555 2.17 LINK O ASP A 245 MG MG A1251 2665 1555 2.24 LINK OD2 ASP A 245 MG MG A1251 2665 1555 2.25 LINK O1G ATP A1250 MG MG A1251 1555 1555 2.14 LINK O1B ATP A1250 MG MG A1251 1555 1555 2.19 LINK MG MG A1251 O HOH A2233 1555 1555 2.09 CISPEP 1 LEU A 68 PRO A 69 0 11.74 SITE 1 AC1 4 GLU A 21 ASP A 245 ATP A1250 HOH A2233 SITE 1 AC2 23 ACE A 1 ALA A 2 ARG A 18 GLU A 21 SITE 2 AC2 23 ARG A 25 SER A 136 GLU A 142 ARG A 147 SITE 3 AC2 23 GLU A 149 ARG A 160 GLU A 165 ARG A 241 SITE 4 AC2 23 ASP A 245 ILE A 246 ALA A 247 MG A1251 SITE 5 AC2 23 HOH A2157 HOH A2173 HOH A2174 HOH A2180 SITE 6 AC2 23 HOH A2231 HOH A2232 HOH A2233 CRYST1 102.720 102.720 102.720 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009735 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009735 0.00000 HETATM 1 C ACE A 1 58.111 71.721 -8.655 1.00 16.62 C HETATM 2 O ACE A 1 58.245 70.706 -9.343 1.00 19.60 O HETATM 3 CH3 ACE A 1 58.964 72.951 -8.901 1.00 13.32 C