HEADER TRANSFERASE 21-JUL-15 5A9F TITLE CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF HUMAN DNA POLYMERASE THETA TITLE 2 IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE THETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HELICASE DOMAIN, RESIDUES 67-894; COMPND 5 SYNONYM: DNA POLYMERASE ETA; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TRANSFERASE, POLYMERASE, HELICASE, POLQ, DNA REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR J.A.NEWMAN,C.D.O.COOPER,H.AITKENHEAD,D.M.PINKAS,K.KUPINSKA,N.BURGESS- AUTHOR 2 BROWN,F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA,O.GILEADI REVDAT 2 10-JAN-24 5A9F 1 REMARK LINK REVDAT 1 16-DEC-15 5A9F 0 JRNL AUTH J.A.NEWMAN,C.D.O.COOPER,H.AITKENHEAD,O.GILEADI JRNL TITL STRUCTURE OF THE HELICASE DOMAIN OF DNA POLYMERASE THETA JRNL TITL 2 REVEALS A POSSIBLE ROLE IN THE MICROHOMOLOGY-MEDIATED JRNL TITL 3 END-JOINING PATHWAY. JRNL REF STRUCTURE V. 23 2319 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26636256 JRNL DOI 10.1016/J.STR.2015.10.014 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 20842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1164 - 6.3960 0.96 2531 149 0.1877 0.2240 REMARK 3 2 6.3960 - 5.0784 0.99 2527 129 0.2413 0.3130 REMARK 3 3 5.0784 - 4.4369 0.97 2440 130 0.2079 0.2529 REMARK 3 4 4.4369 - 4.0314 0.98 2460 119 0.2266 0.2794 REMARK 3 5 4.0314 - 3.7426 0.99 2446 129 0.2537 0.3042 REMARK 3 6 3.7426 - 3.5220 0.99 2465 139 0.2666 0.3533 REMARK 3 7 3.5220 - 3.3457 0.99 2444 139 0.2984 0.3322 REMARK 3 8 3.3457 - 3.2001 0.98 2464 131 0.3219 0.3523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 108.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6187 REMARK 3 ANGLE : 1.137 8380 REMARK 3 CHIRALITY : 0.046 985 REMARK 3 PLANARITY : 0.004 1051 REMARK 3 DIHEDRAL : 12.848 2257 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20899 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5AGA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 0.2M POTASSIUM CITRATE REMARK 280 TRIBASIC REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.88350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.87000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.34850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.88350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.87000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.34850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.88350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.87000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.34850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.88350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.87000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.34850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 168680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 133.74000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 133.74000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 65 REMARK 465 MET A 66 REMARK 465 SER A 246 REMARK 465 CYS A 247 REMARK 465 GLN A 248 REMARK 465 ALA A 249 REMARK 465 ASP A 250 REMARK 465 LEU A 251 REMARK 465 ALA A 252 REMARK 465 SER A 253 REMARK 465 SER A 254 REMARK 465 LEU A 255 REMARK 465 GLU A 369 REMARK 465 GLY A 370 REMARK 465 LEU A 371 REMARK 465 VAL A 372 REMARK 465 LYS A 373 REMARK 465 PRO A 374 REMARK 465 ARG A 522 REMARK 465 GLU A 523 REMARK 465 LYS A 564 REMARK 465 GLU A 565 REMARK 465 GLY A 566 REMARK 465 LYS A 567 REMARK 465 GLN A 568 REMARK 465 GLY A 569 REMARK 465 ILE A 570 REMARK 465 GLN A 571 REMARK 465 ARG A 572 REMARK 465 ASN A 573 REMARK 465 GLN A 574 REMARK 465 GLU A 575 REMARK 465 SER A 576 REMARK 465 VAL A 577 REMARK 465 GLN A 578 REMARK 465 LEU A 579 REMARK 465 ALA A 600 REMARK 465 SER A 601 REMARK 465 ASP A 602 REMARK 465 GLY A 603 REMARK 465 THR A 604 REMARK 465 ALA A 845 REMARK 465 VAL A 846 REMARK 465 ASP A 847 REMARK 465 GLU A 848 REMARK 465 GLU A 849 REMARK 465 GLU A 850 REMARK 465 VAL A 892 REMARK 465 GLU A 893 REMARK 465 MET A 894 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 LYS A 78 CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 MET A 136 CG SD CE REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 LYS A 167 CD CE NZ REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 ASP A 322 CG OD1 OD2 REMARK 470 LYS A 348 CE NZ REMARK 470 GLN A 367 CG CD OE1 NE2 REMARK 470 ARG A 467 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 484 CG CD CE NZ REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 ARG A 516 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 521 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 583 CG CD OE1 OE2 REMARK 470 GLU A 599 CG CD OE1 OE2 REMARK 470 LYS A 701 CG CD CE NZ REMARK 470 ARG A 705 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 840 CG CD CE NZ REMARK 470 LYS A 844 CG CD CE NZ REMARK 470 GLU A 854 CG CD OE1 OE2 REMARK 470 GLU A 855 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 122 O2A ADP A 1892 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 315 C - N - CA ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 92 -147.06 -96.08 REMARK 500 PHE A 161 70.29 -114.64 REMARK 500 GLN A 162 -17.87 -143.36 REMARK 500 ASP A 169 -169.19 -124.09 REMARK 500 ASP A 185 -46.40 -131.89 REMARK 500 LYS A 206 42.99 -93.77 REMARK 500 GLU A 217 72.84 55.89 REMARK 500 ALA A 258 -122.53 59.33 REMARK 500 SER A 265 -164.37 -162.12 REMARK 500 THR A 267 103.58 -59.70 REMARK 500 LEU A 293 76.40 -101.84 REMARK 500 ARG A 311 132.68 -170.15 REMARK 500 GLU A 323 78.38 51.89 REMARK 500 ASP A 324 42.00 -88.38 REMARK 500 GLU A 376 -167.08 -104.34 REMARK 500 ILE A 381 -151.12 -130.25 REMARK 500 ARG A 396 43.24 -84.12 REMARK 500 HIS A 416 112.04 -160.97 REMARK 500 THR A 443 -168.18 -106.28 REMARK 500 VAL A 486 -56.50 -124.61 REMARK 500 LYS A 607 81.07 60.59 REMARK 500 ALA A 704 -108.94 51.35 REMARK 500 ARG A 705 17.34 56.65 REMARK 500 HIS A 710 47.90 -88.75 REMARK 500 SER A 779 5.64 -69.60 REMARK 500 ASN A 803 -162.07 -100.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1893 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 797 O REMARK 620 2 VAL A 799 O 60.9 REMARK 620 3 SER A 800 O 129.2 69.5 REMARK 620 4 LEU A 802 O 84.4 76.8 95.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1892 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1893 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1894 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A9J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF HUMAN DNA POLYMERASE REMARK 900 THETA, APO-FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST TWO RESIDUES REMAIN AFTER CLEAVAGE OF PURIFICATION REMARK 999 TAG DBREF 5A9F A 67 894 UNP O75417 DPOLQ_HUMAN 67 894 SEQADV 5A9F SER A 65 UNP O75417 EXPRESSION TAG SEQADV 5A9F MET A 66 UNP O75417 EXPRESSION TAG SEQRES 1 A 830 SER MET ASP LYS LEU LEU LEU ALA ASN TRP GLY LEU PRO SEQRES 2 A 830 LYS ALA VAL LEU GLU LYS TYR HIS SER PHE GLY VAL LYS SEQRES 3 A 830 LYS MET PHE GLU TRP GLN ALA GLU CYS LEU LEU LEU GLY SEQRES 4 A 830 GLN VAL LEU GLU GLY LYS ASN LEU VAL TYR SER ALA PRO SEQRES 5 A 830 THR SER ALA GLY LYS THR LEU VAL ALA GLU LEU LEU ILE SEQRES 6 A 830 LEU LYS ARG VAL LEU GLU MET ARG LYS LYS ALA LEU PHE SEQRES 7 A 830 ILE LEU PRO PHE VAL SER VAL ALA LYS GLU LYS LYS TYR SEQRES 8 A 830 TYR LEU GLN SER LEU PHE GLN GLU VAL GLY ILE LYS VAL SEQRES 9 A 830 ASP GLY TYR MET GLY SER THR SER PRO SER ARG HIS PHE SEQRES 10 A 830 SER SER LEU ASP ILE ALA VAL CYS THR ILE GLU ARG ALA SEQRES 11 A 830 ASN GLY LEU ILE ASN ARG LEU ILE GLU GLU ASN LYS MET SEQRES 12 A 830 ASP LEU LEU GLY MET VAL VAL VAL ASP GLU LEU HIS MET SEQRES 13 A 830 LEU GLY ASP SER HIS ARG GLY TYR LEU LEU GLU LEU LEU SEQRES 14 A 830 LEU THR LYS ILE CYS TYR ILE THR ARG LYS SER ALA SER SEQRES 15 A 830 CYS GLN ALA ASP LEU ALA SER SER LEU SER ASN ALA VAL SEQRES 16 A 830 GLN ILE VAL GLY MET SER ALA THR LEU PRO ASN LEU GLU SEQRES 17 A 830 LEU VAL ALA SER TRP LEU ASN ALA GLU LEU TYR HIS THR SEQRES 18 A 830 ASP PHE ARG PRO VAL PRO LEU LEU GLU SER VAL LYS VAL SEQRES 19 A 830 GLY ASN SER ILE TYR ASP SER SER MET LYS LEU VAL ARG SEQRES 20 A 830 GLU PHE GLU PRO MET LEU GLN VAL LYS GLY ASP GLU ASP SEQRES 21 A 830 HIS VAL VAL SER LEU CYS TYR GLU THR ILE CYS ASP ASN SEQRES 22 A 830 HIS SER VAL LEU LEU PHE CYS PRO SER LYS LYS TRP CYS SEQRES 23 A 830 GLU LYS LEU ALA ASP ILE ILE ALA ARG GLU PHE TYR ASN SEQRES 24 A 830 LEU HIS HIS GLN ALA GLU GLY LEU VAL LYS PRO SER GLU SEQRES 25 A 830 CYS PRO PRO VAL ILE LEU GLU GLN LYS GLU LEU LEU GLU SEQRES 26 A 830 VAL MET ASP GLN LEU ARG ARG LEU PRO SER GLY LEU ASP SEQRES 27 A 830 SER VAL LEU GLN LYS THR VAL PRO TRP GLY VAL ALA PHE SEQRES 28 A 830 HIS HIS ALA GLY LEU THR PHE GLU GLU ARG ASP ILE ILE SEQRES 29 A 830 GLU GLY ALA PHE ARG GLN GLY LEU ILE ARG VAL LEU ALA SEQRES 30 A 830 ALA THR SER THR LEU SER SER GLY VAL ASN LEU PRO ALA SEQRES 31 A 830 ARG ARG VAL ILE ILE ARG THR PRO ILE PHE GLY GLY ARG SEQRES 32 A 830 PRO LEU ASP ILE LEU THR TYR LYS GLN MET VAL GLY ARG SEQRES 33 A 830 ALA GLY ARG LYS GLY VAL ASP THR VAL GLY GLU SER ILE SEQRES 34 A 830 LEU ILE CYS LYS ASN SER GLU LYS SER LYS GLY ILE ALA SEQRES 35 A 830 LEU LEU GLN GLY SER LEU LYS PRO VAL ARG SER CYS LEU SEQRES 36 A 830 GLN ARG ARG GLU GLY GLU GLU VAL THR GLY SER MET ILE SEQRES 37 A 830 ARG ALA ILE LEU GLU ILE ILE VAL GLY GLY VAL ALA SER SEQRES 38 A 830 THR SER GLN ASP MET HIS THR TYR ALA ALA CYS THR PHE SEQRES 39 A 830 LEU ALA ALA SER MET LYS GLU GLY LYS GLN GLY ILE GLN SEQRES 40 A 830 ARG ASN GLN GLU SER VAL GLN LEU GLY ALA ILE GLU ALA SEQRES 41 A 830 CYS VAL MET TRP LEU LEU GLU ASN GLU PHE ILE GLN SER SEQRES 42 A 830 THR GLU ALA SER ASP GLY THR GLU GLY LYS VAL TYR HIS SEQRES 43 A 830 PRO THR HIS LEU GLY SER ALA THR LEU SER SER SER LEU SEQRES 44 A 830 SER PRO ALA ASP THR LEU ASP ILE PHE ALA ASP LEU GLN SEQRES 45 A 830 ARG ALA MET LYS GLY PHE VAL LEU GLU ASN ASP LEU HIS SEQRES 46 A 830 ILE LEU TYR LEU VAL THR PRO MET PHE GLU ASP TRP THR SEQRES 47 A 830 THR ILE ASP TRP TYR ARG PHE PHE CYS LEU TRP GLU LYS SEQRES 48 A 830 LEU PRO THR SER MET LYS ARG VAL ALA GLU LEU VAL GLY SEQRES 49 A 830 VAL GLU GLU GLY PHE LEU ALA ARG CYS VAL LYS GLY LYS SEQRES 50 A 830 VAL VAL ALA ARG THR GLU ARG GLN HIS ARG GLN MET ALA SEQRES 51 A 830 ILE HIS LYS ARG PHE PHE THR SER LEU VAL LEU LEU ASP SEQRES 52 A 830 LEU ILE SER GLU VAL PRO LEU ARG GLU ILE ASN GLN LYS SEQRES 53 A 830 TYR GLY CYS ASN ARG GLY GLN ILE GLN SER LEU GLN GLN SEQRES 54 A 830 SER ALA ALA VAL TYR ALA GLY MET ILE THR VAL PHE SER SEQRES 55 A 830 ASN ARG LEU GLY TRP HIS ASN MET GLU LEU LEU LEU SER SEQRES 56 A 830 GLN PHE GLN LYS ARG LEU THR PHE GLY ILE GLN ARG GLU SEQRES 57 A 830 LEU CYS ASP LEU VAL ARG VAL SER LEU LEU ASN ALA GLN SEQRES 58 A 830 ARG ALA ARG VAL LEU TYR ALA SER GLY PHE HIS THR VAL SEQRES 59 A 830 ALA ASP LEU ALA ARG ALA ASN ILE VAL GLU VAL GLU VAL SEQRES 60 A 830 ILE LEU LYS ASN ALA VAL PRO PHE LYS SER ALA ARG LYS SEQRES 61 A 830 ALA VAL ASP GLU GLU GLU GLU ALA VAL GLU GLU ARG ARG SEQRES 62 A 830 ASN MET ARG THR ILE TRP VAL THR GLY ARG LYS GLY LEU SEQRES 63 A 830 THR GLU ARG GLU ALA ALA ALA LEU ILE VAL GLU GLU ALA SEQRES 64 A 830 ARG MET ILE LEU GLN GLN ASP LEU VAL GLU MET HET ADP A1892 27 HET K A1893 1 HET MG A1894 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 K K 1+ FORMUL 4 MG MG 2+ HELIX 1 1 LEU A 71 TRP A 74 5 4 HELIX 2 2 PRO A 77 HIS A 85 1 9 HELIX 3 3 PHE A 93 LEU A 102 1 10 HELIX 4 4 GLY A 120 LEU A 134 1 15 HELIX 5 5 PHE A 146 PHE A 161 1 16 HELIX 6 6 HIS A 180 LEU A 184 5 5 HELIX 7 7 THR A 190 GLU A 204 1 15 HELIX 8 8 ASN A 205 ASP A 208 5 4 HELIX 9 9 GLU A 217 GLY A 222 5 6 HELIX 10 10 TYR A 228 SER A 244 1 17 HELIX 11 11 ASN A 270 LEU A 278 1 9 HELIX 12 12 HIS A 325 ASP A 336 1 12 HELIX 13 13 SER A 346 HIS A 366 1 21 HELIX 14 14 GLU A 383 ARG A 396 1 14 HELIX 15 15 ASP A 402 VAL A 409 1 8 HELIX 16 16 THR A 421 GLN A 434 1 14 HELIX 17 17 THR A 443 SER A 448 1 6 HELIX 18 18 ASP A 470 GLY A 479 1 10 HELIX 19 19 GLU A 500 GLY A 510 1 11 HELIX 20 20 THR A 528 GLY A 541 1 14 HELIX 21 21 SER A 547 THR A 557 1 11 HELIX 22 22 GLY A 580 ASN A 592 1 13 HELIX 23 23 THR A 612 SER A 621 1 10 HELIX 24 24 SER A 624 MET A 639 1 16 HELIX 25 25 ASP A 647 VAL A 654 1 8 HELIX 26 26 ASP A 665 LYS A 675 1 11 HELIX 27 27 PRO A 677 GLY A 688 1 12 HELIX 28 28 GLU A 690 LYS A 699 1 10 HELIX 29 29 ARG A 711 ILE A 729 1 19 HELIX 30 30 PRO A 733 GLY A 742 1 10 HELIX 31 31 ASN A 744 LEU A 769 1 26 HELIX 32 32 TRP A 771 SER A 779 1 9 HELIX 33 33 GLN A 780 GLY A 788 1 9 HELIX 34 34 GLN A 790 ASP A 795 5 6 HELIX 35 35 ASP A 795 VAL A 799 5 5 HELIX 36 36 ASN A 803 ALA A 812 1 10 HELIX 37 37 THR A 817 ARG A 823 1 7 HELIX 38 38 ASN A 825 ASN A 835 1 11 HELIX 39 39 THR A 871 ASP A 890 1 20 SHEET 1 AA 7 VAL A 168 TYR A 171 0 SHEET 2 AA 7 ILE A 186 CYS A 189 1 O ILE A 186 N ASP A 169 SHEET 3 AA 7 LYS A 139 ILE A 143 1 O ALA A 140 N ALA A 187 SHEET 4 AA 7 LEU A 210 VAL A 215 1 N GLY A 211 O LYS A 139 SHEET 5 AA 7 GLN A 260 SER A 265 1 O GLN A 260 N VAL A 213 SHEET 6 AA 7 ASN A 110 SER A 114 1 O LEU A 111 N GLY A 263 SHEET 7 AA 7 ALA A 280 HIS A 284 1 O GLU A 281 N VAL A 112 SHEET 1 AB 8 LEU A 309 GLU A 312 0 SHEET 2 AB 8 SER A 301 TYR A 303 -1 O ILE A 302 N VAL A 310 SHEET 3 AB 8 LEU A 292 VAL A 298 -1 O VAL A 296 N TYR A 303 SHEET 4 AB 8 GLY A 490 CYS A 496 1 O GLY A 490 N LEU A 293 SHEET 5 AB 8 ARG A 456 ILE A 459 1 O VAL A 457 N ILE A 493 SHEET 6 AB 8 VAL A 340 PHE A 343 1 O LEU A 341 N ILE A 458 SHEET 7 AB 8 VAL A 439 ALA A 442 1 O LEU A 440 N LEU A 342 SHEET 8 AB 8 VAL A 413 HIS A 416 1 O ALA A 414 N ALA A 441 SHEET 1 AC 2 ILE A 463 PHE A 464 0 SHEET 2 AC 2 ARG A 467 PRO A 468 -1 O ARG A 467 N PHE A 464 SHEET 1 AD 2 ILE A 595 THR A 598 0 SHEET 2 AD 2 VAL A 608 PRO A 611 -1 O VAL A 608 N THR A 598 LINK O VAL A 797 K K A1893 1555 1555 3.26 LINK O VAL A 799 K K A1893 1555 1555 3.00 LINK O SER A 800 K K A1893 1555 1555 3.09 LINK O LEU A 802 K K A1893 1555 1555 2.89 SITE 1 AC1 7 GLN A 96 SER A 118 ALA A 119 GLY A 120 SITE 2 AC1 7 LYS A 121 THR A 122 LEU A 123 SITE 1 AC2 5 PHE A 787 VAL A 797 VAL A 799 SER A 800 SITE 2 AC2 5 LEU A 802 SITE 1 AC3 1 ASP A 216 CRYST1 115.767 133.740 162.697 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008638 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006146 0.00000