HEADER OXIDOREDUCTASE 21-JUL-15 5A9G TITLE MANGANESE SUPEROXIDE DISMUTASE FROM SPHINGOBACTERIUM SP. T2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGANESE SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBACTERIUM SPIRITIVORUM; SOURCE 3 ORGANISM_TAXID: 258; SOURCE 4 ATCC: ATCC 33300; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET151 KEYWDS OXIDOREDUCTASE, LIGNIN VALORISATION, LIGNIN OXIDATION, MANGANESE KEYWDS 2 SUPEROXIDE DISMUTASE, SPHINGOBACTERIUM EXPDTA X-RAY DIFFRACTION AUTHOR G.M.M.RASHID,C.R.TAYLOR,Y.LIU,X.ZHANG,D.REA,V.FULOP,T.D.H.BUGG REVDAT 3 10-JAN-24 5A9G 1 REMARK LINK REVDAT 2 28-OCT-15 5A9G 1 JRNL REVDAT 1 05-AUG-15 5A9G 0 JRNL AUTH G.M.RASHID,C.R.TAYLOR,Y.LIU,X.ZHANG,D.REA,V.FULOP,T.D.H.BUGG JRNL TITL IDENTIFICATION OF MANGANESE SUPEROXIDE DISMUTASE FROM JRNL TITL 2 SPHINGOBACTERIUM SP. T2 AS A NOVEL BACTERIAL ENZYME FOR JRNL TITL 3 LIGNIN OXIDATION. JRNL REF ACS CHEM.BIOL. V. 10 2286 2015 JRNL REFN ISSN 1554-8929 JRNL PMID 26198187 JRNL DOI 10.1021/ACSCHEMBIO.5B00298 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 83589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3412 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4530 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3248 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 601 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.307 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3332 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3098 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4530 ; 1.692 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7140 ; 0.958 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 5.951 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;30.625 ;25.128 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;12.514 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.213 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 484 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3818 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 772 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3549 50.8059 10.8371 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: 0.0283 REMARK 3 T33: 0.0414 T12: -0.0020 REMARK 3 T13: -0.0079 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.3637 L22: 0.1150 REMARK 3 L33: 0.1617 L12: -0.0383 REMARK 3 L13: -0.1165 L23: 0.1041 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: -0.0001 S13: 0.0315 REMARK 3 S21: -0.0093 S22: -0.0146 S23: -0.0192 REMARK 3 S31: -0.0252 S32: 0.0180 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3256 45.4267 7.0422 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: 0.0310 REMARK 3 T33: 0.0334 T12: 0.0042 REMARK 3 T13: -0.0168 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.5168 L22: 0.2870 REMARK 3 L33: 0.0754 L12: -0.1887 REMARK 3 L13: 0.0811 L23: -0.1456 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: 0.0422 S13: -0.0120 REMARK 3 S21: -0.0089 S22: 0.0060 S23: 0.0313 REMARK 3 S31: 0.0083 S32: -0.0005 S33: -0.0159 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8396 48.4891 13.5646 REMARK 3 T TENSOR REMARK 3 T11: 0.0409 T22: 0.0250 REMARK 3 T33: 0.0297 T12: 0.0030 REMARK 3 T13: -0.0091 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.3241 L22: 0.0211 REMARK 3 L33: 0.1400 L12: 0.0322 REMARK 3 L13: 0.0728 L23: -0.0397 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.0123 S13: 0.0186 REMARK 3 S21: 0.0047 S22: -0.0038 S23: 0.0099 REMARK 3 S31: 0.0007 S32: 0.0139 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -3 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6846 23.1041 29.2923 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0389 REMARK 3 T33: 0.0344 T12: -0.0030 REMARK 3 T13: -0.0166 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.4603 L22: 0.2397 REMARK 3 L33: 0.2905 L12: 0.1299 REMARK 3 L13: 0.1539 L23: 0.1729 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.0312 S13: -0.0596 REMARK 3 S21: -0.0048 S22: -0.0128 S23: 0.0372 REMARK 3 S31: -0.0171 S32: 0.0249 S33: 0.0082 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 91 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6281 21.4860 22.8645 REMARK 3 T TENSOR REMARK 3 T11: 0.0268 T22: 0.0441 REMARK 3 T33: 0.0421 T12: -0.0004 REMARK 3 T13: -0.0129 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.7401 L22: 0.2497 REMARK 3 L33: 0.0788 L12: -0.1411 REMARK 3 L13: 0.0738 L23: -0.1220 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 0.0094 S13: -0.0670 REMARK 3 S21: -0.0211 S22: -0.0149 S23: -0.0221 REMARK 3 S31: -0.0079 S32: 0.0238 S33: 0.0240 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 151 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1872 26.3219 28.2666 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: 0.0477 REMARK 3 T33: 0.0384 T12: -0.0019 REMARK 3 T13: -0.0193 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.2569 L22: 0.0612 REMARK 3 L33: 0.0664 L12: 0.0855 REMARK 3 L13: -0.1258 L23: -0.0302 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: -0.0565 S13: -0.0305 REMARK 3 S21: -0.0159 S22: -0.0286 S23: -0.0212 REMARK 3 S31: -0.0169 S32: 0.0284 S33: 0.0135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.U VALUES WITH TLS ADDED REMARK 4 REMARK 4 5A9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87001 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2RCV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 0.2 M DI-AMMONIUM REMARK 280 HYDROGEN CITRATE, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.47000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 GLY A -25 REMARK 465 LYS A -24 REMARK 465 PRO A -23 REMARK 465 ILE A -22 REMARK 465 PRO A -21 REMARK 465 ASN A -20 REMARK 465 PRO A -19 REMARK 465 LEU A -18 REMARK 465 LEU A -17 REMARK 465 GLY A -16 REMARK 465 LEU A -15 REMARK 465 ASP A -14 REMARK 465 SER A -13 REMARK 465 THR A -12 REMARK 465 GLU A -11 REMARK 465 ASN A -10 REMARK 465 LEU A -9 REMARK 465 TYR A -8 REMARK 465 PHE A -7 REMARK 465 GLN A -6 REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 LYS A 203 REMARK 465 MET B -32 REMARK 465 HIS B -31 REMARK 465 HIS B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 GLY B -25 REMARK 465 LYS B -24 REMARK 465 PRO B -23 REMARK 465 ILE B -22 REMARK 465 PRO B -21 REMARK 465 ASN B -20 REMARK 465 PRO B -19 REMARK 465 LEU B -18 REMARK 465 LEU B -17 REMARK 465 GLY B -16 REMARK 465 LEU B -15 REMARK 465 ASP B -14 REMARK 465 SER B -13 REMARK 465 THR B -12 REMARK 465 GLU B -11 REMARK 465 ASN B -10 REMARK 465 LEU B -9 REMARK 465 TYR B -8 REMARK 465 PHE B -7 REMARK 465 GLN B -6 REMARK 465 GLY B -5 REMARK 465 ILE B -4 REMARK 465 LYS B 203 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2242 O HOH A 2245 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 120 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 LEU B 7 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 ASP B 107 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17 -33.81 -142.73 REMARK 500 ASN A 143 -125.38 54.69 REMARK 500 TYR A 169 -5.47 -140.53 REMARK 500 GLN A 174 -128.66 48.81 REMARK 500 ALA B 17 -36.93 -135.12 REMARK 500 ASN B 143 -127.56 57.77 REMARK 500 TYR B 169 -4.16 -140.62 REMARK 500 GLN B 174 -130.81 49.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2019 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A2033 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A2123 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B2034 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B2075 DISTANCE = 6.68 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 76 NE2 88.5 REMARK 620 3 ASP A 163 OD2 85.0 112.1 REMARK 620 4 HIS A 167 NE2 93.1 134.1 113.7 REMARK 620 5 HOH A2186 O 172.5 92.9 87.7 91.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 76 NE2 86.7 REMARK 620 3 ASP B 163 OD2 84.5 110.5 REMARK 620 4 HIS B 167 NE2 95.1 133.4 116.0 REMARK 620 5 HOH B2164 O 172.8 93.9 88.6 89.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 301 DBREF 5A9G A -32 203 PDB 5A9G 5A9G -32 203 DBREF 5A9G B -32 203 PDB 5A9G 5A9G -32 203 SEQRES 1 A 236 MET HIS HIS HIS HIS HIS HIS GLY LYS PRO ILE PRO ASN SEQRES 2 A 236 PRO LEU LEU GLY LEU ASP SER THR GLU ASN LEU TYR PHE SEQRES 3 A 236 GLN GLY ILE ASP PRO PHE THR GLN PHE LYS GLN THR PRO SEQRES 4 A 236 LEU PRO TYR ALA TYR ASP ALA LEU GLU GLY ALA ILE ASP SEQRES 5 A 236 ALA LYS THR MET GLU ILE HIS TYR SER LYS HIS ALA ALA SEQRES 6 A 236 GLY TYR THR ALA ASN LEU ASN LYS ALA ILE ALA GLY THR SEQRES 7 A 236 PRO ALA GLU LYS GLU SER ILE GLU ASN ILE LEU ALA LYS SEQRES 8 A 236 VAL SER GLN TYR SER ASP ALA VAL ARG ASN ASN ALA GLY SEQRES 9 A 236 GLY HIS TYR ASN HIS GLU LEU PHE TRP SER ILE LEU THR SEQRES 10 A 236 PRO ASN LYS GLY THR LYS PRO SER ALA ALA LEU GLN LYS SEQRES 11 A 236 ALA ILE ASP GLU THR PHE GLY SER LEU ASP ALA LEU LYS SEQRES 12 A 236 GLU LYS ILE ASN ALA ALA GLY ALA ALA ARG PHE GLY SER SEQRES 13 A 236 GLY TRP ALA TRP LEU ILE VAL ASP ASN GLY GLY LYS LEU SEQRES 14 A 236 GLN VAL THR SER THR PRO ASN GLN ASP ASN PRO LEU MET SEQRES 15 A 236 ASP PHE THR LYS GLU LYS GLY THR PRO ILE LEU GLY ILE SEQRES 16 A 236 ASP VAL TRP GLU HIS ALA TYR TYR LEU ARG TYR GLN ASN SEQRES 17 A 236 LYS ARG ALA ASP TYR LEU THR THR ILE TRP ASP VAL ILE SEQRES 18 A 236 ASN TRP GLU GLU VAL SER ALA ARG TYR GLU LYS ALA LEU SEQRES 19 A 236 LYS LYS SEQRES 1 B 236 MET HIS HIS HIS HIS HIS HIS GLY LYS PRO ILE PRO ASN SEQRES 2 B 236 PRO LEU LEU GLY LEU ASP SER THR GLU ASN LEU TYR PHE SEQRES 3 B 236 GLN GLY ILE ASP PRO PHE THR GLN PHE LYS GLN THR PRO SEQRES 4 B 236 LEU PRO TYR ALA TYR ASP ALA LEU GLU GLY ALA ILE ASP SEQRES 5 B 236 ALA LYS THR MET GLU ILE HIS TYR SER LYS HIS ALA ALA SEQRES 6 B 236 GLY TYR THR ALA ASN LEU ASN LYS ALA ILE ALA GLY THR SEQRES 7 B 236 PRO ALA GLU LYS GLU SER ILE GLU ASN ILE LEU ALA LYS SEQRES 8 B 236 VAL SER GLN TYR SER ASP ALA VAL ARG ASN ASN ALA GLY SEQRES 9 B 236 GLY HIS TYR ASN HIS GLU LEU PHE TRP SER ILE LEU THR SEQRES 10 B 236 PRO ASN LYS GLY THR LYS PRO SER ALA ALA LEU GLN LYS SEQRES 11 B 236 ALA ILE ASP GLU THR PHE GLY SER LEU ASP ALA LEU LYS SEQRES 12 B 236 GLU LYS ILE ASN ALA ALA GLY ALA ALA ARG PHE GLY SER SEQRES 13 B 236 GLY TRP ALA TRP LEU ILE VAL ASP ASN GLY GLY LYS LEU SEQRES 14 B 236 GLN VAL THR SER THR PRO ASN GLN ASP ASN PRO LEU MET SEQRES 15 B 236 ASP PHE THR LYS GLU LYS GLY THR PRO ILE LEU GLY ILE SEQRES 16 B 236 ASP VAL TRP GLU HIS ALA TYR TYR LEU ARG TYR GLN ASN SEQRES 17 B 236 LYS ARG ALA ASP TYR LEU THR THR ILE TRP ASP VAL ILE SEQRES 18 B 236 ASN TRP GLU GLU VAL SER ALA ARG TYR GLU LYS ALA LEU SEQRES 19 B 236 LYS LYS HET MN A 301 1 HET MN B 301 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *601(H2 O) HELIX 1 1 ASP A 19 LYS A 29 1 11 HELIX 2 2 LYS A 29 ALA A 43 1 15 HELIX 3 3 SER A 51 LYS A 58 1 8 HELIX 4 4 VAL A 59 TYR A 62 5 4 HELIX 5 5 SER A 63 ILE A 82 1 20 HELIX 6 6 SER A 92 GLY A 104 1 13 HELIX 7 7 SER A 105 ARG A 120 1 16 HELIX 8 8 TRP A 165 ALA A 168 5 4 HELIX 9 9 TYR A 169 GLN A 174 1 6 HELIX 10 10 LYS A 176 TRP A 185 1 10 HELIX 11 11 ASN A 189 LYS A 202 1 14 HELIX 12 12 ASP B 19 LYS B 29 1 11 HELIX 13 13 LYS B 29 ALA B 43 1 15 HELIX 14 14 SER B 51 LYS B 58 1 8 HELIX 15 15 VAL B 59 TYR B 62 5 4 HELIX 16 16 SER B 63 ILE B 82 1 20 HELIX 17 17 SER B 92 GLY B 104 1 13 HELIX 18 18 SER B 105 ARG B 120 1 16 HELIX 19 19 TRP B 165 ALA B 168 5 4 HELIX 20 20 TYR B 169 GLN B 174 1 6 HELIX 21 21 LYS B 176 TRP B 185 1 10 HELIX 22 22 ASN B 189 LYS B 202 1 14 SHEET 1 AA 3 LEU A 136 PRO A 142 0 SHEET 2 AA 3 GLY A 124 VAL A 130 -1 O TRP A 125 N THR A 141 SHEET 3 AA 3 THR A 157 ASP A 163 -1 O THR A 157 N VAL A 130 SHEET 1 BA 3 LEU B 136 PRO B 142 0 SHEET 2 BA 3 GLY B 124 ASP B 131 -1 O TRP B 125 N THR B 141 SHEET 3 BA 3 GLY B 156 ASP B 163 -1 O THR B 157 N VAL B 130 LINK NE2 HIS A 26 MN MN A 301 1555 1555 2.18 LINK NE2 HIS A 76 MN MN A 301 1555 1555 2.22 LINK OD2 ASP A 163 MN MN A 301 1555 1555 2.00 LINK NE2 HIS A 167 MN MN A 301 1555 1555 2.16 LINK MN MN A 301 O HOH A2186 1555 1555 2.08 LINK NE2 HIS B 26 MN MN B 301 1555 1555 2.20 LINK NE2 HIS B 76 MN MN B 301 1555 1555 2.22 LINK OD2 ASP B 163 MN MN B 301 1555 1555 1.96 LINK NE2 HIS B 167 MN MN B 301 1555 1555 2.21 LINK MN MN B 301 O HOH B2164 1555 1555 2.13 SITE 1 AC1 5 HIS A 26 HIS A 76 ASP A 163 HIS A 167 SITE 2 AC1 5 HOH A2186 SITE 1 AC2 5 HIS B 26 HIS B 76 ASP B 163 HIS B 167 SITE 2 AC2 5 HOH B2164 CRYST1 46.700 58.940 75.710 90.00 90.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021413 0.000000 0.000067 0.00000 SCALE2 0.000000 0.016966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013208 0.00000