HEADER VIRAL PROTEIN 21-JUL-15 5A9P TITLE CRYSTAL STRUCTURE OF OPEROPHTERA BRUMATA CPV18 POLYHEDRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OPEROPHTERA BRUMATA CYPOVIRUS 18; SOURCE 3 ORGANISM_TAXID: 352244; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS VIRAL PROTEIN, INSECT VIRUS OCCLUSION BODY, MICROCRYSTAL EXPDTA X-RAY DIFFRACTION AUTHOR X.JI,D.AXFORD,R.OWEN,G.EVANS,H.M.GINN,G.SUTTON,D.I.STUART REVDAT 4 10-JAN-24 5A9P 1 REMARK REVDAT 3 23-OCT-19 5A9P 1 ATOM REVDAT 2 14-OCT-15 5A9P 1 JRNL REVDAT 1 02-SEP-15 5A9P 0 JRNL AUTH X.JI,D.AXFORD,R.OWEN,G.EVANS,H.M.GINN,G.SUTTON,D.I.STUART JRNL TITL POLYHEDRA STRUCTURES AND THE EVOLUTION OF THE INSECT JRNL TITL 2 VIRUSES. JRNL REF J.STRUCT.BIOL. V. 192 88 2015 JRNL REFN ISSN 1047-8477 JRNL PMID 26291392 JRNL DOI 10.1016/J.JSB.2015.08.009 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.7575 - 3.2832 1.00 2723 151 0.1093 0.1148 REMARK 3 2 3.2832 - 2.6059 1.00 2647 151 0.1040 0.1256 REMARK 3 3 2.6059 - 2.2765 1.00 2635 137 0.1075 0.1208 REMARK 3 4 2.2765 - 2.0683 1.00 2608 146 0.1065 0.1287 REMARK 3 5 2.0683 - 1.9201 1.00 2611 151 0.1176 0.1332 REMARK 3 6 1.9201 - 1.8068 1.00 2617 136 0.1411 0.1747 REMARK 3 7 1.8068 - 1.7163 1.00 2590 143 0.1528 0.1877 REMARK 3 8 1.7163 - 1.6416 1.00 2634 123 0.1689 0.1944 REMARK 3 9 1.6416 - 1.5784 1.00 2612 122 0.1866 0.2346 REMARK 3 10 1.5784 - 1.5240 1.00 2588 130 0.2066 0.2166 REMARK 3 11 1.5240 - 1.4763 1.00 2612 148 0.2282 0.2388 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2124 REMARK 3 ANGLE : 1.146 2901 REMARK 3 CHIRALITY : 0.067 291 REMARK 3 PLANARITY : 0.005 373 REMARK 3 DIHEDRAL : 18.395 777 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 34.1141 21.1181 8.7019 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: 0.0477 REMARK 3 T33: 0.0497 T12: -0.0009 REMARK 3 T13: 0.0015 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: 0.0027 REMARK 3 L33: 0.0037 L12: 0.0003 REMARK 3 L13: 0.0025 L23: 0.0018 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.0018 S13: -0.0001 REMARK 3 S21: 0.0002 S22: -0.0041 S23: -0.0018 REMARK 3 S31: -0.0000 S32: 0.0017 S33: -0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 21 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30415 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 72.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.32000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OH6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.38500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.38500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.38500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.38500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.38500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.38500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.38500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.38500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.38500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.38500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.38500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.38500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.38500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.38500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.38500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.38500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.38500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.38500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.38500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.38500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.38500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.38500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.38500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.38500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.38500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.38500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.38500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.38500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.38500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.38500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.38500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.38500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.38500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.38500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.38500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.38500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2011 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2029 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2122 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2181 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 N CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HN1 GTP A 1250 O HOH A 2248 1.50 REMARK 500 HZ2 LYS A 149 O HOH A 2171 1.53 REMARK 500 O HOH A 2241 O HOH A 2250 1.89 REMARK 500 O HOH A 2184 O HOH A 2251 2.02 REMARK 500 O HOH A 2250 O HOH A 2251 2.03 REMARK 500 O2B GTP A 1250 O HOH A 2250 2.07 REMARK 500 NZ LYS A 149 O HOH A 2171 2.10 REMARK 500 O HOH A 2003 O HOH A 2005 2.11 REMARK 500 O2G GTP A 1250 O HOH A 2250 2.16 REMARK 500 O HOH A 2038 O HOH A 2097 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 96 O HOH A 2049 12555 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 -50.08 73.26 REMARK 500 GLU A 96 58.57 -141.18 REMARK 500 SER A 131 39.13 71.63 REMARK 500 ASP A 135 -55.65 72.26 REMARK 500 TYR A 224 -70.21 -124.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2035 DISTANCE = 5.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 1250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A8S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 1 REMARK 900 RELATED ID: 5A8T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 2 REMARK 900 RELATED ID: 5A8U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA REMARK 900 RELATED ID: 5A8V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA WITH SEMET REMARK 900 SUBSTITUTION REMARK 900 RELATED ID: 5A96 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LYMANTRIA DISPAR CPV14 POLYHEDRA REMARK 900 RELATED ID: 5A98 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRICHOPLUSIA NI CPV15 POLYHEDRA REMARK 900 RELATED ID: 5A99 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OPEROPHTERA BRUMATA CPV19 POLYHEDRA REMARK 900 RELATED ID: 5A9A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SIMULIUM UBIQUITUM CPV20 POLYHEDRA REMARK 900 RELATED ID: 5A9B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOMBYX MORI CPV1 POLYHEDRA BASE DOMAIN DELETED REMARK 900 MUTANT REMARK 900 RELATED ID: 5A9C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA BASE DOMAIN REMARK 900 DELETED MUTANT DBREF 5A9P A 1 248 UNP Q30C70 Q30C70_9REOV 1 248 SEQRES 1 A 248 MET ALA ASP VAL ALA GLY THR SER ASN ARG ASP PHE ARG SEQRES 2 A 248 GLY ARG GLU GLN ARG LEU TYR ASN SER GLU GLN TYR ASN SEQRES 3 A 248 TYR ASN ASN SER LEU ASN GLY GLU VAL SER LEU TRP VAL SEQRES 4 A 248 TYR ALA TYR TYR SER ASP GLY SER VAL LEU VAL ARG ASN SEQRES 5 A 248 CYS ASN SER GLN TYR LYS VAL GLY ILE SER GLU CYS PHE SEQRES 6 A 248 LYS SER LEU LYS GLU VAL ARG VAL GLY GLN ASN ASN ASP SEQRES 7 A 248 PRO TYR ASP GLU GLN GLU VAL ASN ASN GLY VAL TYR TYR SEQRES 8 A 248 PRO ASN GLY GLY GLU PRO THR LYS PHE HIS SER ASN ALA SEQRES 9 A 248 LYS PRO ARG ALA ILE GLN ILE ILE PHE SER PRO SER VAL SEQRES 10 A 248 ASN VAL HIS THR ILE LYS MET ALA LYS GLY ASN SER VAL SEQRES 11 A 248 SER ILE PRO LYS ASP TYR LEU GLN ARG SER HIS PRO TRP SEQRES 12 A 248 GLU ALA THR GLY VAL LYS TYR ARG LYS ILE HIS VAL ASP SEQRES 13 A 248 GLY GLU ILE VAL GLY TYR SER HIS TYR PHE GLU LEU PRO SEQRES 14 A 248 HIS GLU TYR ASN SER ILE SER LEU SER VAL SER GLY VAL SEQRES 15 A 248 HIS LYS ASN PRO SER SER TYR ASN VAL ALA ALA PRO HIS SEQRES 16 A 248 ASN ILE MET ASP VAL PHE GLN SER CYS ASP LEU ALA LEU SEQRES 17 A 248 LYS PHE SER ASN ARG TYR TRP CYS GLU LEU GLU LEU ILE SEQRES 18 A 248 ASN HIS TYR ILE SER ALA TYR ALA TYR PRO TYR LEU ASP SEQRES 19 A 248 ILE ASN ASN HIS LYS TYR GLY VAL PRO LEU ASN GLY ARG SEQRES 20 A 248 GLN HET ATP A1249 43 HET GTP A1250 42 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 GTP C10 H16 N5 O14 P3 FORMUL 4 HOH *253(H2 O) HELIX 1 1 ASP A 11 SER A 30 1 20 HELIX 2 2 PHE A 65 LYS A 69 5 5 HELIX 3 3 ASP A 78 TYR A 91 1 14 HELIX 4 4 ASN A 118 ILE A 122 5 5 HELIX 5 5 TYR A 136 SER A 140 5 5 HELIX 6 6 THR A 146 TYR A 150 5 5 HELIX 7 7 ASN A 196 ALA A 207 1 12 HELIX 8 8 CYS A 216 TYR A 224 1 9 SHEET 1 AA 6 ARG A 151 VAL A 155 0 SHEET 2 AA 6 GLU A 158 GLU A 167 -1 O GLU A 158 N VAL A 155 SHEET 3 AA 6 ALA A 108 PHE A 113 -1 O ILE A 109 N PHE A 166 SHEET 4 AA 6 GLU A 34 TYR A 42 -1 O TRP A 38 N ILE A 112 SHEET 5 AA 6 VAL A 48 GLN A 56 -1 O LEU A 49 N ALA A 41 SHEET 6 AA 6 LEU A 208 TYR A 214 -1 O LEU A 208 N ASN A 54 SHEET 1 AB 3 LYS A 58 GLU A 63 0 SHEET 2 AB 3 SER A 176 VAL A 182 -1 O LEU A 177 N GLU A 63 SHEET 3 AB 3 LYS A 123 GLY A 127 -1 O LYS A 123 N SER A 180 SHEET 1 AC 2 TYR A 232 LEU A 233 0 SHEET 2 AC 2 LYS A 239 TYR A 240 -1 O TYR A 240 N TYR A 232 SITE 1 AC1 18 TYR A 25 LYS A 152 HIS A 154 ASP A 156 SITE 2 AC1 18 GLY A 157 ILE A 159 LYS A 184 GTP A1250 SITE 3 AC1 18 HOH A2031 HOH A2134 HOH A2178 HOH A2179 SITE 4 AC1 18 HOH A2180 HOH A2182 HOH A2186 HOH A2244 SITE 5 AC1 18 HOH A2245 HOH A2246 SITE 1 AC2 19 ASN A 9 ARG A 10 ARG A 18 HIS A 170 SITE 2 AC2 19 TYR A 172 ASN A 173 LYS A 184 ATP A1249 SITE 3 AC2 19 HOH A2014 HOH A2025 HOH A2026 HOH A2182 SITE 4 AC2 19 HOH A2241 HOH A2248 HOH A2249 HOH A2250 SITE 5 AC2 19 HOH A2251 HOH A2252 HOH A2253 CRYST1 102.770 102.770 102.770 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009730 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009730 0.00000