HEADER CALCIUM-BINDING PROTEIN 28-JUL-15 5AAQ TITLE TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI- TITLE 2 BACTERIAL AUTOPHAGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-BINDING AND COILED-COIL DOMAIN-CONTAINING PROTEIN COMPND 3 2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 388-446; COMPND 6 SYNONYM: ANTIGEN NUCLEAR DOT 52 KDA PROTEIN, NUCLEAR DOMAIN 10 COMPND 7 PROTEIN NDP52, NUCLEAR DOMAIN 10 PROTEIN 52, NDP52 ZINC FINGER; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: HLTV KEYWDS CALCIUM-BINDING PROTEIN, TBK1, NDP52, ZINC-FINGER EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.L.THURSTON,M.D.ALLEN,B.RAVENHILL,M.KARPIYEVITCH,S.BLOOR,A.KAUL, AUTHOR 2 S.MATTHEWS,D.KOMANDER,D.HOLDEN,M.BYCROFT,F.RANDOW REVDAT 4 15-MAY-24 5AAQ 1 REMARK LINK REVDAT 3 23-OCT-19 5AAQ 1 REMARK ATOM REVDAT 2 31-AUG-16 5AAQ 1 JRNL REVDAT 1 13-JUL-16 5AAQ 0 JRNL AUTH T.L.THURSTON,K.B.BOYLE,M.ALLEN,B.J.RAVENHILL,M.KARPIYEVICH, JRNL AUTH 2 S.BLOOR,A.KAUL,J.NOAD,A.FOEGLEIN,S.A.MATTHEWS,D.KOMANDER, JRNL AUTH 3 M.BYCROFT,F.RANDOW JRNL TITL RECRUITMENT OF TBK1 TO CYTOSOL-INVADING SALMONELLA INDUCES JRNL TITL 2 WIPI2-DEPENDENT ANTIBACTERIAL AUTOPHAGY. JRNL REF EMBO J. V. 35 1779 2016 JRNL REFN ISSN 0261-4189 JRNL PMID 27370208 JRNL DOI 10.15252/EMBJ.201694491 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 5AAQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064530. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; DQF-COSY; HSQC; REMARK 210 HNCACB; CBCACONH; HNCO; HNCACO; REMARK 210 HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, CNS REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 387 REMARK 465 SER A 388 REMARK 465 PRO A 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 392 151.75 61.51 REMARK 500 1 SER A 393 160.40 60.80 REMARK 500 1 CYS A 406 -179.63 179.95 REMARK 500 1 THR A 409 114.01 64.21 REMARK 500 1 GLN A 414 46.35 -94.12 REMARK 500 2 SER A 393 105.86 57.93 REMARK 500 2 LYS A 395 -78.07 -150.95 REMARK 500 2 CYS A 400 -47.42 -165.74 REMARK 500 2 ASP A 404 -78.10 -78.41 REMARK 500 2 ILE A 405 -43.60 -166.88 REMARK 500 2 THR A 409 123.48 63.01 REMARK 500 3 SER A 393 -46.04 -153.55 REMARK 500 3 ILE A 399 97.16 64.48 REMARK 500 3 ASP A 404 119.49 62.40 REMARK 500 3 ILE A 405 31.41 -98.31 REMARK 500 3 THR A 409 105.52 61.82 REMARK 500 3 MET A 415 -44.94 -159.35 REMARK 500 3 GLN A 416 73.82 -170.97 REMARK 500 4 LEU A 392 -46.55 -155.16 REMARK 500 4 SER A 393 121.77 -178.00 REMARK 500 4 ILE A 394 54.47 -90.33 REMARK 500 4 ILE A 399 -40.58 -175.97 REMARK 500 4 CYS A 400 -45.25 -158.06 REMARK 500 4 ASP A 404 -176.61 62.73 REMARK 500 4 THR A 409 170.15 57.65 REMARK 500 4 MET A 415 146.40 -175.41 REMARK 500 5 THR A 409 115.06 61.81 REMARK 500 6 ILE A 399 69.80 -115.14 REMARK 500 6 ILE A 405 29.90 -140.90 REMARK 500 6 THR A 409 140.42 62.91 REMARK 500 6 GLN A 416 88.81 59.94 REMARK 500 7 SER A 393 129.56 -172.73 REMARK 500 7 CYS A 400 96.81 -162.98 REMARK 500 7 ASP A 404 -179.96 57.53 REMARK 500 7 CYS A 406 -67.90 -171.89 REMARK 500 7 THR A 409 142.78 62.24 REMARK 500 7 MET A 415 56.41 -164.22 REMARK 500 8 PRO A 391 90.64 -52.77 REMARK 500 8 SER A 393 -174.43 -60.20 REMARK 500 8 ILE A 394 32.26 -99.23 REMARK 500 8 CYS A 406 -40.81 -175.53 REMARK 500 8 THR A 409 121.83 63.07 REMARK 500 9 PRO A 391 97.32 -52.91 REMARK 500 9 ILE A 399 -52.16 -124.13 REMARK 500 9 THR A 409 128.15 63.65 REMARK 500 10 LYS A 395 40.59 -96.06 REMARK 500 10 CYS A 400 39.81 -164.55 REMARK 500 10 ILE A 405 -40.94 -174.52 REMARK 500 10 THR A 409 96.06 61.28 REMARK 500 10 GLN A 414 170.05 -59.83 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 447 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 422 SG REMARK 620 2 CYS A 425 SG 121.9 REMARK 620 3 HIS A 440 NE2 114.8 118.6 REMARK 620 4 HIS A 444 NE2 100.4 98.0 93.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 447 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AAS RELATED DB: PDB REMARK 900 THE SELECTIVE AUTOPHAGY RECEPTOR TAX1BP1 IS REQUIRED FOR AUTOPHAGY- REMARK 900 DEPENDENT CAPTURE OF CYTOSOLIC SALMONELLA TYPHIMURIUM REMARK 900 RELATED ID: 5AAY RELATED DB: PDB REMARK 900 TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI- REMARK 900 BACTERIAL AUTOPHAGY REMARK 900 RELATED ID: 5AAZ RELATED DB: PDB REMARK 900 TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI- REMARK 900 BACTERIAL AUTOPHAGY REMARK 900 RELATED ID: 25734 RELATED DB: BMRB DBREF 5AAQ A 388 446 UNP Q13137 CACO2_HUMAN 388 446 SEQADV 5AAQ GLY A 387 UNP Q13137 EXPRESSION TAG SEQRES 1 A 60 GLY SER PRO SER PRO LEU SER ILE LYS LYS CYS PRO ILE SEQRES 2 A 60 CYS LYS ALA ASP ASP ILE CYS ASP HIS THR LEU GLU GLN SEQRES 3 A 60 GLN GLN MET GLN PRO LEU CYS PHE ASN CYS PRO ILE CYS SEQRES 4 A 60 ASP LYS ILE PHE PRO ALA THR GLU LYS GLN ILE PHE GLU SEQRES 5 A 60 ASP HIS VAL PHE CYS HIS SER LEU HET ZN A 447 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 THR A 409 GLN A 414 1 6 HELIX 2 2 GLU A 433 LEU A 446 1 14 SHEET 1 AA 2 CYS A 419 CYS A 422 0 SHEET 2 AA 2 LYS A 427 PRO A 430 -1 O LYS A 427 N CYS A 422 LINK SG CYS A 422 ZN ZN A 447 1555 1555 2.35 LINK SG CYS A 425 ZN ZN A 447 1555 1555 2.24 LINK NE2 HIS A 440 ZN ZN A 447 1555 1555 2.00 LINK NE2 HIS A 444 ZN ZN A 447 1555 1555 2.05 SITE 1 AC1 4 CYS A 422 CYS A 425 HIS A 440 HIS A 444 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1