HEADER PROTEIN BINDING 31-JUL-15 5AAY TITLE TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI- TITLE 2 BACTERIAL AUTOPHAGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: NF-KAPPA-B ESSENTIAL MODULATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 392-419; COMPND 5 SYNONYM: NEMO, FIP-3, IKB KINASE-ASSOCIATED PROTEIN 1, IKKAP1, COMPND 6 INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE SUBUNIT GAMMA, I-KAPPA-B COMPND 7 KINASE SUBUNIT GAMMA, IKK-GAMMA, IKKG, IKB KINASE SUBUNIT GAMMA, NF- COMPND 8 KAPPA-B ESSENTIAL MODIFIER; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: HLTV PLASMID KEYWDS PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.L.THURSTON,M.D.ALLEN,B.RAVENHILL,M.KARPIYEVITCH,S.BLOOR,A.KAUL, AUTHOR 2 S.MATTHEWS,D.KOMANDER,D.HOLDEN,M.BYCROFT,F.RANDOW REVDAT 3 23-OCT-19 5AAY 1 REMARK ATOM REVDAT 2 31-AUG-16 5AAY 1 JRNL REVDAT 1 13-JUL-16 5AAY 0 JRNL AUTH T.L.THURSTON,K.B.BOYLE,M.ALLEN,B.J.RAVENHILL,M.KARPIYEVICH, JRNL AUTH 2 S.BLOOR,A.KAUL,J.NOAD,A.FOEGLEIN,S.A.MATTHEWS,D.KOMANDER, JRNL AUTH 3 M.BYCROFT,F.RANDOW JRNL TITL RECRUITMENT OF TBK1 TO CYTOSOL-INVADING SALMONELLA INDUCES JRNL TITL 2 WIPI2-DEPENDENT ANTIBACTERIAL AUTOPHAGY. JRNL REF EMBO J. V. 35 1779 2016 JRNL REFN ISSN 0261-4189 JRNL PMID 27370208 JRNL DOI 10.15252/EMBJ.201694491 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 5AAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064555. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; DQF-COSY; HSQC; REMARK 210 HNCACB; CBCACONH; HNCO; HNCACO; REMARK 210 HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, CNS REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 390 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 395 44.83 -95.21 REMARK 500 1 GLN A 401 19.65 59.43 REMARK 500 2 PRO A 392 104.47 -50.97 REMARK 500 2 PHE A 395 42.78 -94.35 REMARK 500 3 PRO A 392 150.13 -49.40 REMARK 500 3 PHE A 395 42.17 -95.58 REMARK 500 4 PHE A 395 40.78 -94.59 REMARK 500 5 PHE A 395 45.11 -95.02 REMARK 500 6 PHE A 395 44.44 -98.57 REMARK 500 8 PHE A 395 46.60 -94.56 REMARK 500 9 PHE A 395 42.18 -94.52 REMARK 500 10 PHE A 395 46.60 -94.56 REMARK 500 11 PHE A 395 39.42 -93.82 REMARK 500 12 PHE A 395 47.73 -91.90 REMARK 500 13 PHE A 395 43.00 -94.45 REMARK 500 14 PRO A 393 -165.79 -55.75 REMARK 500 14 PHE A 395 44.82 -97.78 REMARK 500 16 PHE A 395 38.96 -95.08 REMARK 500 17 PHE A 395 41.42 -104.28 REMARK 500 18 PRO A 392 104.89 -48.54 REMARK 500 18 PHE A 395 41.85 -93.97 REMARK 500 18 GLN A 401 70.82 62.17 REMARK 500 19 PHE A 395 36.12 -95.43 REMARK 500 20 ASP A 394 -100.79 -96.33 REMARK 500 20 PHE A 395 27.58 46.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1420 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 397 SG REMARK 620 2 CYS A 400 SG 115.1 REMARK 620 3 HIS A 413 NE2 112.6 95.7 REMARK 620 4 CYS A 417 SG 116.4 99.3 115.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1420 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AAQ RELATED DB: PDB REMARK 900 TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI- REMARK 900 BACTERIAL AUTOPHAGY REMARK 900 RELATED ID: 5AAS RELATED DB: PDB REMARK 900 THE SELECTIVE AUTOPHAGY RECEPTOR TAX1BP1 IS REQUIRED FOR AUTOPHAGY- REMARK 900 DEPENDENT CAPTURE OF CYTOSOLIC SALMONELLA TYPHIMURIUM REMARK 900 RELATED ID: 5AAZ RELATED DB: PDB REMARK 900 TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI- REMARK 900 BACTERIAL AUTOPHAGY REMARK 900 RELATED ID: 25736 RELATED DB: BMRB DBREF 5AAY A 392 419 UNP Q9Y6K9 NEMO_HUMAN 392 419 SEQADV 5AAY GLY A 390 UNP Q9Y6K9 EXPRESSION TAG SEQADV 5AAY SER A 391 UNP Q9Y6K9 EXPRESSION TAG SEQRES 1 A 30 GLY SER PRO PRO ASP PHE CYS CYS PRO LYS CYS GLN TYR SEQRES 2 A 30 GLN ALA PRO ASP MET ASP THR LEU GLN ILE HIS VAL MET SEQRES 3 A 30 GLU CYS ILE GLU HET ZN A1420 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 MET A 407 ILE A 418 1 12 LINK ZN ZN A1420 SG CYS A 397 1555 1555 2.35 LINK ZN ZN A1420 SG CYS A 400 1555 1555 2.35 LINK ZN ZN A1420 NE2 HIS A 413 1555 1555 2.04 LINK ZN ZN A1420 SG CYS A 417 1555 1555 2.30 SITE 1 AC1 4 CYS A 397 CYS A 400 HIS A 413 CYS A 417 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1