HEADER HYDROLASE 31-JUL-15 5AB2 TITLE CRYSTAL STRUCTURE OF AMINOPEPTIDASE ERAP2 WITH LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LEUKOCYTE-DERIVED ARGININE AMINOPEPTIDASE, L-RAP; COMPND 5 EC: 3.4.11.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GPI; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS AMINOPEPTIDASE, ERAP2, ZINC ION BINDING, ENDOPLASMIC RETICULUM, KEYWDS 2 HYDROLASE, METALLOPROTEASE, L-RAP, ANTIGEN PRESENTATION EXPDTA X-RAY DIFFRACTION AUTHOR A.MPAKALI,P.GIASTAS,E.SARIDAKIS,I.M.MAVRIDIS,E.STRATIKOS REVDAT 5 10-JAN-24 5AB2 1 HETSYN LINK REVDAT 4 29-JUL-20 5AB2 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 03-APR-19 5AB2 1 SOURCE LINK REVDAT 2 11-NOV-15 5AB2 1 JRNL REVDAT 1 30-SEP-15 5AB2 0 JRNL AUTH A.MPAKALI,P.GIASTAS,N.MATHIOUDAKIS,I.M.MAVRIDIS,E.SARIDAKIS, JRNL AUTH 2 E.STRATIKOS JRNL TITL STRUCTURAL BASIS FOR ANTIGENIC PEPTIDE RECOGNITION AND JRNL TITL 2 PROCESSING BY ENDOPLASMIC RETICULUM (ER) AMINOPEPTIDASE 2. JRNL REF J.BIOL.CHEM. V. 290 26021 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26381406 JRNL DOI 10.1074/JBC.M115.685909 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.260 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 68272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0146 - 8.4646 0.99 4268 231 0.1829 0.2042 REMARK 3 2 8.4646 - 6.7241 1.00 4253 226 0.1816 0.2418 REMARK 3 3 6.7241 - 5.8758 1.00 4293 226 0.2036 0.2680 REMARK 3 4 5.8758 - 5.3392 1.00 4236 222 0.1959 0.2823 REMARK 3 5 5.3392 - 4.9569 0.99 4302 224 0.1840 0.2646 REMARK 3 6 4.9569 - 4.6649 1.00 4259 221 0.1747 0.2521 REMARK 3 7 4.6649 - 4.4315 0.99 4253 219 0.1823 0.2476 REMARK 3 8 4.4315 - 4.2387 0.99 4286 230 0.1873 0.2621 REMARK 3 9 4.2387 - 4.0756 0.99 4299 225 0.1925 0.2304 REMARK 3 10 4.0756 - 3.9350 0.99 4226 217 0.2040 0.2605 REMARK 3 11 3.9350 - 3.8120 0.99 4216 225 0.2204 0.3214 REMARK 3 12 3.8120 - 3.7031 0.92 4019 211 0.2832 0.3315 REMARK 3 13 3.7031 - 3.6056 0.92 3861 209 0.3911 0.4755 REMARK 3 14 3.6056 - 3.5177 0.97 4233 222 0.2600 0.2931 REMARK 3 15 3.5177 - 3.4377 1.00 4244 226 0.2378 0.3143 REMARK 3 16 3.4377 - 3.3646 1.00 4321 227 0.2411 0.3082 REMARK 3 17 3.3646 - 3.2973 1.00 4183 220 0.2397 0.3054 REMARK 3 18 3.2973 - 3.2351 1.00 4353 228 0.2382 0.3355 REMARK 3 19 3.2351 - 3.1773 1.00 4281 225 0.2514 0.3148 REMARK 3 20 3.1773 - 3.1235 0.99 4244 221 0.2592 0.3369 REMARK 3 21 3.1235 - 3.0731 1.00 4323 226 0.2787 0.3413 REMARK 3 22 3.0731 - 3.0258 1.00 4221 221 0.2606 0.3479 REMARK 3 23 3.0258 - 2.9813 0.99 4305 226 0.2590 0.2858 REMARK 3 24 2.9813 - 2.9394 1.00 4220 218 0.2755 0.3328 REMARK 3 25 2.9394 - 2.8996 0.99 4293 228 0.2770 0.3291 REMARK 3 26 2.8996 - 2.8620 1.00 4240 242 0.2814 0.3322 REMARK 3 27 2.8620 - 2.8262 1.00 4260 207 0.2852 0.3612 REMARK 3 28 2.8262 - 2.7922 0.99 4271 218 0.2957 0.3474 REMARK 3 29 2.7922 - 2.7597 0.99 4289 211 0.3122 0.3818 REMARK 3 30 2.7597 - 2.7287 0.95 4112 238 0.3116 0.3693 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 15445 REMARK 3 ANGLE : 1.423 20968 REMARK 3 CHIRALITY : 0.055 2383 REMARK 3 PLANARITY : 0.006 2599 REMARK 3 DIHEDRAL : 16.865 5682 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68594 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4E36 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7 %(W/V) PEG MW 8000, 20 %(V/V) REMARK 280 ETHYLENE GLYCOL, 59 MM MES AND 41 MM IMIDAZOLE AT PH 6.3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 67.73250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -0.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F, G, H, I, J, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, L, M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 MET A 7 REMARK 465 VAL A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 HIS A 11 REMARK 465 ARG A 12 REMARK 465 LYS A 13 REMARK 465 PRO A 14 REMARK 465 MET A 15 REMARK 465 PHE A 16 REMARK 465 ASN A 17 REMARK 465 ILE A 18 REMARK 465 HIS A 19 REMARK 465 ARG A 20 REMARK 465 GLY A 21 REMARK 465 PHE A 22 REMARK 465 TYR A 23 REMARK 465 CYS A 24 REMARK 465 LEU A 25 REMARK 465 THR A 26 REMARK 465 ALA A 27 REMARK 465 ILE A 28 REMARK 465 LEU A 29 REMARK 465 PRO A 30 REMARK 465 GLN A 31 REMARK 465 ILE A 32 REMARK 465 CYS A 33 REMARK 465 ILE A 34 REMARK 465 CYS A 35 REMARK 465 SER A 36 REMARK 465 GLN A 37 REMARK 465 PHE A 38 REMARK 465 SER A 39 REMARK 465 VAL A 40 REMARK 465 PRO A 41 REMARK 465 SER A 42 REMARK 465 SER A 43 REMARK 465 TYR A 44 REMARK 465 HIS A 45 REMARK 465 PHE A 46 REMARK 465 THR A 47 REMARK 465 GLU A 48 REMARK 465 ASP A 49 REMARK 465 PRO A 50 REMARK 465 GLY A 51 REMARK 465 ALA A 52 REMARK 465 PHE A 53 REMARK 465 CYS A 503 REMARK 465 LEU A 504 REMARK 465 GLU A 505 REMARK 465 SER A 506 REMARK 465 ASP A 507 REMARK 465 PHE A 508 REMARK 465 THR A 509 REMARK 465 SER A 510 REMARK 465 GLY A 511 REMARK 465 GLY A 512 REMARK 465 VAL A 513 REMARK 465 CYS A 514 REMARK 465 HIS A 963 REMARK 465 HIS A 964 REMARK 465 HIS A 965 REMARK 465 HIS A 966 REMARK 465 HIS A 967 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 HIS B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 ALA B 6 REMARK 465 MET B 7 REMARK 465 VAL B 8 REMARK 465 ASN B 9 REMARK 465 SER B 10 REMARK 465 HIS B 11 REMARK 465 ARG B 12 REMARK 465 LYS B 13 REMARK 465 PRO B 14 REMARK 465 MET B 15 REMARK 465 PHE B 16 REMARK 465 ASN B 17 REMARK 465 ILE B 18 REMARK 465 HIS B 19 REMARK 465 ARG B 20 REMARK 465 GLY B 21 REMARK 465 PHE B 22 REMARK 465 TYR B 23 REMARK 465 CYS B 24 REMARK 465 LEU B 25 REMARK 465 THR B 26 REMARK 465 ALA B 27 REMARK 465 ILE B 28 REMARK 465 LEU B 29 REMARK 465 PRO B 30 REMARK 465 GLN B 31 REMARK 465 ILE B 32 REMARK 465 CYS B 33 REMARK 465 ILE B 34 REMARK 465 CYS B 35 REMARK 465 SER B 36 REMARK 465 GLN B 37 REMARK 465 PHE B 38 REMARK 465 SER B 39 REMARK 465 VAL B 40 REMARK 465 PRO B 41 REMARK 465 SER B 42 REMARK 465 SER B 43 REMARK 465 TYR B 44 REMARK 465 HIS B 45 REMARK 465 PHE B 46 REMARK 465 THR B 47 REMARK 465 GLU B 48 REMARK 465 ASP B 49 REMARK 465 PRO B 50 REMARK 465 GLY B 51 REMARK 465 ALA B 52 REMARK 465 PHE B 53 REMARK 465 CYS B 503 REMARK 465 LEU B 504 REMARK 465 GLU B 505 REMARK 465 SER B 506 REMARK 465 ASP B 507 REMARK 465 PHE B 508 REMARK 465 THR B 509 REMARK 465 SER B 510 REMARK 465 GLY B 511 REMARK 465 GLY B 512 REMARK 465 VAL B 513 REMARK 465 CYS B 514 REMARK 465 HIS B 515 REMARK 465 SER B 516 REMARK 465 ASP B 517 REMARK 465 PRO B 518 REMARK 465 LYS B 519 REMARK 465 MET B 520 REMARK 465 THR B 521 REMARK 465 SER B 522 REMARK 465 ASN B 523 REMARK 465 MET B 524 REMARK 465 LEU B 525 REMARK 465 ALA B 526 REMARK 465 PHE B 527 REMARK 465 LEU B 528 REMARK 465 GLY B 529 REMARK 465 GLU B 530 REMARK 465 ASN B 531 REMARK 465 HIS B 962 REMARK 465 HIS B 963 REMARK 465 HIS B 964 REMARK 465 HIS B 965 REMARK 465 HIS B 966 REMARK 465 HIS B 967 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 520 CG SD CE REMARK 470 HIS A 962 CA C O CB CG ND1 CD2 REMARK 470 HIS A 962 CE1 NE2 REMARK 470 ARG B 961 CA C O CB CG CD NE REMARK 470 ARG B 961 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 PHE B 566 O LEU B 567 1.72 REMARK 500 O ARG A 961 O HOH A 2074 1.97 REMARK 500 O GLU B 576 O ALA B 579 2.00 REMARK 500 N VAL B 552 O HIS B 634 2.05 REMARK 500 O MET B 166 O HOH B 2002 2.07 REMARK 500 O THR A 426 N ASP A 428 2.07 REMARK 500 OH TYR B 298 OG1 THR B 365 2.08 REMARK 500 O GLU B 95 O HOH B 2002 2.12 REMARK 500 N GLU A 125 O HOH A 2010 2.14 REMARK 500 OD2 ASP A 658 O HOH A 2049 2.15 REMARK 500 OG SER A 275 O HOH A 2030 2.16 REMARK 500 O LEU B 215 N LYS B 217 2.17 REMARK 500 N MET B 166 O HOH B 2002 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 59 C GLU A 60 N -0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 2 C - N - CA ANGL. DEV. = 18.3 DEGREES REMARK 500 PRO C 2 C - N - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 56 -168.51 -176.80 REMARK 500 THR A 57 -63.17 110.10 REMARK 500 GLU A 60 145.71 41.43 REMARK 500 LEU A 76 -40.17 -131.40 REMARK 500 SER A 112 120.90 -176.81 REMARK 500 ASP A 114 19.57 59.29 REMARK 500 GLN A 123 -62.40 -133.25 REMARK 500 SER A 124 130.91 59.15 REMARK 500 LYS A 132 137.94 -33.36 REMARK 500 LYS A 155 133.06 -23.94 REMARK 500 PHE A 176 30.86 -152.96 REMARK 500 PRO A 214 -9.58 -57.35 REMARK 500 GLU A 245 -91.82 -35.13 REMARK 500 ASN A 338 120.10 -33.24 REMARK 500 LEU A 349 -51.27 -124.32 REMARK 500 ASP A 352 113.42 -160.90 REMARK 500 THR A 426 -168.80 -62.14 REMARK 500 LYS A 427 -60.12 53.93 REMARK 500 GLU A 441 -44.19 -135.86 REMARK 500 GLU A 448 -16.00 -47.55 REMARK 500 TYR A 455 -80.91 -95.80 REMARK 500 SER A 486 121.17 -31.76 REMARK 500 ARG A 488 -154.09 -144.64 REMARK 500 CYS A 557 40.98 -109.20 REMARK 500 GLU A 582 -91.81 -50.87 REMARK 500 PRO A 589 98.49 -69.21 REMARK 500 SER A 596 -75.39 -66.22 REMARK 500 LEU A 605 87.57 -60.05 REMARK 500 LYS A 608 9.42 -66.00 REMARK 500 THR A 609 136.08 -170.09 REMARK 500 GLU A 616 171.68 150.21 REMARK 500 ASN A 624 72.68 60.70 REMARK 500 ASP A 626 12.55 53.03 REMARK 500 LEU A 675 135.73 176.23 REMARK 500 ILE A 715 74.46 -60.10 REMARK 500 GLN A 728 -72.44 -81.53 REMARK 500 PHE A 730 -11.49 75.75 REMARK 500 SER A 744 -169.51 -72.72 REMARK 500 THR A 830 33.90 -97.31 REMARK 500 ASN A 879 16.77 -140.44 REMARK 500 SER A 906 34.43 -143.41 REMARK 500 ASN A 948 -16.74 -159.82 REMARK 500 VAL B 55 -141.93 -119.06 REMARK 500 ALA B 56 -174.04 -173.78 REMARK 500 THR B 57 103.66 -161.77 REMARK 500 GLU B 60 164.52 169.98 REMARK 500 PRO B 63 -83.31 -42.92 REMARK 500 TRP B 64 177.14 -59.83 REMARK 500 GLN B 65 -14.38 -157.42 REMARK 500 LEU B 67 48.65 -76.68 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 3 ARG C 4 148.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1119 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 370 NE2 REMARK 620 2 HIS A 374 NE2 102.7 REMARK 620 3 GLU A 393 OE1 118.0 103.0 REMARK 620 4 GLY C 1 O 96.4 98.9 133.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1119 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 370 NE2 REMARK 620 2 HIS B 374 NE2 105.8 REMARK 620 3 GLU B 393 OE2 157.1 67.3 REMARK 620 4 GLU B 393 OE1 112.5 113.4 56.2 REMARK 620 5 GLY D 1 O 98.8 106.9 104.1 117.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AB0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AMINOPEPTIDASE ERAP2 WITH LIGAND DBREF 5AB2 A 1 960 UNP Q6P179 ERAP2_HUMAN 1 960 DBREF 5AB2 B 1 960 UNP Q6P179 ERAP2_HUMAN 1 960 DBREF 5AB2 C 1 6 PDB 5AB2 5AB2 1 6 DBREF 5AB2 D 1 6 PDB 5AB2 5AB2 1 6 SEQADV 5AB2 ARG A 961 UNP Q6P179 CLONING ARTIFACT SEQADV 5AB2 HIS A 962 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 HIS A 963 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 HIS A 964 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 HIS A 965 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 HIS A 966 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 HIS A 967 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 ARG B 961 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 HIS B 962 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 HIS B 963 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 HIS B 964 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 HIS B 965 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 HIS B 966 UNP Q6P179 EXPRESSION TAG SEQADV 5AB2 HIS B 967 UNP Q6P179 EXPRESSION TAG SEQRES 1 A 967 MET PHE HIS SER SER ALA MET VAL ASN SER HIS ARG LYS SEQRES 2 A 967 PRO MET PHE ASN ILE HIS ARG GLY PHE TYR CYS LEU THR SEQRES 3 A 967 ALA ILE LEU PRO GLN ILE CYS ILE CYS SER GLN PHE SER SEQRES 4 A 967 VAL PRO SER SER TYR HIS PHE THR GLU ASP PRO GLY ALA SEQRES 5 A 967 PHE PRO VAL ALA THR ASN GLY GLU ARG PHE PRO TRP GLN SEQRES 6 A 967 GLU LEU ARG LEU PRO SER VAL VAL ILE PRO LEU HIS TYR SEQRES 7 A 967 ASP LEU PHE VAL HIS PRO ASN LEU THR SER LEU ASP PHE SEQRES 8 A 967 VAL ALA SER GLU LYS ILE GLU VAL LEU VAL SER ASN ALA SEQRES 9 A 967 THR GLN PHE ILE ILE LEU HIS SER LYS ASP LEU GLU ILE SEQRES 10 A 967 THR ASN ALA THR LEU GLN SER GLU GLU ASP SER ARG TYR SEQRES 11 A 967 MET LYS PRO GLY LYS GLU LEU LYS VAL LEU SER TYR PRO SEQRES 12 A 967 ALA HIS GLU GLN ILE ALA LEU LEU VAL PRO GLU LYS LEU SEQRES 13 A 967 THR PRO HIS LEU LYS TYR TYR VAL ALA MET ASP PHE GLN SEQRES 14 A 967 ALA LYS LEU GLY ASP GLY PHE GLU GLY PHE TYR LYS SER SEQRES 15 A 967 THR TYR ARG THR LEU GLY GLY GLU THR ARG ILE LEU ALA SEQRES 16 A 967 VAL THR ASP PHE GLU PRO THR GLN ALA ARG MET ALA PHE SEQRES 17 A 967 PRO CYS PHE ASP GLU PRO LEU PHE LYS ALA ASN PHE SER SEQRES 18 A 967 ILE LYS ILE ARG ARG GLU SER ARG HIS ILE ALA LEU SER SEQRES 19 A 967 ASN MET PRO LYS VAL LYS THR ILE GLU LEU GLU GLY GLY SEQRES 20 A 967 LEU LEU GLU ASP HIS PHE GLU THR THR VAL LYS MET SER SEQRES 21 A 967 THR TYR LEU VAL ALA TYR ILE VAL CYS ASP PHE HIS SER SEQRES 22 A 967 LEU SER GLY PHE THR SER SER GLY VAL LYS VAL SER ILE SEQRES 23 A 967 TYR ALA SER PRO ASP LYS ARG ASN GLN THR HIS TYR ALA SEQRES 24 A 967 LEU GLN ALA SER LEU LYS LEU LEU ASP PHE TYR GLU LYS SEQRES 25 A 967 TYR PHE ASP ILE TYR TYR PRO LEU SER LYS LEU ASP LEU SEQRES 26 A 967 ILE ALA ILE PRO ASP PHE ALA PRO GLY ALA MET GLU ASN SEQRES 27 A 967 TRP GLY LEU ILE THR TYR ARG GLU THR SER LEU LEU PHE SEQRES 28 A 967 ASP PRO LYS THR SER SER ALA SER ASP LYS LEU TRP VAL SEQRES 29 A 967 THR ARG VAL ILE ALA HIS GLU LEU ALA HIS GLN TRP PHE SEQRES 30 A 967 GLY ASN LEU VAL THR MET GLU TRP TRP ASN ASP ILE TRP SEQRES 31 A 967 LEU LYS GLU GLY PHE ALA LYS TYR MET GLU LEU ILE ALA SEQRES 32 A 967 VAL ASN ALA THR TYR PRO GLU LEU GLN PHE ASP ASP TYR SEQRES 33 A 967 PHE LEU ASN VAL CYS PHE GLU VAL ILE THR LYS ASP SER SEQRES 34 A 967 LEU ASN SER SER ARG PRO ILE SER LYS PRO ALA GLU THR SEQRES 35 A 967 PRO THR GLN ILE GLN GLU MET PHE ASP GLU VAL SER TYR SEQRES 36 A 967 ASN LYS GLY ALA CYS ILE LEU ASN MET LEU LYS ASP PHE SEQRES 37 A 967 LEU GLY GLU GLU LYS PHE GLN LYS GLY ILE ILE GLN TYR SEQRES 38 A 967 LEU LYS LYS PHE SER TYR ARG ASN ALA LYS ASN ASP ASP SEQRES 39 A 967 LEU TRP SER SER LEU SER ASN SER CYS LEU GLU SER ASP SEQRES 40 A 967 PHE THR SER GLY GLY VAL CYS HIS SER ASP PRO LYS MET SEQRES 41 A 967 THR SER ASN MET LEU ALA PHE LEU GLY GLU ASN ALA GLU SEQRES 42 A 967 VAL LYS GLU MET MET THR THR TRP THR LEU GLN LYS GLY SEQRES 43 A 967 ILE PRO LEU LEU VAL VAL LYS GLN ASP GLY CYS SER LEU SEQRES 44 A 967 ARG LEU GLN GLN GLU ARG PHE LEU GLN GLY VAL PHE GLN SEQRES 45 A 967 GLU ASP PRO GLU TRP ARG ALA LEU GLN GLU ARG TYR LEU SEQRES 46 A 967 TRP HIS ILE PRO LEU THR TYR SER THR SER SER SER ASN SEQRES 47 A 967 VAL ILE HIS ARG HIS ILE LEU LYS SER LYS THR ASP THR SEQRES 48 A 967 LEU ASP LEU PRO GLU LYS THR SER TRP VAL LYS PHE ASN SEQRES 49 A 967 VAL ASP SER ASN GLY TYR TYR ILE VAL HIS TYR GLU GLY SEQRES 50 A 967 HIS GLY TRP ASP GLN LEU ILE THR GLN LEU ASN GLN ASN SEQRES 51 A 967 HIS THR LEU LEU ARG PRO LYS ASP ARG VAL GLY LEU ILE SEQRES 52 A 967 HIS ASP VAL PHE GLN LEU VAL GLY ALA GLY ARG LEU THR SEQRES 53 A 967 LEU ASP LYS ALA LEU ASP MET THR TYR TYR LEU GLN HIS SEQRES 54 A 967 GLU THR SER SER PRO ALA LEU LEU GLU GLY LEU SER TYR SEQRES 55 A 967 LEU GLU SER PHE TYR HIS MET MET ASP ARG ARG ASN ILE SEQRES 56 A 967 SER ASP ILE SER GLU ASN LEU LYS ARG TYR LEU LEU GLN SEQRES 57 A 967 TYR PHE LYS PRO VAL ILE ASP ARG GLN SER TRP SER ASP SEQRES 58 A 967 LYS GLY SER VAL TRP ASP ARG MET LEU ARG SER ALA LEU SEQRES 59 A 967 LEU LYS LEU ALA CYS ASP LEU ASN HIS ALA PRO CYS ILE SEQRES 60 A 967 GLN LYS ALA ALA GLU LEU PHE SER GLN TRP MET GLU SER SEQRES 61 A 967 SER GLY LYS LEU ASN ILE PRO THR ASP VAL LEU LYS ILE SEQRES 62 A 967 VAL TYR SER VAL GLY ALA GLN THR THR ALA GLY TRP ASN SEQRES 63 A 967 TYR LEU LEU GLU GLN TYR GLU LEU SER MET SER SER ALA SEQRES 64 A 967 GLU GLN ASN LYS ILE LEU TYR ALA LEU SER THR SER LYS SEQRES 65 A 967 HIS GLN GLU LYS LEU LEU LYS LEU ILE GLU LEU GLY MET SEQRES 66 A 967 GLU GLY LYS VAL ILE LYS THR GLN ASN LEU ALA ALA LEU SEQRES 67 A 967 LEU HIS ALA ILE ALA ARG ARG PRO LYS GLY GLN GLN LEU SEQRES 68 A 967 ALA TRP ASP PHE VAL ARG GLU ASN TRP THR HIS LEU LEU SEQRES 69 A 967 LYS LYS PHE ASP LEU GLY SER TYR ASP ILE ARG MET ILE SEQRES 70 A 967 ILE SER GLY THR THR ALA HIS PHE SER SER LYS ASP LYS SEQRES 71 A 967 LEU GLN GLU VAL LYS LEU PHE PHE GLU SER LEU GLU ALA SEQRES 72 A 967 GLN GLY SER HIS LEU ASP ILE PHE GLN THR VAL LEU GLU SEQRES 73 A 967 THR ILE THR LYS ASN ILE LYS TRP LEU GLU LYS ASN LEU SEQRES 74 A 967 PRO THR LEU ARG THR TRP LEU MET VAL ASN THR ARG HIS SEQRES 75 A 967 HIS HIS HIS HIS HIS SEQRES 1 B 967 MET PHE HIS SER SER ALA MET VAL ASN SER HIS ARG LYS SEQRES 2 B 967 PRO MET PHE ASN ILE HIS ARG GLY PHE TYR CYS LEU THR SEQRES 3 B 967 ALA ILE LEU PRO GLN ILE CYS ILE CYS SER GLN PHE SER SEQRES 4 B 967 VAL PRO SER SER TYR HIS PHE THR GLU ASP PRO GLY ALA SEQRES 5 B 967 PHE PRO VAL ALA THR ASN GLY GLU ARG PHE PRO TRP GLN SEQRES 6 B 967 GLU LEU ARG LEU PRO SER VAL VAL ILE PRO LEU HIS TYR SEQRES 7 B 967 ASP LEU PHE VAL HIS PRO ASN LEU THR SER LEU ASP PHE SEQRES 8 B 967 VAL ALA SER GLU LYS ILE GLU VAL LEU VAL SER ASN ALA SEQRES 9 B 967 THR GLN PHE ILE ILE LEU HIS SER LYS ASP LEU GLU ILE SEQRES 10 B 967 THR ASN ALA THR LEU GLN SER GLU GLU ASP SER ARG TYR SEQRES 11 B 967 MET LYS PRO GLY LYS GLU LEU LYS VAL LEU SER TYR PRO SEQRES 12 B 967 ALA HIS GLU GLN ILE ALA LEU LEU VAL PRO GLU LYS LEU SEQRES 13 B 967 THR PRO HIS LEU LYS TYR TYR VAL ALA MET ASP PHE GLN SEQRES 14 B 967 ALA LYS LEU GLY ASP GLY PHE GLU GLY PHE TYR LYS SER SEQRES 15 B 967 THR TYR ARG THR LEU GLY GLY GLU THR ARG ILE LEU ALA SEQRES 16 B 967 VAL THR ASP PHE GLU PRO THR GLN ALA ARG MET ALA PHE SEQRES 17 B 967 PRO CYS PHE ASP GLU PRO LEU PHE LYS ALA ASN PHE SER SEQRES 18 B 967 ILE LYS ILE ARG ARG GLU SER ARG HIS ILE ALA LEU SER SEQRES 19 B 967 ASN MET PRO LYS VAL LYS THR ILE GLU LEU GLU GLY GLY SEQRES 20 B 967 LEU LEU GLU ASP HIS PHE GLU THR THR VAL LYS MET SER SEQRES 21 B 967 THR TYR LEU VAL ALA TYR ILE VAL CYS ASP PHE HIS SER SEQRES 22 B 967 LEU SER GLY PHE THR SER SER GLY VAL LYS VAL SER ILE SEQRES 23 B 967 TYR ALA SER PRO ASP LYS ARG ASN GLN THR HIS TYR ALA SEQRES 24 B 967 LEU GLN ALA SER LEU LYS LEU LEU ASP PHE TYR GLU LYS SEQRES 25 B 967 TYR PHE ASP ILE TYR TYR PRO LEU SER LYS LEU ASP LEU SEQRES 26 B 967 ILE ALA ILE PRO ASP PHE ALA PRO GLY ALA MET GLU ASN SEQRES 27 B 967 TRP GLY LEU ILE THR TYR ARG GLU THR SER LEU LEU PHE SEQRES 28 B 967 ASP PRO LYS THR SER SER ALA SER ASP LYS LEU TRP VAL SEQRES 29 B 967 THR ARG VAL ILE ALA HIS GLU LEU ALA HIS GLN TRP PHE SEQRES 30 B 967 GLY ASN LEU VAL THR MET GLU TRP TRP ASN ASP ILE TRP SEQRES 31 B 967 LEU LYS GLU GLY PHE ALA LYS TYR MET GLU LEU ILE ALA SEQRES 32 B 967 VAL ASN ALA THR TYR PRO GLU LEU GLN PHE ASP ASP TYR SEQRES 33 B 967 PHE LEU ASN VAL CYS PHE GLU VAL ILE THR LYS ASP SER SEQRES 34 B 967 LEU ASN SER SER ARG PRO ILE SER LYS PRO ALA GLU THR SEQRES 35 B 967 PRO THR GLN ILE GLN GLU MET PHE ASP GLU VAL SER TYR SEQRES 36 B 967 ASN LYS GLY ALA CYS ILE LEU ASN MET LEU LYS ASP PHE SEQRES 37 B 967 LEU GLY GLU GLU LYS PHE GLN LYS GLY ILE ILE GLN TYR SEQRES 38 B 967 LEU LYS LYS PHE SER TYR ARG ASN ALA LYS ASN ASP ASP SEQRES 39 B 967 LEU TRP SER SER LEU SER ASN SER CYS LEU GLU SER ASP SEQRES 40 B 967 PHE THR SER GLY GLY VAL CYS HIS SER ASP PRO LYS MET SEQRES 41 B 967 THR SER ASN MET LEU ALA PHE LEU GLY GLU ASN ALA GLU SEQRES 42 B 967 VAL LYS GLU MET MET THR THR TRP THR LEU GLN LYS GLY SEQRES 43 B 967 ILE PRO LEU LEU VAL VAL LYS GLN ASP GLY CYS SER LEU SEQRES 44 B 967 ARG LEU GLN GLN GLU ARG PHE LEU GLN GLY VAL PHE GLN SEQRES 45 B 967 GLU ASP PRO GLU TRP ARG ALA LEU GLN GLU ARG TYR LEU SEQRES 46 B 967 TRP HIS ILE PRO LEU THR TYR SER THR SER SER SER ASN SEQRES 47 B 967 VAL ILE HIS ARG HIS ILE LEU LYS SER LYS THR ASP THR SEQRES 48 B 967 LEU ASP LEU PRO GLU LYS THR SER TRP VAL LYS PHE ASN SEQRES 49 B 967 VAL ASP SER ASN GLY TYR TYR ILE VAL HIS TYR GLU GLY SEQRES 50 B 967 HIS GLY TRP ASP GLN LEU ILE THR GLN LEU ASN GLN ASN SEQRES 51 B 967 HIS THR LEU LEU ARG PRO LYS ASP ARG VAL GLY LEU ILE SEQRES 52 B 967 HIS ASP VAL PHE GLN LEU VAL GLY ALA GLY ARG LEU THR SEQRES 53 B 967 LEU ASP LYS ALA LEU ASP MET THR TYR TYR LEU GLN HIS SEQRES 54 B 967 GLU THR SER SER PRO ALA LEU LEU GLU GLY LEU SER TYR SEQRES 55 B 967 LEU GLU SER PHE TYR HIS MET MET ASP ARG ARG ASN ILE SEQRES 56 B 967 SER ASP ILE SER GLU ASN LEU LYS ARG TYR LEU LEU GLN SEQRES 57 B 967 TYR PHE LYS PRO VAL ILE ASP ARG GLN SER TRP SER ASP SEQRES 58 B 967 LYS GLY SER VAL TRP ASP ARG MET LEU ARG SER ALA LEU SEQRES 59 B 967 LEU LYS LEU ALA CYS ASP LEU ASN HIS ALA PRO CYS ILE SEQRES 60 B 967 GLN LYS ALA ALA GLU LEU PHE SER GLN TRP MET GLU SER SEQRES 61 B 967 SER GLY LYS LEU ASN ILE PRO THR ASP VAL LEU LYS ILE SEQRES 62 B 967 VAL TYR SER VAL GLY ALA GLN THR THR ALA GLY TRP ASN SEQRES 63 B 967 TYR LEU LEU GLU GLN TYR GLU LEU SER MET SER SER ALA SEQRES 64 B 967 GLU GLN ASN LYS ILE LEU TYR ALA LEU SER THR SER LYS SEQRES 65 B 967 HIS GLN GLU LYS LEU LEU LYS LEU ILE GLU LEU GLY MET SEQRES 66 B 967 GLU GLY LYS VAL ILE LYS THR GLN ASN LEU ALA ALA LEU SEQRES 67 B 967 LEU HIS ALA ILE ALA ARG ARG PRO LYS GLY GLN GLN LEU SEQRES 68 B 967 ALA TRP ASP PHE VAL ARG GLU ASN TRP THR HIS LEU LEU SEQRES 69 B 967 LYS LYS PHE ASP LEU GLY SER TYR ASP ILE ARG MET ILE SEQRES 70 B 967 ILE SER GLY THR THR ALA HIS PHE SER SER LYS ASP LYS SEQRES 71 B 967 LEU GLN GLU VAL LYS LEU PHE PHE GLU SER LEU GLU ALA SEQRES 72 B 967 GLN GLY SER HIS LEU ASP ILE PHE GLN THR VAL LEU GLU SEQRES 73 B 967 THR ILE THR LYS ASN ILE LYS TRP LEU GLU LYS ASN LEU SEQRES 74 B 967 PRO THR LEU ARG THR TRP LEU MET VAL ASN THR ARG HIS SEQRES 75 B 967 HIS HIS HIS HIS HIS SEQRES 1 C 6 GLY PRO GLY ARG ALA PHE SEQRES 1 D 6 GLY PRO GLY ARG ALA PHE MODRES 5AB2 ASN A 85 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN A 103 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN A 119 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN A 219 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN A 294 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN A 405 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN A 431 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN A 650 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN A 714 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN B 85 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN B 103 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN B 219 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN B 405 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN B 431 ASN GLYCOSYLATION SITE MODRES 5AB2 ASN B 650 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET NAG I 2 14 HET NAG J 1 14 HET NAG J 2 14 HET NAG K 1 14 HET NAG K 2 14 HET NAG L 1 14 HET NAG L 2 14 HET BMA L 3 11 HET BMA L 4 11 HET NAG M 1 14 HET NAG M 2 14 HET NAG N 1 14 HET NAG N 2 14 HET NAG A1009 14 HET NAG A1018 14 HET ZN A1119 1 HET EDO A1962 4 HET EDO A1963 4 HET EDO A1964 4 HET NAG B1005 14 HET NAG B1010 14 HET NAG B1011 14 HET ZN B1119 1 HET EDO B1961 4 HET EDO B1962 4 HET EDO B1963 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 5 NAG 25(C8 H15 N O6) FORMUL 5 BMA 4(C6 H12 O6) FORMUL 17 ZN 2(ZN 2+) FORMUL 18 EDO 6(C2 H6 O2) FORMUL 28 HOH *102(H2 O) HELIX 1 1 ASP A 127 MET A 131 5 5 HELIX 2 2 PRO A 143 HIS A 145 5 3 HELIX 3 3 GLN A 203 ALA A 207 5 5 HELIX 4 4 SER A 260 VAL A 264 5 5 HELIX 5 5 SER A 289 GLN A 295 5 7 HELIX 6 6 THR A 296 ASP A 315 1 20 HELIX 7 7 GLU A 346 LEU A 350 1 5 HELIX 8 8 SER A 357 PHE A 377 1 21 HELIX 9 9 TRP A 385 ASP A 388 5 4 HELIX 10 10 ILE A 389 TYR A 408 1 20 HELIX 11 11 PRO A 409 LEU A 411 5 3 HELIX 12 12 GLN A 412 THR A 426 1 15 HELIX 13 13 THR A 442 GLU A 448 1 7 HELIX 14 14 TYR A 455 SER A 486 1 32 HELIX 15 15 LYS A 491 ASN A 501 1 11 HELIX 16 16 MET A 524 GLN A 544 1 21 HELIX 17 17 GLU A 576 GLN A 581 1 6 HELIX 18 18 VAL A 625 ASN A 628 5 4 HELIX 19 19 HIS A 638 ASN A 650 1 13 HELIX 20 20 HIS A 651 LEU A 654 5 4 HELIX 21 21 ARG A 655 ALA A 672 1 18 HELIX 22 22 THR A 676 THR A 684 1 9 HELIX 23 23 TYR A 685 GLU A 690 5 6 HELIX 24 24 SER A 692 ARG A 713 1 22 HELIX 25 25 ILE A 715 TYR A 729 1 15 HELIX 26 26 PHE A 730 GLN A 737 1 8 HELIX 27 27 SER A 744 LEU A 761 1 18 HELIX 28 28 HIS A 763 GLU A 779 1 17 HELIX 29 29 PRO A 787 ASP A 789 5 3 HELIX 30 30 VAL A 790 ALA A 799 1 10 HELIX 31 31 THR A 801 SER A 815 1 15 HELIX 32 32 SER A 817 LEU A 828 1 12 HELIX 33 33 HIS A 833 GLY A 847 1 15 HELIX 34 34 LYS A 851 GLN A 853 5 3 HELIX 35 35 ASN A 854 ARG A 865 1 12 HELIX 36 36 GLY A 868 ASN A 879 1 12 HELIX 37 37 ASN A 879 PHE A 887 1 9 HELIX 38 38 SER A 891 ALA A 903 1 13 HELIX 39 39 SER A 907 GLU A 922 1 16 HELIX 40 40 ASP A 929 LYS A 947 1 19 HELIX 41 41 ASN A 948 THR A 960 1 13 HELIX 42 42 GLN B 203 ALA B 207 5 5 HELIX 43 43 SER B 260 VAL B 264 5 5 HELIX 44 44 SER B 289 GLN B 295 5 7 HELIX 45 45 THR B 296 TYR B 313 1 18 HELIX 46 46 THR B 347 LEU B 349 5 3 HELIX 47 47 SER B 357 PHE B 377 1 21 HELIX 48 48 ILE B 389 TYR B 408 1 20 HELIX 49 49 PRO B 409 GLN B 412 5 4 HELIX 50 50 TYR B 416 SER B 429 1 14 HELIX 51 51 THR B 442 GLU B 448 1 7 HELIX 52 52 ASP B 451 PHE B 468 1 18 HELIX 53 53 LEU B 469 ILE B 478 1 10 HELIX 54 54 ILE B 478 LYS B 483 1 6 HELIX 55 55 ASN B 492 TRP B 496 5 5 HELIX 56 56 VAL B 534 TRP B 541 5 8 HELIX 57 57 ASN B 624 ASN B 628 5 5 HELIX 58 58 GLN B 642 ASN B 648 1 7 HELIX 59 59 ARG B 655 VAL B 670 1 16 HELIX 60 60 THR B 676 ASP B 682 1 7 HELIX 61 61 MET B 683 TYR B 686 5 4 HELIX 62 62 SER B 692 ARG B 712 1 21 HELIX 63 63 ILE B 715 TYR B 729 1 15 HELIX 64 64 PHE B 730 ARG B 736 1 7 HELIX 65 65 SER B 744 ASP B 760 1 17 HELIX 66 66 HIS B 763 GLU B 779 1 17 HELIX 67 67 PRO B 787 ASP B 789 5 3 HELIX 68 68 VAL B 790 GLY B 798 1 9 HELIX 69 69 GLY B 804 LEU B 814 1 11 HELIX 70 70 SER B 817 LEU B 828 1 12 HELIX 71 71 GLU B 835 GLY B 847 1 13 HELIX 72 72 LYS B 851 GLN B 853 5 3 HELIX 73 73 ASN B 854 ALA B 863 1 10 HELIX 74 74 GLY B 868 ASN B 879 1 12 HELIX 75 75 ASN B 879 PHE B 887 1 9 HELIX 76 76 SER B 891 ALA B 903 1 13 HELIX 77 77 LYS B 910 GLN B 924 1 15 HELIX 78 78 LEU B 928 THR B 960 1 33 SHEET 1 AA 7 GLU A 116 THR A 121 0 SHEET 2 AA 7 LYS A 161 LYS A 171 -1 O ALA A 165 N THR A 121 SHEET 3 AA 7 ASP A 90 VAL A 101 -1 O PHE A 91 N ALA A 170 SHEET 4 AA 7 VAL A 73 ASN A 85 -1 O ILE A 74 N LEU A 100 SHEET 5 AA 7 ASN A 219 ARG A 226 1 O ASN A 219 N TYR A 78 SHEET 6 AA 7 LEU A 249 PHE A 253 -1 O LEU A 249 N ARG A 226 SHEET 7 AA 7 LYS A 238 GLU A 243 -1 N VAL A 239 O HIS A 252 SHEET 1 AB 3 PHE A 107 HIS A 111 0 SHEET 2 AB 3 GLN A 147 LEU A 151 -1 O ILE A 148 N LEU A 110 SHEET 3 AB 3 LYS A 138 TYR A 142 -1 O LYS A 138 N LEU A 151 SHEET 1 AC 4 GLY A 178 ARG A 185 0 SHEET 2 AC 4 THR A 191 ASP A 198 -1 O ARG A 192 N TYR A 184 SHEET 3 AC 4 TYR A 266 CYS A 269 -1 O TYR A 266 N THR A 197 SHEET 4 AC 4 ILE A 231 SER A 234 -1 O ILE A 231 N CYS A 269 SHEET 1 AD 5 HIS A 272 PHE A 277 0 SHEET 2 AD 5 LYS A 283 ALA A 288 -1 O VAL A 284 N GLY A 276 SHEET 3 AD 5 LYS A 322 ILE A 328 1 O LEU A 323 N SER A 285 SHEET 4 AD 5 LEU A 341 ARG A 345 1 O ILE A 342 N ILE A 326 SHEET 5 AD 5 ALA A 335 MET A 336 -1 O MET A 336 N THR A 343 SHEET 1 AE 2 THR A 382 MET A 383 0 SHEET 2 AE 2 ASN A 489 ALA A 490 1 N ALA A 490 O THR A 382 SHEET 1 AF 2 GLN A 563 ARG A 565 0 SHEET 2 AF 2 PRO A 548 GLN A 554 -1 O LEU A 549 N GLU A 564 SHEET 1 AG 4 ASP A 610 ASP A 613 0 SHEET 2 AG 4 SER A 558 LEU A 561 -1 O LEU A 559 N LEU A 612 SHEET 3 AG 4 PRO A 548 GLN A 554 -1 O LYS A 553 N ARG A 560 SHEET 4 AG 4 ILE A 632 GLU A 636 1 O ILE A 632 N LEU A 550 SHEET 1 AH 4 ASP A 610 ASP A 613 0 SHEET 2 AH 4 SER A 558 LEU A 561 -1 O LEU A 559 N LEU A 612 SHEET 3 AH 4 PRO A 548 GLN A 554 -1 O LYS A 553 N ARG A 560 SHEET 4 AH 4 GLN A 563 ARG A 565 -1 O GLU A 564 N LEU A 549 SHEET 1 AI 2 ILE A 632 GLU A 636 0 SHEET 2 AI 2 PRO A 548 GLN A 554 1 O PRO A 548 N ILE A 632 SHEET 1 AJ 3 HIS A 601 LEU A 605 0 SHEET 2 AJ 3 ILE A 588 THR A 594 -1 O LEU A 590 N HIS A 603 SHEET 3 AJ 3 VAL A 621 PHE A 623 -1 O LYS A 622 N SER A 593 SHEET 1 BA 7 GLU B 116 SER B 124 0 SHEET 2 BA 7 TYR B 162 LYS B 171 -1 O TYR B 163 N GLN B 123 SHEET 3 BA 7 ASP B 90 LEU B 100 -1 O PHE B 91 N ALA B 170 SHEET 4 BA 7 ILE B 74 ASN B 85 -1 O ILE B 74 N LEU B 100 SHEET 5 BA 7 ASN B 219 ARG B 226 1 O ASN B 219 N TYR B 78 SHEET 6 BA 7 LEU B 249 PHE B 253 -1 O LEU B 249 N ARG B 226 SHEET 7 BA 7 LYS B 238 THR B 241 -1 N VAL B 239 O HIS B 252 SHEET 1 BB 3 ILE B 108 HIS B 111 0 SHEET 2 BB 3 GLN B 147 LEU B 151 -1 O ILE B 148 N LEU B 110 SHEET 3 BB 3 LYS B 138 TYR B 142 -1 O LYS B 138 N LEU B 151 SHEET 1 BC 2 GLY B 178 ARG B 185 0 SHEET 2 BC 2 THR B 191 ASP B 198 -1 O ARG B 192 N TYR B 184 SHEET 1 BD 2 ILE B 231 SER B 234 0 SHEET 2 BD 2 TYR B 266 CYS B 269 -1 O ILE B 267 N LEU B 233 SHEET 1 BE 5 HIS B 272 PHE B 277 0 SHEET 2 BE 5 LYS B 283 ALA B 288 -1 O VAL B 284 N GLY B 276 SHEET 3 BE 5 LYS B 322 ILE B 328 1 O LEU B 323 N SER B 285 SHEET 4 BE 5 LEU B 341 ARG B 345 1 O ILE B 342 N ILE B 326 SHEET 5 BE 5 ALA B 335 MET B 336 -1 O MET B 336 N THR B 343 SHEET 1 BF 2 VAL B 381 MET B 383 0 SHEET 2 BF 2 ARG B 488 ALA B 490 1 O ARG B 488 N THR B 382 SHEET 1 BG 3 ARG B 560 ARG B 565 0 SHEET 2 BG 3 PRO B 548 LYS B 553 -1 O LEU B 549 N GLU B 564 SHEET 3 BG 3 ILE B 632 TYR B 635 1 O ILE B 632 N LEU B 550 SHEET 1 BH 2 THR B 591 TYR B 592 0 SHEET 2 BH 2 HIS B 601 ARG B 602 -1 O HIS B 601 N TYR B 592 SSBOND 1 CYS A 421 CYS A 460 1555 1555 2.02 SSBOND 2 CYS A 759 CYS A 766 1555 1555 2.05 SSBOND 3 CYS B 421 CYS B 460 1555 1555 2.03 SSBOND 4 CYS B 759 CYS B 766 1555 1555 2.03 LINK ND2 ASN A 85 C1 NAG E 1 1555 1555 1.46 LINK ND2 ASN A 103 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN A 119 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN A 219 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN A 294 C1 NAG K 1 1555 1555 1.44 LINK ND2 ASN A 405 C1 NAG A1009 1555 1555 1.43 LINK ND2 ASN A 431 C1 NAG A1018 1555 1555 1.45 LINK ND2 ASN A 650 C1 NAG H 1 1555 1555 1.65 LINK ND2 ASN A 714 C1 NAG J 1 1555 1555 1.43 LINK ND2 ASN B 85 C1 NAG L 1 1555 1555 1.48 LINK ND2 ASN B 103 C1 NAG B1005 1555 1555 1.45 LINK ND2 ASN B 219 C1 NAG N 1 1555 1555 1.43 LINK ND2 ASN B 405 C1 NAG B1010 1555 1555 1.46 LINK ND2 ASN B 431 C1 NAG B1011 1555 1555 1.46 LINK ND2 ASN B 650 C1 NAG M 1 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.45 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.46 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.45 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.44 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.46 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.45 LINK O4 NAG L 1 C1 NAG L 2 1555 1555 1.46 LINK O4 NAG L 2 C1 BMA L 3 1555 1555 1.45 LINK O6 BMA L 3 C1 BMA L 4 1555 1555 1.45 LINK O4 NAG M 1 C1 NAG M 2 1555 1555 1.45 LINK O4 NAG N 1 C1 NAG N 2 1555 1555 1.44 LINK NE2 HIS A 370 ZN ZN A1119 1555 1555 2.07 LINK NE2 HIS A 374 ZN ZN A1119 1555 1555 2.08 LINK OE1 GLU A 393 ZN ZN A1119 1555 1555 1.96 LINK ZN ZN A1119 O GLY C 1 1555 1555 1.97 LINK NE2 HIS B 370 ZN ZN B1119 1555 1555 1.97 LINK NE2 HIS B 374 ZN ZN B1119 1555 1555 2.03 LINK OE2 GLU B 393 ZN ZN B1119 1555 1555 2.47 LINK OE1 GLU B 393 ZN ZN B1119 1555 1555 2.05 LINK ZN ZN B1119 O GLY D 1 1555 1555 2.05 CISPEP 1 LYS A 132 PRO A 133 0 6.04 CISPEP 2 GLY A 134 LYS A 135 0 10.77 CISPEP 3 GLU A 200 PRO A 201 0 -8.41 CISPEP 4 THR B 57 ASN B 58 0 -1.54 CISPEP 5 GLY B 59 GLU B 60 0 -12.67 CISPEP 6 LYS B 132 PRO B 133 0 -0.58 CISPEP 7 GLU B 200 PRO B 201 0 1.53 CISPEP 8 ASP B 574 PRO B 575 0 -4.65 CISPEP 9 LEU B 614 PRO B 615 0 2.04 CISPEP 10 GLN B 649 ASN B 650 0 -5.10 CISPEP 11 LEU B 889 GLY B 890 0 4.62 CISPEP 12 GLY B 925 SER B 926 0 -4.65 CISPEP 13 GLY C 1 PRO C 2 0 3.39 CISPEP 14 PRO C 2 GLY C 3 0 3.35 CISPEP 15 PRO C 2 GLY C 3 0 -4.58 CISPEP 16 ARG C 4 ALA C 5 0 -22.17 CISPEP 17 GLY D 1 PRO D 2 0 5.57 CISPEP 18 PRO D 2 GLY D 3 0 0.69 CRYST1 75.650 135.465 128.212 90.00 90.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013219 0.000000 0.000055 0.00000 SCALE2 0.000000 0.007382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007800 0.00000