HEADER TRANSLATION 09-AUG-15 5ABY TITLE COMPLEX OF C. ELEGANS EIF4E-3 WITH THE 4E-BINDING PROTEIN MEXTLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-3; COMPND 3 CHAIN: A, C, E; COMPND 4 FRAGMENT: UNP RESIDUES 30-215; COMPND 5 SYNONYM: EIF-4E-3, EIF4E-3, EIF-4F 25 KDA SUBUNIT, MRNA CAP-BINDING COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 4E-BINDING PROTEIN MEXTLI; COMPND 10 CHAIN: B, D, F; COMPND 11 FRAGMENT: UNP RESIDUES 471-507; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: ROUNDWORM; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMCN (PNYC); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 13 ORGANISM_COMMON: ROUNDWORM; SOURCE 14 ORGANISM_TAXID: 6239; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PETMCN (PNEA) KEYWDS TRANSLATION, GENE REGULATION, CAP BINDING PROTEIN, 4E BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.PETER,O.WEICHENRIEDER REVDAT 4 10-JAN-24 5ABY 1 REMARK LINK REVDAT 3 23-OCT-19 5ABY 1 ATOM REVDAT 2 23-SEP-15 5ABY 1 JRNL REVDAT 1 02-SEP-15 5ABY 0 JRNL AUTH D.PETER,R.WEBER,C.KOENE,M.-Y.CHUNG,L.EBERTSCH,V.TRUFFAULT, JRNL AUTH 2 O.WEICHENRIEDER,C.IGREJA,E.IZAURRALDE JRNL TITL MEXTLI PROTEINS USE BOTH CANONICAL BIPARTITE AND NOVEL JRNL TITL 2 TRIPARTITE BINDING MODES TO FORM EIF4E COMPLEXES THAT JRNL TITL 3 DISPLAY DIFFERENTIAL SENSITIVITY TO 4E-BP REGULATION JRNL REF GENES DEV. V. 29 1835 2015 JRNL REFN ISSN 0890-9369 JRNL PMID 26294658 JRNL DOI 10.1101/GAD.269068.115 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 58873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5344 - 5.3771 1.00 2857 171 0.1841 0.1798 REMARK 3 2 5.3771 - 4.2690 1.00 2725 151 0.1354 0.1623 REMARK 3 3 4.2690 - 3.7296 1.00 2706 153 0.1420 0.1790 REMARK 3 4 3.7296 - 3.3887 1.00 2716 131 0.1590 0.1854 REMARK 3 5 3.3887 - 3.1459 1.00 2657 149 0.1803 0.2231 REMARK 3 6 3.1459 - 2.9605 1.00 2692 123 0.1816 0.2175 REMARK 3 7 2.9605 - 2.8122 1.00 2663 144 0.1787 0.2304 REMARK 3 8 2.8122 - 2.6898 1.00 2677 122 0.1787 0.2554 REMARK 3 9 2.6898 - 2.5863 1.00 2673 121 0.1714 0.2145 REMARK 3 10 2.5863 - 2.4971 1.00 2657 111 0.1656 0.2124 REMARK 3 11 2.4971 - 2.4190 1.00 2630 150 0.1740 0.1871 REMARK 3 12 2.4190 - 2.3498 1.00 2650 142 0.1784 0.2519 REMARK 3 13 2.3498 - 2.2880 1.00 2607 151 0.1822 0.2359 REMARK 3 14 2.2880 - 2.2322 1.00 2645 133 0.1782 0.2292 REMARK 3 15 2.2322 - 2.1814 1.00 2657 139 0.1911 0.2393 REMARK 3 16 2.1814 - 2.1350 1.00 2577 143 0.1925 0.2465 REMARK 3 17 2.1350 - 2.0923 1.00 2651 140 0.2101 0.2733 REMARK 3 18 2.0923 - 2.0528 1.00 2600 160 0.2164 0.2625 REMARK 3 19 2.0528 - 2.0161 1.00 2643 135 0.2206 0.2829 REMARK 3 20 2.0161 - 1.9820 1.00 2618 127 0.2270 0.2913 REMARK 3 21 1.9820 - 1.9500 1.00 2635 141 0.2383 0.2747 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5604 REMARK 3 ANGLE : 1.045 7574 REMARK 3 CHIRALITY : 0.042 809 REMARK 3 PLANARITY : 0.004 963 REMARK 3 DIHEDRAL : 13.335 2109 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE REFINED IN THE RIDING REMARK 3 POSITIONS. THE FOLLOWING RESIDUES ARE DISORDERED. CHAIN A, REMARK 3 RESIDUES 203 TO 209. CHAIN C, RESIDUES 203 TO 208. CHAIN E, REMARK 3 RESIDUES 202 TO 209. CHAIN F, RESIDUE 507. REMARK 4 REMARK 4 5ABY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58918 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 47.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.17000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5ABX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH=8.0, 0.2M MGCL2, 17% REMARK 280 PEG6000, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.62000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.79000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.62000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.79000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C2051 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 PRO A 27 REMARK 465 HIS A 28 REMARK 465 MET A 29 REMARK 465 ALA A 203 REMARK 465 ARG A 204 REMARK 465 THR A 205 REMARK 465 SER A 206 REMARK 465 SER A 207 REMARK 465 THR A 208 REMARK 465 VAL A 209 REMARK 465 GLY B 467 REMARK 465 PRO B 468 REMARK 465 GLY C 26 REMARK 465 PRO C 27 REMARK 465 HIS C 28 REMARK 465 ALA C 203 REMARK 465 ARG C 204 REMARK 465 THR C 205 REMARK 465 SER C 206 REMARK 465 SER C 207 REMARK 465 THR C 208 REMARK 465 GLY D 467 REMARK 465 PRO D 468 REMARK 465 GLY E 26 REMARK 465 PRO E 27 REMARK 465 HIS E 28 REMARK 465 MET E 29 REMARK 465 SER E 202 REMARK 465 ALA E 203 REMARK 465 ARG E 204 REMARK 465 THR E 205 REMARK 465 SER E 206 REMARK 465 SER E 207 REMARK 465 THR E 208 REMARK 465 VAL E 209 REMARK 465 GLY F 467 REMARK 465 ALA F 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU D 496 HH21 ARG D 499 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2007 O HOH E 2115 2655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 20.15 -149.01 REMARK 500 LEU A 117 -125.04 40.99 REMARK 500 PHE A 140 53.59 -95.73 REMARK 500 ASP A 141 -124.27 53.42 REMARK 500 ALA B 501 56.75 -148.64 REMARK 500 ASP C 62 24.86 -150.11 REMARK 500 ASP C 113 31.26 -142.74 REMARK 500 ASP C 141 -127.41 45.90 REMARK 500 ALA D 501 59.30 -145.71 REMARK 500 SER E 59 140.70 -174.49 REMARK 500 ASP E 62 16.45 -147.27 REMARK 500 ASP E 113 -3.93 -145.22 REMARK 500 LEU E 117 -124.33 47.40 REMARK 500 PHE E 140 58.76 -92.41 REMARK 500 ASP E 141 -121.83 46.85 REMARK 500 ALA F 501 63.13 -150.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1216 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 113 OD1 REMARK 620 2 HOH C2073 O 85.2 REMARK 620 3 HOH C2077 O 89.2 99.5 REMARK 620 4 HOH C2117 O 164.2 80.2 87.4 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1218 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ABU RELATED DB: PDB REMARK 900 COMPLEX OF D. MELANOGASTER EIF4E WITH THE 4E-BINDING PROTEIN MEXTLI REMARK 900 AND CAP ANALOG REMARK 900 RELATED ID: 5ABV RELATED DB: PDB REMARK 900 COMPLEX OF D. MELANOGASTER EIF4E WITH THE 4E-BINDING PROTEIN MEXTLI REMARK 900 RELATED ID: 5ABX RELATED DB: PDB REMARK 900 COMPLEX OF C. ELEGANS EIF4E-3 WITH THE 4E-BINDING PROTEIN MEXTLI REMARK 900 AND CAP ANALOG REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST FOUR RESIDUES OF CHAINS A, C, E REMAIN FROM THE REMARK 999 EXPRESSION TAG. REMARK 999 THE FIRST FOUR RESIDUES OF CHAINS B, D, F REMAIN FROM THE REMARK 999 EXPRESSION TAG. DBREF 5ABY A 30 215 UNP O61955 IF4E3_CAEEL 30 215 DBREF 5ABY B 471 507 UNP Q9XW13 Q9XW13_CAEEL 471 507 DBREF 5ABY C 30 215 UNP O61955 IF4E3_CAEEL 30 215 DBREF 5ABY D 471 507 UNP Q9XW13 Q9XW13_CAEEL 471 507 DBREF 5ABY E 30 215 UNP O61955 IF4E3_CAEEL 30 215 DBREF 5ABY F 471 507 UNP Q9XW13 Q9XW13_CAEEL 471 507 SEQADV 5ABY GLY A 26 UNP O61955 EXPRESSION TAG SEQADV 5ABY PRO A 27 UNP O61955 EXPRESSION TAG SEQADV 5ABY HIS A 28 UNP O61955 EXPRESSION TAG SEQADV 5ABY MET A 29 UNP O61955 EXPRESSION TAG SEQADV 5ABY GLY B 467 UNP Q9XW13 EXPRESSION TAG SEQADV 5ABY PRO B 468 UNP Q9XW13 EXPRESSION TAG SEQADV 5ABY HIS B 469 UNP Q9XW13 EXPRESSION TAG SEQADV 5ABY MET B 470 UNP Q9XW13 EXPRESSION TAG SEQADV 5ABY GLY C 26 UNP O61955 EXPRESSION TAG SEQADV 5ABY PRO C 27 UNP O61955 EXPRESSION TAG SEQADV 5ABY HIS C 28 UNP O61955 EXPRESSION TAG SEQADV 5ABY MET C 29 UNP O61955 EXPRESSION TAG SEQADV 5ABY GLY D 467 UNP Q9XW13 EXPRESSION TAG SEQADV 5ABY PRO D 468 UNP Q9XW13 EXPRESSION TAG SEQADV 5ABY HIS D 469 UNP Q9XW13 EXPRESSION TAG SEQADV 5ABY MET D 470 UNP Q9XW13 EXPRESSION TAG SEQADV 5ABY GLY E 26 UNP O61955 EXPRESSION TAG SEQADV 5ABY PRO E 27 UNP O61955 EXPRESSION TAG SEQADV 5ABY HIS E 28 UNP O61955 EXPRESSION TAG SEQADV 5ABY MET E 29 UNP O61955 EXPRESSION TAG SEQADV 5ABY GLY F 467 UNP Q9XW13 EXPRESSION TAG SEQADV 5ABY PRO F 468 UNP Q9XW13 EXPRESSION TAG SEQADV 5ABY HIS F 469 UNP Q9XW13 EXPRESSION TAG SEQADV 5ABY MET F 470 UNP Q9XW13 EXPRESSION TAG SEQRES 1 A 190 GLY PRO HIS MET THR ARG HIS PRO LEU GLN ASN ARG TRP SEQRES 2 A 190 ALA LEU TRP TYR LEU LYS ALA ASP ARG ASN LYS GLU TRP SEQRES 3 A 190 GLU ASP CYS LEU LYS MET VAL SER LEU PHE ASP THR VAL SEQRES 4 A 190 GLU ASP PHE TRP SER LEU TYR ASN HIS ILE GLN SER ALA SEQRES 5 A 190 GLY GLY LEU ASN TRP GLY SER ASP TYR TYR LEU PHE LYS SEQRES 6 A 190 GLU GLY ILE LYS PRO MET TRP GLU ASP VAL ASN ASN VAL SEQRES 7 A 190 GLN GLY GLY ARG TRP LEU VAL VAL VAL ASP LYS GLN LYS SEQRES 8 A 190 LEU GLN ARG ARG THR GLN LEU LEU ASP HIS TYR TRP LEU SEQRES 9 A 190 GLU LEU LEU MET ALA ILE VAL GLY GLU GLN PHE ASP GLU SEQRES 10 A 190 TYR GLY ASP TYR ILE CYS GLY ALA VAL VAL ASN VAL ARG SEQRES 11 A 190 GLN LYS GLY ASP LYS VAL SER LEU TRP THR ARG ASP ALA SEQRES 12 A 190 THR ARG ASP ASP VAL ASN LEU ARG ILE GLY GLN VAL LEU SEQRES 13 A 190 LYS GLN LYS LEU SER ILE PRO ASP THR GLU ILE LEU ARG SEQRES 14 A 190 TYR GLU VAL HIS LYS ASP SER SER ALA ARG THR SER SER SEQRES 15 A 190 THR VAL LYS PRO ARG ILE CYS LEU SEQRES 1 B 41 GLY PRO HIS MET ILE ARG TYR ASN ARG ASP THR LEU MET SEQRES 2 B 41 THR ALA ARG ASP THR LYS ARG ALA PRO ILE PRO ASP GLU SEQRES 3 B 41 MET LEU GLN GLU ILE ASN ARG VAL ALA PRO ASP ILE LEU SEQRES 4 B 41 ILE ALA SEQRES 1 C 190 GLY PRO HIS MET THR ARG HIS PRO LEU GLN ASN ARG TRP SEQRES 2 C 190 ALA LEU TRP TYR LEU LYS ALA ASP ARG ASN LYS GLU TRP SEQRES 3 C 190 GLU ASP CYS LEU LYS MET VAL SER LEU PHE ASP THR VAL SEQRES 4 C 190 GLU ASP PHE TRP SER LEU TYR ASN HIS ILE GLN SER ALA SEQRES 5 C 190 GLY GLY LEU ASN TRP GLY SER ASP TYR TYR LEU PHE LYS SEQRES 6 C 190 GLU GLY ILE LYS PRO MET TRP GLU ASP VAL ASN ASN VAL SEQRES 7 C 190 GLN GLY GLY ARG TRP LEU VAL VAL VAL ASP LYS GLN LYS SEQRES 8 C 190 LEU GLN ARG ARG THR GLN LEU LEU ASP HIS TYR TRP LEU SEQRES 9 C 190 GLU LEU LEU MET ALA ILE VAL GLY GLU GLN PHE ASP GLU SEQRES 10 C 190 TYR GLY ASP TYR ILE CYS GLY ALA VAL VAL ASN VAL ARG SEQRES 11 C 190 GLN LYS GLY ASP LYS VAL SER LEU TRP THR ARG ASP ALA SEQRES 12 C 190 THR ARG ASP ASP VAL ASN LEU ARG ILE GLY GLN VAL LEU SEQRES 13 C 190 LYS GLN LYS LEU SER ILE PRO ASP THR GLU ILE LEU ARG SEQRES 14 C 190 TYR GLU VAL HIS LYS ASP SER SER ALA ARG THR SER SER SEQRES 15 C 190 THR VAL LYS PRO ARG ILE CYS LEU SEQRES 1 D 41 GLY PRO HIS MET ILE ARG TYR ASN ARG ASP THR LEU MET SEQRES 2 D 41 THR ALA ARG ASP THR LYS ARG ALA PRO ILE PRO ASP GLU SEQRES 3 D 41 MET LEU GLN GLU ILE ASN ARG VAL ALA PRO ASP ILE LEU SEQRES 4 D 41 ILE ALA SEQRES 1 E 190 GLY PRO HIS MET THR ARG HIS PRO LEU GLN ASN ARG TRP SEQRES 2 E 190 ALA LEU TRP TYR LEU LYS ALA ASP ARG ASN LYS GLU TRP SEQRES 3 E 190 GLU ASP CYS LEU LYS MET VAL SER LEU PHE ASP THR VAL SEQRES 4 E 190 GLU ASP PHE TRP SER LEU TYR ASN HIS ILE GLN SER ALA SEQRES 5 E 190 GLY GLY LEU ASN TRP GLY SER ASP TYR TYR LEU PHE LYS SEQRES 6 E 190 GLU GLY ILE LYS PRO MET TRP GLU ASP VAL ASN ASN VAL SEQRES 7 E 190 GLN GLY GLY ARG TRP LEU VAL VAL VAL ASP LYS GLN LYS SEQRES 8 E 190 LEU GLN ARG ARG THR GLN LEU LEU ASP HIS TYR TRP LEU SEQRES 9 E 190 GLU LEU LEU MET ALA ILE VAL GLY GLU GLN PHE ASP GLU SEQRES 10 E 190 TYR GLY ASP TYR ILE CYS GLY ALA VAL VAL ASN VAL ARG SEQRES 11 E 190 GLN LYS GLY ASP LYS VAL SER LEU TRP THR ARG ASP ALA SEQRES 12 E 190 THR ARG ASP ASP VAL ASN LEU ARG ILE GLY GLN VAL LEU SEQRES 13 E 190 LYS GLN LYS LEU SER ILE PRO ASP THR GLU ILE LEU ARG SEQRES 14 E 190 TYR GLU VAL HIS LYS ASP SER SER ALA ARG THR SER SER SEQRES 15 E 190 THR VAL LYS PRO ARG ILE CYS LEU SEQRES 1 F 41 GLY PRO HIS MET ILE ARG TYR ASN ARG ASP THR LEU MET SEQRES 2 F 41 THR ALA ARG ASP THR LYS ARG ALA PRO ILE PRO ASP GLU SEQRES 3 F 41 MET LEU GLN GLU ILE ASN ARG VAL ALA PRO ASP ILE LEU SEQRES 4 F 41 ILE ALA HET GOL A1216 14 HET MG C1216 1 HET GOL C1217 14 HET MG C1218 1 HET GOL E1216 14 HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL 3(C3 H8 O3) FORMUL 8 MG 2(MG 2+) FORMUL 12 HOH *434(H2 O) HELIX 1 1 VAL A 64 HIS A 73 1 10 HELIX 2 2 LEU A 117 VAL A 136 1 20 HELIX 3 3 ASP A 171 LYS A 184 1 14 HELIX 4 4 HIS A 198 SER A 201 1 4 HELIX 5 5 ARG B 475 ASP B 483 1 9 HELIX 6 6 ASP B 491 VAL B 500 1 10 HELIX 7 7 TRP C 51 CYS C 54 1 4 HELIX 8 8 VAL C 64 HIS C 73 1 10 HELIX 9 9 LEU C 117 VAL C 136 1 20 HELIX 10 10 ASP C 171 LYS C 184 1 14 HELIX 11 11 ARG D 475 ASP D 483 1 9 HELIX 12 12 ASP D 491 VAL D 500 1 10 HELIX 13 13 TRP E 51 CYS E 54 1 4 HELIX 14 14 VAL E 64 HIS E 73 1 10 HELIX 15 15 LEU E 117 VAL E 136 1 20 HELIX 16 16 ASP E 171 LEU E 185 1 15 HELIX 17 17 ARG F 475 ASP F 483 1 9 HELIX 18 18 ASP F 491 VAL F 500 1 10 SHEET 1 AA 8 LEU A 55 THR A 63 0 SHEET 2 AA 8 PRO A 33 LEU A 43 -1 N LEU A 34 O ASP A 62 SHEET 3 AA 8 ASP A 85 LYS A 90 -1 O ASP A 85 N LEU A 43 SHEET 4 AA 8 ILE A 147 ASN A 153 -1 O CYS A 148 N LYS A 90 SHEET 5 AA 8 ASP A 159 THR A 165 -1 O LYS A 160 N ASN A 153 SHEET 6 AA 8 GLY A 106 VAL A 112 -1 O GLY A 106 N THR A 165 SHEET 7 AA 8 LEU A 193 VAL A 197 -1 O ARG A 194 N LEU A 109 SHEET 8 AA 8 ILE A 213 LEU A 215 -1 O ILE A 213 N TYR A 195 SHEET 1 CA 8 LEU C 55 THR C 63 0 SHEET 2 CA 8 PRO C 33 LEU C 43 -1 N LEU C 34 O ASP C 62 SHEET 3 CA 8 ASP C 85 LYS C 90 -1 O ASP C 85 N LEU C 43 SHEET 4 CA 8 ILE C 147 ASN C 153 -1 O CYS C 148 N LYS C 90 SHEET 5 CA 8 ASP C 159 THR C 165 -1 O LYS C 160 N ASN C 153 SHEET 6 CA 8 GLY C 106 VAL C 112 -1 O GLY C 106 N THR C 165 SHEET 7 CA 8 LEU C 193 VAL C 197 -1 O ARG C 194 N LEU C 109 SHEET 8 CA 8 ILE C 213 LEU C 215 -1 O ILE C 213 N TYR C 195 SHEET 1 EA 8 LEU E 55 THR E 63 0 SHEET 2 EA 8 PRO E 33 LEU E 43 -1 N LEU E 34 O ASP E 62 SHEET 3 EA 8 ASP E 85 LYS E 90 -1 O ASP E 85 N LEU E 43 SHEET 4 EA 8 ILE E 147 ASN E 153 -1 O CYS E 148 N LYS E 90 SHEET 5 EA 8 ASP E 159 THR E 165 -1 O LYS E 160 N ASN E 153 SHEET 6 EA 8 GLY E 106 VAL E 112 -1 O GLY E 106 N THR E 165 SHEET 7 EA 8 LEU E 193 VAL E 197 -1 O ARG E 194 N LEU E 109 SHEET 8 EA 8 ILE E 213 LEU E 215 -1 O ILE E 213 N TYR E 195 LINK OD1 ASP C 113 MG MG C1216 1555 1555 2.07 LINK MG MG C1216 O HOH C2073 1555 1555 2.09 LINK MG MG C1216 O HOH C2077 1555 1555 2.05 LINK MG MG C1216 O HOH C2117 1555 1555 2.04 SITE 1 AC1 4 ASP C 113 HOH C2073 HOH C2077 HOH C2117 SITE 1 AC2 4 ARG A 107 HIS A 198 HOH A2064 HOH A2076 SITE 1 AC3 7 ASP C 85 TYR C 87 PRO C 95 ASN C 153 SITE 2 AC3 7 TRP C 164 HOH C2062 HOH C2070 SITE 1 AC4 8 TRP E 51 TYR E 87 PRO E 95 MET E 96 SITE 2 AC4 8 ASN E 153 HOH E2049 HOH E2055 HOH E2064 SITE 1 AC5 1 GLU C 98 CRYST1 91.240 157.580 55.180 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018123 0.00000