HEADER TRANSFERASE 26-DEC-14 5AEL TITLE T. BRUCEI FARNESYL DIPHOSPHATE SYNTHASE COMPLEXED WITH BISPHOSPHONATE TITLE 2 BPH-597 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.YANG,E.OLDFIELD,J.H.NO REVDAT 5 10-JAN-24 5AEL 1 REMARK LINK REVDAT 4 06-FEB-19 5AEL 1 REMARK REVDAT 3 30-JAN-19 5AEL 1 REMARK REVDAT 2 02-DEC-15 5AEL 1 JRNL REVDAT 1 28-OCT-15 5AEL 0 JRNL AUTH G.YANG,W.ZHU,K.KIM,S.Y.BYUN,G.CHOI,K.WANG,J.S.CHA,H.CHO, JRNL AUTH 2 E.OLDFIELD,J.H.NO JRNL TITL INHIBITION OF TRYPANOSOMA BRUCEI CELL GROWTH BY LIPOPHILIC JRNL TITL 2 BISPHOSPHONATES: AN IN VITRO AND IN VIVO INVESTIGATION. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 59 7530 2015 JRNL REFN ISSN 0066-4804 JRNL PMID 26392508 JRNL DOI 10.1128/AAC.01873-15 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.CAO,C.K.CHEN,R.GUO,A.H.WANG,E.OLDFIELD REMARK 1 TITL STRUCTURES OF A POTENT PHENYLALKYL BISPHOSPHONATE INHIBITOR REMARK 1 TITL 2 BOUND TO FARNESYL AND GERANYLGERANYL DIPHOSPHATE SYNTHASES. REMARK 1 REF PROTEINS V. 73 431 2008 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 18442135 REMARK 1 DOI 10.1002/PROT.22066 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 25663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1362 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1506 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.808 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.819 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5870 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5532 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7944 ; 1.549 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12728 ; 0.826 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 710 ; 5.397 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 270 ;40.994 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1030 ;18.440 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.939 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 876 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6548 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1334 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2852 ; 3.414 ; 4.920 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2851 ; 3.414 ; 4.918 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3558 ; 5.090 ; 7.359 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3018 ; 4.304 ; 5.370 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5AEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1290062642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25663 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 85.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 16.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 2P1C REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% MPD, 0.1 AMMONIUM ACETATE, PH 5.75, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.91750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.91750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 64 REMARK 465 SER A 65 REMARK 465 PRO A 66 REMARK 465 ASN A 67 REMARK 465 ASN A 68 REMARK 465 ASN A 69 REMARK 465 GLY A 70 REMARK 465 GLU A 71 REMARK 465 GLU A 72 REMARK 465 ASP A 73 REMARK 465 LEU B 64 REMARK 465 SER B 65 REMARK 465 PRO B 66 REMARK 465 ASN B 67 REMARK 465 ASN B 68 REMARK 465 ASN B 69 REMARK 465 GLY B 70 REMARK 465 GLU B 71 REMARK 465 GLU B 72 REMARK 465 ASP B 73 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 123 CG OD1 OD2 REMARK 470 ARG B 266 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 348 O HOH A 2075 1.99 REMARK 500 O HOH B 2076 O HOH B 2077 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 255 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 348 57.24 -147.88 REMARK 500 THR B 213 -32.29 -134.39 REMARK 500 SER B 348 36.69 -140.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3108 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH A3109 DISTANCE = 9.78 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1369 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 75.2 REMARK 620 3 QAF A1368 O17 123.7 153.5 REMARK 620 4 QAF A1368 O20 80.6 66.6 96.2 REMARK 620 5 HOH A2024 O 71.1 87.3 115.3 145.7 REMARK 620 6 HOH A2028 O 164.1 89.0 71.9 94.9 106.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1371 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 66.6 REMARK 620 3 QAF A1368 O20 82.2 63.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1370 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 255 OD2 REMARK 620 2 QAF A1368 O16 65.0 REMARK 620 3 QAF A1368 O17 110.5 50.5 REMARK 620 4 QAF A1368 O19 78.8 82.2 70.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1369 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 103 OD2 REMARK 620 2 ASP B 107 OD2 76.8 REMARK 620 3 QAF B1368 O16 97.3 164.4 REMARK 620 4 QAF B1368 O21 75.9 59.1 105.6 REMARK 620 5 HOH B2079 O 160.9 109.5 71.7 91.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1371 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 103 OD1 REMARK 620 2 ASP B 107 OD1 82.5 REMARK 620 3 ASP B 107 OD2 75.6 49.1 REMARK 620 4 QAF B1368 O21 82.6 119.6 70.5 REMARK 620 5 HOH B2034 O 96.5 53.4 102.4 172.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1370 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 255 OD2 REMARK 620 2 QAF B1368 O20 105.4 REMARK 620 3 QAF B1368 O15 78.2 78.7 REMARK 620 4 HOH B2079 O 162.1 63.2 85.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QAF B 1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QAF A 1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1371 DBREF 5AEL A 1 367 UNP Q86C09 Q86C09_9TRYP 1 367 DBREF 5AEL B 1 367 UNP Q86C09 Q86C09_9TRYP 1 367 SEQRES 1 A 367 MET PRO MET GLN MET PHE MET GLN VAL TYR ASP GLU ILE SEQRES 2 A 367 GLN MET PHE LEU LEU GLU GLU LEU GLU LEU LYS PHE ASP SEQRES 3 A 367 MET ASP PRO ASN ARG VAL ARG TYR LEU ARG LYS MET MET SEQRES 4 A 367 ASP THR THR CYS LEU GLY GLY LYS TYR ASN ARG GLY LEU SEQRES 5 A 367 THR VAL ILE ASP VAL ALA GLU SER LEU LEU SER LEU SER SEQRES 6 A 367 PRO ASN ASN ASN GLY GLU GLU ASP ASP GLY ALA ARG ARG SEQRES 7 A 367 LYS ARG VAL LEU HIS ASP ALA CYS VAL CYS GLY TRP MET SEQRES 8 A 367 ILE GLU PHE LEU GLN ALA HIS TYR LEU VAL GLU ASP ASP SEQRES 9 A 367 ILE MET ASP ASN SER VAL THR ARG ARG GLY LYS PRO CYS SEQRES 10 A 367 TRP TYR ARG HIS PRO ASP VAL THR VAL GLN CYS ALA ILE SEQRES 11 A 367 ASN ASP GLY LEU LEU LEU LYS SER TRP THR HIS MET MET SEQRES 12 A 367 ALA MET HIS PHE PHE ALA ASP ARG PRO PHE LEU GLN ASP SEQRES 13 A 367 LEU LEU CYS ARG PHE ASN ARG VAL ASP TYR THR THR ALA SEQRES 14 A 367 VAL GLY GLN LEU TYR ASP VAL THR SER MET PHE ASP SER SEQRES 15 A 367 ASN LYS LEU ASP PRO ASP VAL SER GLN PRO THR THR THR SEQRES 16 A 367 ASP PHE ALA GLU PHE THR LEU SER ASN TYR LYS ARG ILE SEQRES 17 A 367 VAL LYS TYR LYS THR ALA TYR TYR THR TYR LEU LEU PRO SEQRES 18 A 367 LEU VAL MET GLY LEU ILE VAL SER GLU ALA LEU PRO THR SEQRES 19 A 367 VAL ASP MET GLY VAL THR GLU GLU LEU ALA MET LEU MET SEQRES 20 A 367 GLY GLU TYR PHE GLN VAL GLN ASP ASP VAL MET ASP CYS SEQRES 21 A 367 PHE THR PRO PRO GLU ARG LEU GLY LYS VAL GLY THR ASP SEQRES 22 A 367 ILE GLN ASP ALA LYS CYS SER TRP LEU ALA VAL THR PHE SEQRES 23 A 367 LEU ALA LYS ALA SER SER ALA GLN VAL ALA GLU PHE LYS SEQRES 24 A 367 ALA ASN TYR GLY SER GLY ASP SER GLU LYS VAL ALA THR SEQRES 25 A 367 VAL ARG ARG LEU TYR GLU GLU ALA ASP LEU GLN GLY ASP SEQRES 26 A 367 TYR VAL ALA TYR GLU ALA ALA VAL ALA GLU GLN VAL LYS SEQRES 27 A 367 GLU LEU ILE GLU LYS LEU ARG LEU CYS SER PRO GLY PHE SEQRES 28 A 367 ALA ALA SER VAL GLU THR LEU TRP GLY LYS THR TYR LYS SEQRES 29 A 367 ARG GLN LYS SEQRES 1 B 367 MET PRO MET GLN MET PHE MET GLN VAL TYR ASP GLU ILE SEQRES 2 B 367 GLN MET PHE LEU LEU GLU GLU LEU GLU LEU LYS PHE ASP SEQRES 3 B 367 MET ASP PRO ASN ARG VAL ARG TYR LEU ARG LYS MET MET SEQRES 4 B 367 ASP THR THR CYS LEU GLY GLY LYS TYR ASN ARG GLY LEU SEQRES 5 B 367 THR VAL ILE ASP VAL ALA GLU SER LEU LEU SER LEU SER SEQRES 6 B 367 PRO ASN ASN ASN GLY GLU GLU ASP ASP GLY ALA ARG ARG SEQRES 7 B 367 LYS ARG VAL LEU HIS ASP ALA CYS VAL CYS GLY TRP MET SEQRES 8 B 367 ILE GLU PHE LEU GLN ALA HIS TYR LEU VAL GLU ASP ASP SEQRES 9 B 367 ILE MET ASP ASN SER VAL THR ARG ARG GLY LYS PRO CYS SEQRES 10 B 367 TRP TYR ARG HIS PRO ASP VAL THR VAL GLN CYS ALA ILE SEQRES 11 B 367 ASN ASP GLY LEU LEU LEU LYS SER TRP THR HIS MET MET SEQRES 12 B 367 ALA MET HIS PHE PHE ALA ASP ARG PRO PHE LEU GLN ASP SEQRES 13 B 367 LEU LEU CYS ARG PHE ASN ARG VAL ASP TYR THR THR ALA SEQRES 14 B 367 VAL GLY GLN LEU TYR ASP VAL THR SER MET PHE ASP SER SEQRES 15 B 367 ASN LYS LEU ASP PRO ASP VAL SER GLN PRO THR THR THR SEQRES 16 B 367 ASP PHE ALA GLU PHE THR LEU SER ASN TYR LYS ARG ILE SEQRES 17 B 367 VAL LYS TYR LYS THR ALA TYR TYR THR TYR LEU LEU PRO SEQRES 18 B 367 LEU VAL MET GLY LEU ILE VAL SER GLU ALA LEU PRO THR SEQRES 19 B 367 VAL ASP MET GLY VAL THR GLU GLU LEU ALA MET LEU MET SEQRES 20 B 367 GLY GLU TYR PHE GLN VAL GLN ASP ASP VAL MET ASP CYS SEQRES 21 B 367 PHE THR PRO PRO GLU ARG LEU GLY LYS VAL GLY THR ASP SEQRES 22 B 367 ILE GLN ASP ALA LYS CYS SER TRP LEU ALA VAL THR PHE SEQRES 23 B 367 LEU ALA LYS ALA SER SER ALA GLN VAL ALA GLU PHE LYS SEQRES 24 B 367 ALA ASN TYR GLY SER GLY ASP SER GLU LYS VAL ALA THR SEQRES 25 B 367 VAL ARG ARG LEU TYR GLU GLU ALA ASP LEU GLN GLY ASP SEQRES 26 B 367 TYR VAL ALA TYR GLU ALA ALA VAL ALA GLU GLN VAL LYS SEQRES 27 B 367 GLU LEU ILE GLU LYS LEU ARG LEU CYS SER PRO GLY PHE SEQRES 28 B 367 ALA ALA SER VAL GLU THR LEU TRP GLY LYS THR TYR LYS SEQRES 29 B 367 ARG GLN LYS HET QAF A1368 22 HET MG A1369 1 HET MG A1370 1 HET MG A1371 1 HET QAF B1368 22 HET MG B1369 1 HET MG B1370 1 HET MG B1371 1 HETNAM QAF {2-[3-(HEX-1-YN-1-YL)PYRIDINIUM-1-YL]ETHANE-1,1- HETNAM 2 QAF DIYL}BIS(PHOSPHONATE) HETNAM MG MAGNESIUM ION FORMUL 3 QAF 2(C13 H16 N O6 P2 3-) FORMUL 4 MG 6(MG 2+) FORMUL 11 HOH *220(H2 O) HELIX 1 1 MET A 1 ASP A 26 1 26 HELIX 2 2 ASP A 28 LEU A 44 1 17 HELIX 3 3 TYR A 48 LEU A 61 1 14 HELIX 4 4 GLY A 75 ASP A 107 1 33 HELIX 5 5 TRP A 118 HIS A 121 5 4 HELIX 6 6 THR A 125 PHE A 148 1 24 HELIX 7 7 PHE A 153 SER A 178 1 26 HELIX 8 8 ASP A 181 LEU A 185 5 5 HELIX 9 9 THR A 201 THR A 213 1 13 HELIX 10 10 THR A 213 TYR A 218 1 6 HELIX 11 11 TYR A 218 SER A 229 1 12 HELIX 12 12 ALA A 231 VAL A 235 5 5 HELIX 13 13 ASP A 236 THR A 262 1 27 HELIX 14 14 PRO A 263 GLY A 268 1 6 HELIX 15 15 SER A 280 ALA A 290 1 11 HELIX 16 16 SER A 291 TYR A 302 1 12 HELIX 17 17 ASP A 306 ALA A 320 1 15 HELIX 18 18 ASP A 321 SER A 348 1 28 HELIX 19 19 SER A 348 TYR A 363 1 16 HELIX 20 20 MET B 1 PHE B 25 1 25 HELIX 21 21 ASP B 28 LEU B 44 1 17 HELIX 22 22 TYR B 48 LEU B 62 1 15 HELIX 23 23 ASP B 74 ASP B 107 1 34 HELIX 24 24 TRP B 118 HIS B 121 5 4 HELIX 25 25 THR B 125 ALA B 149 1 25 HELIX 26 26 PHE B 153 THR B 177 1 25 HELIX 27 27 ASP B 181 LEU B 185 5 5 HELIX 28 28 THR B 201 THR B 213 1 13 HELIX 29 29 THR B 213 TYR B 218 1 6 HELIX 30 30 TYR B 218 SER B 229 1 12 HELIX 31 31 ALA B 231 VAL B 235 5 5 HELIX 32 32 ASP B 236 THR B 262 1 27 HELIX 33 33 PRO B 263 GLY B 268 1 6 HELIX 34 34 SER B 280 ALA B 290 1 11 HELIX 35 35 SER B 291 TYR B 302 1 12 HELIX 36 36 ASP B 306 ALA B 320 1 15 HELIX 37 37 ASP B 321 LEU B 346 1 26 HELIX 38 38 SER B 348 TYR B 363 1 16 SHEET 1 AA 2 THR A 111 ARG A 112 0 SHEET 2 AA 2 LYS A 115 PRO A 116 -1 O LYS A 115 N ARG A 112 SHEET 1 BA 2 THR B 111 ARG B 112 0 SHEET 2 BA 2 LYS B 115 PRO B 116 -1 O LYS B 115 N ARG B 112 LINK OD2 ASP A 103 MG MG A1369 1555 1555 2.10 LINK OD1 ASP A 103 MG MG A1371 1555 1555 2.17 LINK OD2 ASP A 107 MG MG A1369 1555 1555 2.23 LINK OD2 ASP A 107 MG MG A1371 1555 1555 2.51 LINK OD2 ASP A 255 MG MG A1370 1555 1555 2.33 LINK O17 QAF A1368 MG MG A1369 1555 1555 2.14 LINK O20 QAF A1368 MG MG A1369 1555 1555 2.30 LINK O16 QAF A1368 MG MG A1370 1555 1555 2.92 LINK O17 QAF A1368 MG MG A1370 1555 1555 2.88 LINK O19 QAF A1368 MG MG A1370 1555 1555 2.16 LINK O20 QAF A1368 MG MG A1371 1555 1555 2.15 LINK MG MG A1369 O HOH A2024 1555 1555 2.33 LINK MG MG A1369 O HOH A2028 1555 1555 2.37 LINK OD2 ASP B 103 MG MG B1369 1555 1555 2.20 LINK OD1 ASP B 103 MG MG B1371 1555 1555 2.15 LINK OD2 ASP B 107 MG MG B1369 1555 1555 2.09 LINK OD1 ASP B 107 MG MG B1371 1555 1555 2.87 LINK OD2 ASP B 107 MG MG B1371 1555 1555 2.09 LINK OD2 ASP B 255 MG MG B1370 1555 1555 2.16 LINK O16 QAF B1368 MG MG B1369 1555 1555 2.24 LINK O21 QAF B1368 MG MG B1369 1555 1555 2.47 LINK O20 QAF B1368 MG MG B1370 1555 1555 2.15 LINK O15 QAF B1368 MG MG B1370 1555 1555 2.33 LINK O21 QAF B1368 MG MG B1371 1555 1555 1.82 LINK MG MG B1369 O HOH B2079 1555 1555 2.94 LINK MG MG B1370 O HOH B2079 1555 1555 2.59 LINK MG MG B1371 O HOH B2034 1555 1555 1.97 SITE 1 AC1 17 ASN A 131 LEU A 134 TYR B 99 LEU B 100 SITE 2 AC1 17 ASP B 103 ASP B 107 ARG B 112 ALA B 169 SITE 3 AC1 17 GLN B 172 LYS B 212 THR B 213 ASP B 255 SITE 4 AC1 17 LYS B 269 MG B1369 MG B1370 MG B1371 SITE 5 AC1 17 HOH B2079 SITE 1 AC2 17 TYR A 99 ASP A 103 ASP A 107 ARG A 112 SITE 2 AC2 17 ALA A 169 GLN A 172 LYS A 212 THR A 213 SITE 3 AC2 17 ASP A 255 LYS A 269 MG A1369 MG A1370 SITE 4 AC2 17 MG A1371 HOH A2028 HOH A2050 ASN B 131 SITE 5 AC2 17 LEU B 134 SITE 1 AC3 5 ASP B 103 ASP B 107 QAF B1368 MG B1371 SITE 2 AC3 5 HOH B2079 SITE 1 AC4 3 ASP B 255 QAF B1368 HOH B2079 SITE 1 AC5 7 ASP B 103 ASP B 107 GLN B 172 ASP B 175 SITE 2 AC5 7 QAF B1368 MG B1369 HOH B2034 SITE 1 AC6 5 ASP A 103 ASP A 107 QAF A1368 HOH A2024 SITE 2 AC6 5 HOH A2028 SITE 1 AC7 3 ASP A 255 ASP A 259 QAF A1368 SITE 1 AC8 5 ASP A 103 ASP A 107 GLN A 172 ASP A 175 SITE 2 AC8 5 QAF A1368 CRYST1 133.835 118.250 62.424 90.00 112.39 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007472 0.000000 0.003078 0.00000 SCALE2 0.000000 0.008457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017326 0.00000