HEADER TRANSCRIPTION 05-JAN-15 5AEM TITLE STRUCTURE OF T131 N-TERMINAL TPR ARRAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR TAU 131 KDA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL TPR ARRAY, RESIDUES 123-566; COMPND 5 SYNONYM: TFIIIC 131 KDA SUBUNIT, TRANSCRIPTION FACTOR C SUBUNIT 4, COMPND 6 TAU131; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 ATCC: 204508; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR PRARE; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS TRANSCRIPTION, RNA POLYMERASE III EXPDTA X-RAY DIFFRACTION AUTHOR N.M.I.TAYLOR,C.W.MULLER REVDAT 2 14-FEB-18 5AEM 1 JRNL ATOM REVDAT 1 24-JUN-15 5AEM 0 JRNL AUTH G.MALE,A.VON APPEN,S.GLATT,N.M.TAYLOR,M.CRISTOVAO, JRNL AUTH 2 H.GROETSCH,M.BECK,C.W.MULLER JRNL TITL ARCHITECTURE OF TFIIIC AND ITS ROLE IN RNA POLYMERASE III JRNL TITL 2 PRE-INITIATION COMPLEX ASSEMBLY. JRNL REF NAT COMMUN V. 6 7387 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26060179 JRNL DOI 10.1038/NCOMMS8387 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.3559 - 7.3230 0.99 2748 143 0.1947 0.2302 REMARK 3 2 7.3230 - 5.8132 1.00 2737 149 0.2228 0.2549 REMARK 3 3 5.8132 - 5.0786 1.00 2809 127 0.2148 0.2055 REMARK 3 4 5.0786 - 4.6143 1.00 2758 137 0.1865 0.2239 REMARK 3 5 4.6143 - 4.2836 1.00 2787 119 0.1797 0.2539 REMARK 3 6 4.2836 - 4.0311 1.00 2735 150 0.2035 0.2620 REMARK 3 7 4.0311 - 3.8292 1.00 2770 173 0.2247 0.2743 REMARK 3 8 3.8292 - 3.6625 1.00 2720 149 0.2324 0.2436 REMARK 3 9 3.6625 - 3.5215 1.00 2717 173 0.2735 0.2894 REMARK 3 10 3.5215 - 3.4000 0.98 2679 148 0.3175 0.3295 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 134.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 158.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3454 REMARK 3 ANGLE : 1.076 4676 REMARK 3 CHIRALITY : 0.068 508 REMARK 3 PLANARITY : 0.004 600 REMARK 3 DIHEDRAL : 14.094 1277 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1290062531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14895 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 74.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH 8.9 0.85 M MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.37000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.05500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.68500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 120 REMARK 465 ALA A 121 REMARK 465 MET A 122 REMARK 465 VAL A 123 REMARK 465 LEU A 124 REMARK 465 ASP A 125 REMARK 465 PRO A 126 REMARK 465 GLU A 127 REMARK 465 VAL A 128 REMARK 465 ALA A 129 REMARK 465 GLN A 130 REMARK 465 ASP A 313 REMARK 465 GLU A 314 REMARK 465 GLU A 315 REMARK 465 SER A 316 REMARK 465 ALA A 317 REMARK 465 ALA A 318 REMARK 465 GLU A 319 REMARK 465 GLY A 320 REMARK 465 GLU A 321 REMARK 465 ASP A 322 REMARK 465 ALA A 323 REMARK 465 ASP A 324 REMARK 465 GLU A 325 REMARK 465 LYS A 326 REMARK 465 GLU A 327 REMARK 465 PRO A 328 REMARK 465 LEU A 329 REMARK 465 GLU A 330 REMARK 465 GLN A 331 REMARK 465 ASP A 332 REMARK 465 GLU A 333 REMARK 465 ASP A 334 REMARK 465 ARG A 335 REMARK 465 GLN A 336 REMARK 465 VAL A 562 REMARK 465 VAL A 563 REMARK 465 GLU A 564 REMARK 465 MET A 565 REMARK 465 ARG A 566 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 426 162.22 178.68 REMARK 500 ARG A 548 -64.90 -92.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 ADDITIONAL GAM RESIDUES AT THE N-TERMINUS DBREF 5AEM A 123 566 UNP P33339 TFC4_YEAST 123 566 SEQADV 5AEM GLY A 120 UNP P33339 EXPRESSION TAG SEQADV 5AEM ALA A 121 UNP P33339 EXPRESSION TAG SEQADV 5AEM MET A 122 UNP P33339 EXPRESSION TAG SEQRES 1 A 447 GLY ALA MET VAL LEU ASP PRO GLU VAL ALA GLN LEU LEU SEQRES 2 A 447 SER GLN ALA ASN GLU ALA PHE VAL ARG ASN ASP LEU GLN SEQRES 3 A 447 VAL ALA GLU ARG LEU PHE ASN GLU VAL ILE LYS LYS ASP SEQRES 4 A 447 ALA ARG ASN PHE ALA ALA TYR GLU THR LEU GLY ASP ILE SEQRES 5 A 447 TYR GLN LEU GLN GLY ARG LEU ASN ASP CYS CYS ASN SER SEQRES 6 A 447 TRP PHE LEU ALA ALA HIS LEU ASN ALA SER ASP TRP GLU SEQRES 7 A 447 PHE TRP LYS ILE VAL ALA ILE LEU SER ALA ASP LEU ASP SEQRES 8 A 447 HIS VAL ARG GLN ALA ILE TYR CYS PHE SER ARG VAL ILE SEQRES 9 A 447 SER LEU ASN PRO MET GLU TRP GLU SER ILE TYR ARG ARG SEQRES 10 A 447 SER MET LEU TYR LYS LYS THR GLY GLN LEU ALA ARG ALA SEQRES 11 A 447 LEU ASP GLY PHE GLN ARG LEU TYR MET TYR ASN PRO TYR SEQRES 12 A 447 ASP ALA ASN ILE LEU ARG GLU LEU ALA ILE LEU TYR VAL SEQRES 13 A 447 ASP TYR ASP ARG ILE GLU ASP SER ILE GLU LEU TYR MET SEQRES 14 A 447 LYS VAL PHE ASN ALA ASN VAL GLU ARG ARG GLU ALA ILE SEQRES 15 A 447 LEU ALA ALA LEU GLU ASN ALA LEU ASP SER SER ASP GLU SEQRES 16 A 447 GLU SER ALA ALA GLU GLY GLU ASP ALA ASP GLU LYS GLU SEQRES 17 A 447 PRO LEU GLU GLN ASP GLU ASP ARG GLN MET PHE PRO ASP SEQRES 18 A 447 ILE ASN TRP LYS LYS ILE ASP ALA LYS TYR LYS CYS ILE SEQRES 19 A 447 PRO PHE ASP TRP SER SER LEU ASN ILE LEU ALA GLU LEU SEQRES 20 A 447 PHE LEU LYS LEU ALA VAL SER GLU VAL ASP GLY ILE LYS SEQRES 21 A 447 THR ILE LYS LYS CYS ALA ARG TRP ILE GLN ARG ARG GLU SEQRES 22 A 447 SER GLN THR PHE TRP ASP HIS VAL PRO ASP ASP SER GLU SEQRES 23 A 447 PHE ASP ASN ARG ARG PHE LYS ASN SER THR PHE ASP SER SEQRES 24 A 447 LEU LEU ALA ALA GLU LYS GLU LYS SER TYR ASN ILE PRO SEQRES 25 A 447 ILE ASP ILE ARG VAL ARG LEU GLY LEU LEU ARG LEU ASN SEQRES 26 A 447 THR ASP ASN LEU VAL GLU ALA LEU ASN HIS PHE GLN CYS SEQRES 27 A 447 LEU TYR ASP GLU THR PHE SER ASP VAL ALA ASP LEU TYR SEQRES 28 A 447 PHE GLU ALA ALA THR ALA LEU THR ARG ALA GLU LYS TYR SEQRES 29 A 447 LYS GLU ALA ILE ASP PHE PHE THR PRO LEU LEU SER LEU SEQRES 30 A 447 GLU GLU TRP ARG THR THR ASP VAL PHE LYS PRO LEU ALA SEQRES 31 A 447 ARG CYS TYR LYS GLU ILE GLU SER TYR GLU THR ALA LYS SEQRES 32 A 447 GLU PHE TYR GLU LEU ALA ILE LYS SER GLU PRO ASP ASP SEQRES 33 A 447 LEU ASP ILE ARG VAL SER LEU ALA GLU VAL TYR TYR ARG SEQRES 34 A 447 LEU ASN ASP PRO GLU THR PHE LYS HIS MET LEU VAL ASP SEQRES 35 A 447 VAL VAL GLU MET ARG HELIX 1 1 LEU A 131 ASN A 142 1 12 HELIX 2 2 LEU A 144 ILE A 155 1 12 HELIX 3 3 ASN A 161 GLY A 176 1 16 HELIX 4 4 ARG A 177 ASN A 192 1 16 HELIX 5 5 ASP A 195 LEU A 209 1 15 HELIX 6 6 HIS A 211 ASN A 226 1 16 HELIX 7 7 GLU A 229 THR A 243 1 15 HELIX 8 8 GLN A 245 ASN A 260 1 16 HELIX 9 9 ASP A 263 TYR A 277 1 15 HELIX 10 10 ARG A 279 SER A 312 1 34 HELIX 11 11 ASN A 342 TYR A 350 1 9 HELIX 12 12 ASP A 356 ALA A 371 1 16 HELIX 13 13 SER A 373 ILE A 388 1 16 HELIX 14 14 GLN A 389 ARG A 391 5 3 HELIX 15 15 THR A 395 VAL A 400 5 6 HELIX 16 16 ASP A 407 LYS A 412 5 6 HELIX 17 17 ASN A 413 LEU A 419 1 7 HELIX 18 18 LEU A 420 GLU A 425 1 6 HELIX 19 19 PRO A 431 ASN A 444 1 14 HELIX 20 20 ASN A 447 GLN A 456 1 10 HELIX 21 21 CYS A 457 GLU A 461 5 5 HELIX 22 22 VAL A 466 ALA A 480 1 15 HELIX 23 23 LYS A 482 THR A 491 1 10 HELIX 24 24 PRO A 492 SER A 495 5 4 HELIX 25 25 LEU A 496 ARG A 500 5 5 HELIX 26 26 THR A 501 ILE A 515 1 15 HELIX 27 27 SER A 517 GLU A 532 1 16 HELIX 28 28 ASP A 535 ARG A 548 1 14 HELIX 29 29 THR A 554 ASP A 561 1 8 CRYST1 105.130 105.130 98.740 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009512 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010128 0.00000