HEADER MEMBRANE PROTEIN 12-JAN-15 5AEZ TITLE CRYSTAL STRUCTURE OF CANDIDA ALBICANS MEP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEP2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS; SOURCE 3 ORGANISM_TAXID: 5476; SOURCE 4 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: W303 DELTA PEP4 KEYWDS MEMBRANE PROTEIN, AMMONIUM TRANSPORTER EXPDTA X-RAY DIFFRACTION AUTHOR J.C.RUTHERFORD,A.CHEMBATH,B.VAN DEN BERG REVDAT 5 10-JAN-24 5AEZ 1 REMARK HETSYN REVDAT 4 29-JUL-20 5AEZ 1 COMPND REMARK HETNAM SITE REVDAT 3 11-MAY-16 5AEZ 1 JRNL REVDAT 2 04-MAY-16 5AEZ 1 JRNL REVDAT 1 20-JAN-16 5AEZ 0 JRNL AUTH B.VAN DEN BERG,A.CHEMBATH,D.JEFFERIES,A.BASLE,S.KHALID, JRNL AUTH 2 J.RUTHERFORD JRNL TITL STRUCTURAL BASIS FOR MEP2 AMMONIUM TRANSCEPTOR ACTIVATION BY JRNL TITL 2 PHOSPHORYLATION. JRNL REF NAT.COMMUN. V. 7 11337 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27088325 JRNL DOI 10.1038/NCOMMS11337 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 111840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7210 - 4.5660 1.00 3510 196 0.1472 0.1673 REMARK 3 2 4.5660 - 3.6247 0.99 3543 179 0.1277 0.1292 REMARK 3 3 3.6247 - 3.1667 1.00 3556 184 0.1258 0.1356 REMARK 3 4 3.1667 - 2.8772 1.00 3511 203 0.1269 0.1380 REMARK 3 5 2.8772 - 2.6710 1.00 3560 184 0.1292 0.1357 REMARK 3 6 2.6710 - 2.5136 1.00 3553 185 0.1334 0.1569 REMARK 3 7 2.5136 - 2.3877 1.00 3492 198 0.1365 0.1451 REMARK 3 8 2.3877 - 2.2838 1.00 3582 178 0.1312 0.1361 REMARK 3 9 2.2838 - 2.1958 1.00 3529 193 0.1269 0.1552 REMARK 3 10 2.1958 - 2.1201 1.00 3531 206 0.1333 0.1481 REMARK 3 11 2.1201 - 2.0538 1.00 3547 202 0.1336 0.1548 REMARK 3 12 2.0538 - 1.9951 1.00 3576 177 0.1332 0.1427 REMARK 3 13 1.9951 - 1.9426 1.00 3523 192 0.1319 0.1640 REMARK 3 14 1.9426 - 1.8952 1.00 3551 193 0.1332 0.1527 REMARK 3 15 1.8952 - 1.8521 1.00 3579 171 0.1273 0.1367 REMARK 3 16 1.8521 - 1.8127 1.00 3533 178 0.1285 0.1411 REMARK 3 17 1.8127 - 1.7764 1.00 3575 184 0.1330 0.1498 REMARK 3 18 1.7764 - 1.7429 1.00 3510 196 0.1382 0.1577 REMARK 3 19 1.7429 - 1.7118 1.00 3544 171 0.1436 0.1416 REMARK 3 20 1.7118 - 1.6827 1.00 3504 201 0.1476 0.1475 REMARK 3 21 1.6827 - 1.6556 1.00 3629 165 0.1463 0.1615 REMARK 3 22 1.6556 - 1.6301 1.00 3574 173 0.1465 0.1655 REMARK 3 23 1.6301 - 1.6061 1.00 3541 182 0.1537 0.1659 REMARK 3 24 1.6061 - 1.5835 1.00 3511 167 0.1611 0.1840 REMARK 3 25 1.5835 - 1.5621 1.00 3562 206 0.1718 0.1857 REMARK 3 26 1.5621 - 1.5418 1.00 3539 182 0.1767 0.1924 REMARK 3 27 1.5418 - 1.5226 1.00 3459 190 0.1880 0.1958 REMARK 3 28 1.5226 - 1.5042 1.00 3607 199 0.1970 0.1993 REMARK 3 29 1.5042 - 1.4867 0.99 3529 187 0.2154 0.2137 REMARK 3 30 1.4867 - 1.4700 1.00 3479 179 0.2283 0.2633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3730 REMARK 3 ANGLE : 1.081 5090 REMARK 3 CHIRALITY : 0.073 563 REMARK 3 PLANARITY : 0.005 620 REMARK 3 DIHEDRAL : 12.214 1271 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.7028 48.6898 -45.7946 REMARK 3 T TENSOR REMARK 3 T11: 0.2870 T22: 0.2097 REMARK 3 T33: 0.2054 T12: -0.0159 REMARK 3 T13: 0.0247 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 0.5758 L22: 2.2615 REMARK 3 L33: 0.2574 L12: -0.9086 REMARK 3 L13: 0.2935 L23: -0.5679 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: 0.2176 S13: 0.1598 REMARK 3 S21: -0.3140 S22: -0.0218 S23: -0.1406 REMARK 3 S31: -0.1836 S32: 0.0628 S33: 0.0428 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.1073 44.3747 -20.9229 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.1586 REMARK 3 T33: 0.1864 T12: -0.0318 REMARK 3 T13: 0.0077 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.6508 L22: 0.5307 REMARK 3 L33: 0.5913 L12: 0.0736 REMARK 3 L13: 0.2437 L23: 0.0070 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: 0.0129 S13: 0.1087 REMARK 3 S21: -0.0086 S22: 0.0046 S23: -0.0836 REMARK 3 S31: -0.1509 S32: 0.1601 S33: -0.0046 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7598 37.0738 -2.3118 REMARK 3 T TENSOR REMARK 3 T11: 0.1607 T22: 0.2739 REMARK 3 T33: 0.2064 T12: -0.0298 REMARK 3 T13: -0.0478 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.5933 L22: 0.9136 REMARK 3 L33: 0.7182 L12: 0.3974 REMARK 3 L13: 0.0880 L23: 0.1554 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.1537 S13: 0.0331 REMARK 3 S21: 0.1773 S22: -0.0018 S23: -0.1493 REMARK 3 S31: -0.0309 S32: 0.2136 S33: 0.0103 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5637 28.0128 -18.3418 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.2049 REMARK 3 T33: 0.1919 T12: 0.0080 REMARK 3 T13: -0.0096 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.5414 L22: 0.6512 REMARK 3 L33: 0.7659 L12: 0.0858 REMARK 3 L13: 0.0722 L23: 0.0956 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0194 S13: -0.0399 REMARK 3 S21: 0.0381 S22: 0.0106 S23: -0.1632 REMARK 3 S31: 0.0425 S32: 0.2575 S33: -0.0265 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 408 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3648 52.2446 7.5437 REMARK 3 T TENSOR REMARK 3 T11: 0.4270 T22: 0.5203 REMARK 3 T33: 0.3353 T12: -0.1024 REMARK 3 T13: -0.0195 T23: -0.1400 REMARK 3 L TENSOR REMARK 3 L11: 1.8271 L22: 0.4427 REMARK 3 L33: 1.0186 L12: 0.5513 REMARK 3 L13: 0.1367 L23: 0.0931 REMARK 3 S TENSOR REMARK 3 S11: 0.2853 S12: -0.9772 S13: 0.2085 REMARK 3 S21: 0.3801 S22: -0.1856 S23: -0.0210 REMARK 3 S31: -0.2311 S32: -0.0469 S33: -0.0924 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1290062732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112103 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 43.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5AEX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M TRIS PH 8.0 0.04 M NACL 27% REMARK 280 PEG350 MME REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.44000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.27625 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.55000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 52.44000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.27625 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.55000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 52.44000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.27625 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.55000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.55250 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 107.10000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 60.55250 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 107.10000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 60.55250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 107.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -52.44000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 90.82874 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -104.88000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2065 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 456 REMARK 465 SER A 457 REMARK 465 GLN A 458 REMARK 465 PRO A 459 REMARK 465 LEU A 460 REMARK 465 PRO A 461 REMARK 465 HIS A 462 REMARK 465 ILE A 463 REMARK 465 ASP A 464 REMARK 465 GLY A 465 REMARK 465 VAL A 466 REMARK 465 ALA A 467 REMARK 465 ASP A 468 REMARK 465 GLY A 469 REMARK 465 SER A 470 REMARK 465 SER A 471 REMARK 465 ASN A 472 REMARK 465 ASN A 473 REMARK 465 ASP A 474 REMARK 465 SER A 475 REMARK 465 GLY A 476 REMARK 465 GLU A 477 REMARK 465 ALA A 478 REMARK 465 LYS A 479 REMARK 465 ASN A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 465 HIS A 486 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 56 CD CE NZ REMARK 480 LYS A 204 CE NZ REMARK 480 LYS A 213 CG CD CE NZ REMARK 480 LYS A 379 CD CE NZ REMARK 480 ARG A 408 NE CZ NH1 NH2 REMARK 480 GLU A 418 CG CD OE1 OE2 REMARK 480 LEU A 423 CB CG CD1 CD2 REMARK 480 GLN A 429 CG CD OE1 NE2 REMARK 480 GLU A 432 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2255 O HOH A 2256 2.10 REMARK 500 N MET A 1 O HOH A 2001 2.12 REMARK 500 O HOH A 2107 O HOH A 2118 2.14 REMARK 500 O HOH A 2114 O HOH A 2151 2.16 REMARK 500 O HOH A 2131 O HOH A 2198 2.16 REMARK 500 O HOH A 2058 O HOH A 2059 2.16 REMARK 500 O HOH A 2112 O HOH A 2157 2.17 REMARK 500 O6 BNG A 905 O HOH A 2147 2.17 REMARK 500 O HOH A 2177 O HOH A 2178 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 79 -6.07 -151.57 REMARK 500 HIS A 87 10.83 -58.53 REMARK 500 SER A 90 -152.37 -80.69 REMARK 500 LEU A 105 -103.93 -147.69 REMARK 500 ASP A 180 89.32 -155.60 REMARK 500 VAL A 187 -61.07 -93.98 REMARK 500 LYS A 218 71.21 -156.19 REMARK 500 SER A 453 42.72 -79.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BNG A 901 REMARK 610 BNG A 902 REMARK 610 BNG A 904 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 BNG A 905 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AEX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE MEP2 DBREF 5AEZ A 1 480 UNP Q59UP8 Q59UP8_CANAL 1 480 SEQADV 5AEZ MET A 1 UNP Q59UP8 EXPRESSION TAG SEQADV 5AEZ SER A 2 UNP Q59UP8 EXPRESSION TAG SEQADV 5AEZ GLY A 3 UNP Q59UP8 EXPRESSION TAG SEQADV 5AEZ GLN A 4 UNP Q59UP8 EXPRESSION TAG SEQADV 5AEZ HIS A 481 UNP Q59UP8 EXPRESSION TAG SEQADV 5AEZ HIS A 482 UNP Q59UP8 EXPRESSION TAG SEQADV 5AEZ HIS A 483 UNP Q59UP8 EXPRESSION TAG SEQADV 5AEZ HIS A 484 UNP Q59UP8 EXPRESSION TAG SEQADV 5AEZ HIS A 485 UNP Q59UP8 EXPRESSION TAG SEQADV 5AEZ HIS A 486 UNP Q59UP8 EXPRESSION TAG SEQRES 1 A 486 MET SER GLY GLN PHE THR GLY THR GLY THR GLY GLY ASP SEQRES 2 A 486 VAL PHE LYS VAL ASP LEU ASN GLU GLN PHE ASP ARG ALA SEQRES 3 A 486 ASP MET VAL TRP ILE GLY THR ALA SER VAL LEU VAL TRP SEQRES 4 A 486 ILE MET ILE PRO GLY VAL GLY LEU LEU TYR SER GLY ILE SEQRES 5 A 486 SER ARG LYS LYS HIS ALA LEU SER LEU MET TRP ALA ALA SEQRES 6 A 486 LEU MET ALA ALA CYS VAL ALA ALA PHE GLN TRP PHE TRP SEQRES 7 A 486 TRP GLY TYR SER LEU VAL PHE ALA HIS ASN GLY SER VAL SEQRES 8 A 486 PHE LEU GLY THR LEU GLN ASN PHE CYS LEU LYS ASP VAL SEQRES 9 A 486 LEU GLY ALA PRO SER ILE VAL LYS THR VAL PRO ASP ILE SEQRES 10 A 486 LEU PHE CYS LEU TYR GLN GLY MET PHE ALA ALA VAL THR SEQRES 11 A 486 ALA ILE LEU MET ALA GLY ALA GLY CYS GLU ARG ALA ARG SEQRES 12 A 486 LEU GLY PRO MET MET VAL PHE LEU PHE ILE TRP LEU THR SEQRES 13 A 486 VAL VAL TYR CYS PRO ILE ALA TYR TRP THR TRP GLY GLY SEQRES 14 A 486 ASN GLY TRP LEU VAL SER LEU GLY ALA LEU ASP PHE ALA SEQRES 15 A 486 GLY GLY GLY PRO VAL HIS GLU ASN SER GLY PHE ALA ALA SEQRES 16 A 486 LEU ALA TYR SER LEU TRP LEU GLY LYS ARG HIS ASP PRO SEQRES 17 A 486 VAL ALA LYS GLY LYS VAL PRO LYS TYR LYS PRO HIS SER SEQRES 18 A 486 VAL SER SER ILE VAL MET GLY THR ILE PHE LEU TRP PHE SEQRES 19 A 486 GLY TRP TYR GLY PHE ASN GLY GLY SER THR GLY ASN SER SEQRES 20 A 486 SER MET ARG SER TRP TYR ALA CYS VAL ASN THR ASN LEU SEQRES 21 A 486 ALA ALA ALA THR GLY GLY LEU THR TRP MET LEU VAL ASP SEQRES 22 A 486 TRP PHE ARG THR GLY GLY LYS TRP SER THR VAL GLY LEU SEQRES 23 A 486 CYS MET GLY ALA ILE ALA GLY LEU VAL GLY ILE THR PRO SEQRES 24 A 486 ALA ALA GLY TYR VAL PRO VAL TYR THR SER VAL ILE PHE SEQRES 25 A 486 GLY ILE VAL PRO ALA ILE ILE CYS ASN PHE ALA VAL ASP SEQRES 26 A 486 LEU LYS ASP LEU LEU GLN ILE ASP ASP GLY MET ASP VAL SEQRES 27 A 486 TRP ALA LEU HIS GLY VAL GLY GLY PHE VAL GLY ASN PHE SEQRES 28 A 486 MET THR GLY LEU PHE ALA ALA ASP TYR VAL ALA MET ILE SEQRES 29 A 486 ASP GLY THR GLU ILE ASP GLY GLY TRP MET ASN HIS HIS SEQRES 30 A 486 TRP LYS GLN LEU GLY TYR GLN LEU ALA GLY SER CYS ALA SEQRES 31 A 486 VAL ALA ALA TRP SER PHE THR VAL THR SER ILE ILE LEU SEQRES 32 A 486 LEU ALA MET ASP ARG ILE PRO PHE LEU ARG ILE ARG LEU SEQRES 33 A 486 HIS GLU ASP GLU GLU MET LEU GLY THR ASP LEU ALA GLN SEQRES 34 A 486 ILE GLY GLU TYR ALA TYR TYR ALA ASP ASP ASP PRO GLU SEQRES 35 A 486 THR ASN PRO TYR VAL LEU GLU PRO ILE ARG SER THR THR SEQRES 36 A 486 ILE SER GLN PRO LEU PRO HIS ILE ASP GLY VAL ALA ASP SEQRES 37 A 486 GLY SER SER ASN ASN ASP SER GLY GLU ALA LYS ASN HIS SEQRES 38 A 486 HIS HIS HIS HIS HIS HET BNG A 901 9 HET BNG A 902 18 HET BNG A 903 21 HET BNG A 904 11 HET BNG A 905 21 HETNAM BNG NONYL BETA-D-GLUCOPYRANOSIDE HETSYN BNG BETA-NONYLGLUCOSIDE; NONYL BETA-D-GLUCOSIDE; NONYL D- HETSYN 2 BNG GLUCOSIDE; NONYL GLUCOSIDE FORMUL 2 BNG 5(C15 H30 O6) FORMUL 7 HOH *274(H2 O) HELIX 1 1 ASP A 18 PHE A 23 5 6 HELIX 2 2 ASP A 24 SER A 53 1 30 HELIX 3 3 SER A 60 TRP A 79 1 20 HELIX 4 4 TRP A 79 ALA A 86 1 8 HELIX 5 5 ASN A 98 LYS A 102 5 5 HELIX 6 6 PRO A 115 GLY A 138 1 24 HELIX 7 7 ARG A 143 VAL A 158 1 16 HELIX 8 8 VAL A 158 GLY A 168 1 11 HELIX 9 9 GLY A 171 GLY A 177 1 7 HELIX 10 10 GLY A 183 LEU A 202 1 20 HELIX 11 11 SER A 221 GLY A 242 1 22 HELIX 12 12 SER A 243 GLY A 245 5 3 HELIX 13 13 SER A 248 GLY A 278 1 31 HELIX 14 14 SER A 282 THR A 298 1 17 HELIX 15 15 PRO A 305 TYR A 307 5 3 HELIX 16 16 THR A 308 ASP A 325 1 18 HELIX 17 17 ASP A 325 GLN A 331 1 7 HELIX 18 18 GLY A 335 ALA A 357 1 23 HELIX 19 19 ALA A 358 MET A 363 1 6 HELIX 20 20 ILE A 364 GLY A 366 5 3 HELIX 21 21 GLY A 372 HIS A 376 5 5 HELIX 22 22 LYS A 379 ARG A 408 1 30 HELIX 23 23 HIS A 417 GLU A 420 5 4 HELIX 24 24 LEU A 423 ALA A 428 1 6 HELIX 25 25 GLN A 429 ASP A 438 5 10 CISPEP 1 MET A 1 SER A 2 0 0.16 CRYST1 104.880 104.880 160.650 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009535 0.005505 0.000000 0.00000 SCALE2 0.000000 0.011010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006225 0.00000