HEADER SIGNALING PROTEIN 21-JAN-15 5AFB TITLE CRYSTAL STRUCTURE OF THE LATROPHILIN3 LECTIN AND OLFACTOMEDIN DOMAINS CAVEAT 5AFB NAG A 700 HAS LONG BOND BETWEEN C1 AND C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LATROPHILIN-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LECTIN AND OLFACTOMEDIN DOMAINS, RESIDUES 97-459; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: HUMAN EMBRYONIC KIDNEY 293T; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS SIGNALING PROTEIN, ADHESION, REPULSION, GUIDANCE, BETA PROPELLER, KEYWDS 2 OLFACTOMEDIN, LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR V.A.JACKSON,D.DEL TORO,M.CARRASQUERO,P.ROVERSI,K.HARLOS,R.KLEIN, AUTHOR 2 E.SEIRADAKE REVDAT 4 29-JUL-20 5AFB 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 09-MAR-16 5AFB 1 REMARK DBREF SEQADV SEQRES REVDAT 3 2 1 MASTER REVDAT 2 22-APR-15 5AFB 1 JRNL REVDAT 1 18-MAR-15 5AFB 0 JRNL AUTH V.A.JACKSON,D.DEL TORO,M.CARRASQUERO,P.ROVERSI,K.HARLOS, JRNL AUTH 2 R.KLEIN,E.SEIRADAKE JRNL TITL STRUCTURAL BASIS OF LATROPHILIN-FLRT INTERACTION. JRNL REF STRUCTURE V. 23 774 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25728924 JRNL DOI 10.1016/J.STR.2015.01.013 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1053 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.27 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2741 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2372 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2605 REMARK 3 BIN R VALUE (WORKING SET) : 0.2354 REMARK 3 BIN FREE R VALUE : 0.2693 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.96 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 136 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.24010 REMARK 3 B22 (A**2) : 4.18450 REMARK 3 B33 (A**2) : 14.05570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.326 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.248 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.196 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.248 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.197 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2916 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3970 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 973 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 77 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 430 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2917 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 375 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3259 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.87 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.42 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 31.5692 9.0853 20.5878 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: -0.1689 REMARK 3 T33: -0.1684 T12: 0.0539 REMARK 3 T13: -0.0255 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.5107 L22: 0.7014 REMARK 3 L33: 1.0748 L12: 0.1588 REMARK 3 L13: -0.2157 L23: -0.0963 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.0450 S13: -0.0407 REMARK 3 S21: 0.0715 S22: 0.0115 S23: 0.0818 REMARK 3 S31: -0.0985 S32: -0.1160 S33: 0.0090 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AFB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1290062741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 291.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07114, 1.0716 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39860 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 62.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.490 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES BUFFER, 4M NACL, 0.6 M NON- REMARK 280 DETERGENT SULFO-BETAINE NDSB195, PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.21500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.82000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.21500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.82000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.21500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.32500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.82000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.21500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.32500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.82000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.43000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 78.43000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2006 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2077 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 89 REMARK 465 THR A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 ILE A 93 REMARK 465 PRO A 94 REMARK 465 MET A 95 REMARK 465 ALA A 96 REMARK 465 PRO A 138 REMARK 465 ALA A 139 REMARK 465 GLN A 140 REMARK 465 MET A 141 REMARK 465 GLU A 142 REMARK 465 VAL A 394 REMARK 465 TYR A 395 REMARK 465 GLU A 396 REMARK 465 ASP A 397 REMARK 465 ASP A 398 REMARK 465 ASP A 399 REMARK 465 ASN A 400 REMARK 465 GLU A 401 REMARK 465 ALA A 402 REMARK 465 THR A 403 REMARK 465 GLY A 404 REMARK 465 GLY A 460 REMARK 465 PRO A 461 REMARK 465 LEU A 462 REMARK 465 ASP A 463 REMARK 465 GLY A 464 REMARK 465 THR A 465 REMARK 465 LYS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 106 -5.76 80.47 REMARK 500 CYS A 134 78.53 55.72 REMARK 500 CYS A 178 80.35 -154.12 REMARK 500 SER A 213 -64.14 -144.38 REMARK 500 ASP A 248 21.20 -153.34 REMARK 500 HIS A 318 76.64 52.36 REMARK 500 GLU A 366 65.62 -105.05 REMARK 500 ASN A 449 71.18 39.32 REMARK 500 TYR A 450 -31.84 76.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1460 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 278 O REMARK 620 2 ASP A 332 OD1 89.3 REMARK 620 3 LEU A 333 O 90.0 87.2 REMARK 620 4 ASP A 436 OD1 137.9 132.3 96.8 REMARK 620 5 HOH A2058 O 91.7 103.6 169.0 74.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1461 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 332 OD2 REMARK 620 2 ASN A 380 OD1 88.7 REMARK 620 3 ALA A 381 O 96.4 86.2 REMARK 620 4 VAL A 435 O 157.5 103.2 103.3 REMARK 620 5 HOH A2071 O 80.5 73.2 159.2 84.7 REMARK 620 6 HOH A2072 O 84.4 172.9 95.9 82.9 104.2 REMARK 620 N 1 2 3 4 5 DBREF 5AFB A 92 463 UNP Q80TS3 AGRL3_MOUSE 92 463 SEQADV 5AFB GLU A 89 UNP Q80TS3 EXPRESSION TAG SEQADV 5AFB THR A 90 UNP Q80TS3 EXPRESSION TAG SEQADV 5AFB GLY A 91 UNP Q80TS3 EXPRESSION TAG SEQADV 5AFB GLY A 464 UNP Q80TS3 EXPRESSION TAG SEQADV 5AFB THR A 465 UNP Q80TS3 EXPRESSION TAG SEQADV 5AFB LYS A 466 UNP Q80TS3 EXPRESSION TAG SEQADV 5AFB HIS A 467 UNP Q80TS3 EXPRESSION TAG SEQADV 5AFB HIS A 468 UNP Q80TS3 EXPRESSION TAG SEQADV 5AFB HIS A 469 UNP Q80TS3 EXPRESSION TAG SEQADV 5AFB HIS A 470 UNP Q80TS3 EXPRESSION TAG SEQADV 5AFB HIS A 471 UNP Q80TS3 EXPRESSION TAG SEQADV 5AFB HIS A 472 UNP Q80TS3 EXPRESSION TAG SEQRES 1 A 384 GLU THR GLY PRO ILE PRO MET ALA VAL VAL ARG ARG GLU SEQRES 2 A 384 LEU SER CYS GLU SER TYR PRO ILE GLU LEU ARG CYS PRO SEQRES 3 A 384 GLY THR ASP VAL ILE MET ILE GLU SER ALA ASN TYR GLY SEQRES 4 A 384 ARG THR ASP ASP LYS ILE CYS ASP SER ASP PRO ALA GLN SEQRES 5 A 384 MET GLU ASN ILE ARG CYS TYR LEU PRO ASP ALA TYR LYS SEQRES 6 A 384 ILE MET SER GLN ARG CYS ASN ASN ARG THR GLN CYS ALA SEQRES 7 A 384 VAL VAL ALA GLY PRO ASP VAL PHE PRO ASP PRO CYS PRO SEQRES 8 A 384 GLY THR TYR LYS TYR LEU GLU VAL GLN TYR GLU CYS VAL SEQRES 9 A 384 PRO TYR LYS VAL GLU GLN LYS VAL PHE LEU CYS PRO GLY SEQRES 10 A 384 LEU LEU LYS GLY VAL TYR GLN SER GLU HIS LEU PHE GLU SEQRES 11 A 384 SER ASP HIS GLN SER GLY ALA TRP CYS LYS ASP PRO LEU SEQRES 12 A 384 GLN ALA SER ASP LYS ILE TYR TYR MET PRO TRP THR PRO SEQRES 13 A 384 TYR ARG THR ASP THR LEU THR GLU TYR SER SER LYS ASP SEQRES 14 A 384 ASP PHE ILE ALA GLY ARG PRO THR THR THR TYR LYS LEU SEQRES 15 A 384 PRO HIS ARG VAL ASP GLY THR GLY PHE VAL VAL TYR ASP SEQRES 16 A 384 GLY ALA LEU PHE PHE ASN LYS GLU ARG THR ARG ASN ILE SEQRES 17 A 384 VAL LYS PHE ASP LEU ARG THR ARG ILE LYS SER GLY GLU SEQRES 18 A 384 ALA ILE ILE ALA ASN ALA ASN TYR HIS ASP THR SER PRO SEQRES 19 A 384 TYR ARG TRP GLY GLY LYS SER ASP ILE ASP LEU ALA VAL SEQRES 20 A 384 ASP GLU ASN GLY LEU TRP VAL ILE TYR ALA THR GLU GLN SEQRES 21 A 384 ASN ASN GLY LYS ILE VAL ILE SER GLN LEU ASN PRO TYR SEQRES 22 A 384 THR LEU ARG ILE GLU GLY THR TRP ASP THR ALA TYR ASP SEQRES 23 A 384 LYS ARG SER ALA SER ASN ALA PHE MET ILE CYS GLY ILE SEQRES 24 A 384 LEU TYR VAL VAL LYS SER VAL TYR GLU ASP ASP ASP ASN SEQRES 25 A 384 GLU ALA THR GLY ASN LYS ILE ASP TYR ILE TYR ASN THR SEQRES 26 A 384 ASP GLN SER LYS ASP SER LEU VAL ASP VAL PRO PHE PRO SEQRES 27 A 384 ASN SER TYR GLN TYR ILE ALA ALA VAL ASP TYR ASN PRO SEQRES 28 A 384 ARG ASP ASN LEU LEU TYR VAL TRP ASN ASN TYR HIS VAL SEQRES 29 A 384 VAL LYS TYR SER LEU ASP PHE GLY PRO LEU ASP GLY THR SEQRES 30 A 384 LYS HIS HIS HIS HIS HIS HIS MODRES 5AFB ASN A 161 ASN GLYCOSYLATION SITE HET NAG A 700 14 HET NA A1460 1 HET CA A1461 1 HET GOL A1462 6 HET GOL A1463 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG C8 H15 N O6 FORMUL 3 NA NA 1+ FORMUL 4 CA CA 2+ FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *88(H2 O) HELIX 1 1 ASP A 150 ASN A 160 1 11 HELIX 2 2 GLU A 197 LEU A 202 5 6 HELIX 3 3 SER A 255 GLY A 262 1 8 HELIX 4 4 ARG A 376 ALA A 378 5 3 SHEET 1 AA 3 ARG A 99 CYS A 104 0 SHEET 2 AA 3 TYR A 184 VAL A 192 -1 O LEU A 185 N SER A 103 SHEET 3 AA 3 VAL A 118 GLY A 127 -1 O VAL A 118 N VAL A 192 SHEET 1 AB 2 PRO A 108 ARG A 112 0 SHEET 2 AB 2 GLN A 164 VAL A 168 -1 O CYS A 165 N LEU A 111 SHEET 1 AC 4 GLY A 209 GLU A 218 0 SHEET 2 AC 4 HIS A 451 ASP A 458 -1 O VAL A 452 N LEU A 216 SHEET 3 AC 4 LEU A 443 ASN A 448 -1 O LEU A 444 N TYR A 455 SHEET 4 AC 4 ILE A 432 ASN A 438 -1 N ALA A 433 O TRP A 447 SHEET 1 AD 4 GLY A 224 CYS A 227 0 SHEET 2 AD 4 ILE A 237 PRO A 241 -1 O TYR A 238 N CYS A 227 SHEET 3 AD 4 THR A 249 TYR A 253 -1 O THR A 251 N TYR A 239 SHEET 4 AD 4 THR A 266 LYS A 269 -1 O THR A 266 N GLU A 252 SHEET 1 AE 4 VAL A 280 TYR A 282 0 SHEET 2 AE 4 ALA A 285 ASN A 289 -1 O ALA A 285 N TYR A 282 SHEET 3 AE 4 ASN A 295 ASP A 300 -1 O VAL A 297 N PHE A 288 SHEET 4 AE 4 ILE A 305 ILE A 311 -1 O ILE A 305 N ASP A 300 SHEET 1 AF 4 ASP A 332 ASP A 336 0 SHEET 2 AF 4 GLY A 339 ALA A 345 -1 O GLY A 339 N ASP A 336 SHEET 3 AF 4 LYS A 352 LEU A 358 -1 O VAL A 354 N TYR A 344 SHEET 4 AF 4 ILE A 365 ASP A 374 -1 N GLU A 366 O GLN A 357 SHEET 1 AG 4 ASN A 380 ILE A 384 0 SHEET 2 AG 4 ILE A 387 LYS A 392 -1 O ILE A 387 N ILE A 384 SHEET 3 AG 4 LYS A 406 ASN A 412 -1 O LYS A 406 N LYS A 392 SHEET 4 AG 4 LYS A 417 PRO A 424 -1 O LYS A 417 N ASN A 412 SSBOND 1 CYS A 104 CYS A 134 1555 1555 2.03 SSBOND 2 CYS A 113 CYS A 191 1555 1555 2.04 SSBOND 3 CYS A 146 CYS A 178 1555 1555 2.03 SSBOND 4 CYS A 159 CYS A 165 1555 1555 2.04 SSBOND 5 CYS A 203 CYS A 385 1555 1555 2.03 LINK ND2 ASN A 161 C1 NAG A 700 1555 1555 1.43 LINK O GLY A 278 NA NA A1460 1555 1555 2.69 LINK OD1 ASP A 332 NA NA A1460 1555 1555 2.29 LINK OD2 ASP A 332 CA CA A1461 1555 1555 2.28 LINK O LEU A 333 NA NA A1460 1555 1555 2.31 LINK OD1 ASN A 380 CA CA A1461 1555 1555 2.60 LINK O ALA A 381 CA CA A1461 1555 1555 2.30 LINK O VAL A 435 CA CA A1461 1555 1555 2.45 LINK OD1 ASP A 436 NA NA A1460 1555 1555 2.57 LINK NA NA A1460 O HOH A2058 1555 1555 2.24 LINK CA CA A1461 O HOH A2071 1555 1555 2.73 LINK CA CA A1461 O HOH A2072 1555 1555 2.47 CRYST1 78.430 96.650 101.640 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012750 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009839 0.00000