HEADER HYDROLASE 29-JAN-15 5AG9 TITLE CRYSTAL STRUCTURE OF A MUTANT (665SXA) C-TERMINAL DOMAIN OF RGPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: GINGIPAIN R2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: IGSF AND CTD DOMAINS, RESIDUES 577-736; COMPND 5 SYNONYM: ARG-GINGIPAIN,GINGIPAIN 2,RGP-2; COMPND 6 EC: 3.4.22.37; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: FACTOR XA CLEAVAGE SITE SUBSTITUTING RESIDUES 665-669 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS W83; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 GENE: RGPB, PRTRII, RGP2, PG_0506; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HYDROLASE, TYPE IX SECRETION SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR I.DE DIEGO,M.KSIAZEK,D.MIZGALSKA,P.GOLIK,B.SZMIGIELSKI,M.NOWAK, AUTHOR 2 Z.NOWAKOWSKA,B.POTEMPA,L.KONERU,K.A.NGUYEN,J.ENGHILD,I.B.THOGERSEN, AUTHOR 3 G.DUBIN,F.X.GOMIS-RUTH,J.POTEMPA REVDAT 3 10-JAN-24 5AG9 1 REMARK REVDAT 2 14-NOV-18 5AG9 1 COMPND SOURCE JRNL DBREF REVDAT 1 06-APR-16 5AG9 0 JRNL AUTH I.DE DIEGO,M.KSIAZEK,D.MIZGALSKA,L.KONERU,P.GOLIK, JRNL AUTH 2 B.SZMIGIELSKI,M.NOWAK,Z.NOWAKOWSKA,B.POTEMPA,J.A.HOUSTON, JRNL AUTH 3 J.J.ENGHILD,I.B.THOGERSEN,J.GAO,A.H.KWAN,J.TREWHELLA, JRNL AUTH 4 G.DUBIN,F.X.GOMIS-RUTH,K.A.NGUYEN,J.POTEMPA JRNL TITL THE OUTER-MEMBRANE EXPORT SIGNAL OF PORPHYROMONAS GINGIVALIS JRNL TITL 2 TYPE IX SECRETION SYSTEM (T9SS) IS A CONSERVED C-TERMINAL JRNL TITL 3 BETA-SANDWICH DOMAIN. JRNL REF SCI REP V. 6 23123 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27005013 JRNL DOI 10.1038/SREP23123 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 888 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1167 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.52000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.251 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.955 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2248 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3050 ; 1.924 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 6.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;44.201 ;25.897 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;16.826 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 9.075 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1586 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. HYDROGENS HAVE BEEN REMARK 3 USED IF PRESENT IN THE INPUT. RESIDUES 663-671 ARE DISORDERED REMARK 4 REMARK 4 5AG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1290062879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 38.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5AG8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000,0.2 M (NH4)2SO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.90500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 575 REMARK 465 PRO A 576 REMARK 465 THR A 577 REMARK 465 LEU A 578 REMARK 465 THR A 663 REMARK 465 SER A 664 REMARK 465 ILE A 665 REMARK 465 GLU A 666 REMARK 465 GLY A 667 REMARK 465 ARG A 668 REMARK 465 ALA A 669 REMARK 465 ALA A 670 REMARK 465 ASP A 671 REMARK 465 GLY B 575 REMARK 465 PRO B 576 REMARK 465 THR B 577 REMARK 465 LEU B 578 REMARK 465 THR B 663 REMARK 465 SER B 664 REMARK 465 ILE B 665 REMARK 465 GLU B 666 REMARK 465 GLY B 667 REMARK 465 ARG B 668 REMARK 465 ALA B 669 REMARK 465 ALA B 670 REMARK 465 ASP B 671 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LYS B 672 O HOH B 2071 1.93 REMARK 500 O HOH A 2025 O HOH A 2064 2.10 REMARK 500 O HOH B 2020 O HOH B 2060 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 614 94.54 -10.73 REMARK 500 PRO A 673 48.50 -92.00 REMARK 500 ASN A 707 -56.32 77.30 REMARK 500 ASN B 707 -56.90 76.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1738 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1737 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1737 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1738 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1739 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AG8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MUTANT (665I6H) OF THE C- TERMINAL DOMAIN OF REMARK 900 RGPB REMARK 900 RELATED ID: 5AGB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MUTATED (666I6H) C-TERMINAL DOMAIN OF RGPB REMARK 999 REMARK 999 SEQUENCE REMARK 999 FACTOR XA CLEAVAGE SITE (IEGRAA) SUBSTITUTES RESIDUES 665- REMARK 999 670 FIRST TWO RESIDUES REMANENT OF ENGINEERED 3C PROTEASE REMARK 999 CLEAVAGE SITE DBREF 5AG9 A 577 736 UNP P95493 CPG2_PORGI 577 736 DBREF 5AG9 B 577 736 UNP P95493 CPG2_PORGI 577 736 SEQADV 5AG9 GLY A 575 UNP P95493 EXPRESSION TAG SEQADV 5AG9 PRO A 576 UNP P95493 EXPRESSION TAG SEQADV 5AG9 GLU A 666 UNP P95493 ALA 666 ENGINEERED MUTATION SEQADV 5AG9 GLY A 667 UNP P95493 ASP 667 ENGINEERED MUTATION SEQADV 5AG9 ARG A 668 UNP P95493 VAL 668 ENGINEERED MUTATION SEQADV 5AG9 ALA A 670 UNP P95493 ASN 670 ENGINEERED MUTATION SEQADV 5AG9 GLY B 575 UNP P95493 EXPRESSION TAG SEQADV 5AG9 PRO B 576 UNP P95493 EXPRESSION TAG SEQADV 5AG9 GLU B 666 UNP P95493 ALA 666 ENGINEERED MUTATION SEQADV 5AG9 GLY B 667 UNP P95493 ASP 667 ENGINEERED MUTATION SEQADV 5AG9 ARG B 668 UNP P95493 VAL 668 ENGINEERED MUTATION SEQADV 5AG9 ALA B 670 UNP P95493 ASN 670 ENGINEERED MUTATION SEQRES 1 A 162 GLY PRO THR LEU VAL PRO THR LYS MET GLN VAL THR ALA SEQRES 2 A 162 PRO ALA ASN ILE SER ALA SER ALA GLN THR PHE GLU VAL SEQRES 3 A 162 ALA CYS ASP TYR ASN GLY ALA ILE ALA THR LEU SER ASP SEQRES 4 A 162 ASP GLY ASP MET VAL GLY THR ALA ILE VAL LYS ASP GLY SEQRES 5 A 162 LYS ALA ILE ILE LYS LEU ASN GLU SER ILE ALA ASP GLU SEQRES 6 A 162 THR ASN LEU THR LEU THR VAL VAL GLY TYR ASN LYS VAL SEQRES 7 A 162 THR VAL ILE LYS ASP VAL LYS VAL GLU GLY THR SER ILE SEQRES 8 A 162 GLU GLY ARG ALA ALA ASP LYS PRO TYR THR VAL ALA VAL SEQRES 9 A 162 SER GLY LYS THR ILE THR VAL GLU SER PRO ALA ALA GLY SEQRES 10 A 162 LEU THR ILE PHE ASP MET ASN GLY ARG ARG VAL ALA THR SEQRES 11 A 162 ALA LYS ASN ARG MET VAL PHE GLU ALA GLN ASN GLY VAL SEQRES 12 A 162 TYR ALA VAL ARG ILE ALA THR GLU GLY LYS THR TYR THR SEQRES 13 A 162 GLU LYS VAL ILE VAL LYS SEQRES 1 B 162 GLY PRO THR LEU VAL PRO THR LYS MET GLN VAL THR ALA SEQRES 2 B 162 PRO ALA ASN ILE SER ALA SER ALA GLN THR PHE GLU VAL SEQRES 3 B 162 ALA CYS ASP TYR ASN GLY ALA ILE ALA THR LEU SER ASP SEQRES 4 B 162 ASP GLY ASP MET VAL GLY THR ALA ILE VAL LYS ASP GLY SEQRES 5 B 162 LYS ALA ILE ILE LYS LEU ASN GLU SER ILE ALA ASP GLU SEQRES 6 B 162 THR ASN LEU THR LEU THR VAL VAL GLY TYR ASN LYS VAL SEQRES 7 B 162 THR VAL ILE LYS ASP VAL LYS VAL GLU GLY THR SER ILE SEQRES 8 B 162 GLU GLY ARG ALA ALA ASP LYS PRO TYR THR VAL ALA VAL SEQRES 9 B 162 SER GLY LYS THR ILE THR VAL GLU SER PRO ALA ALA GLY SEQRES 10 B 162 LEU THR ILE PHE ASP MET ASN GLY ARG ARG VAL ALA THR SEQRES 11 B 162 ALA LYS ASN ARG MET VAL PHE GLU ALA GLN ASN GLY VAL SEQRES 12 B 162 TYR ALA VAL ARG ILE ALA THR GLU GLY LYS THR TYR THR SEQRES 13 B 162 GLU LYS VAL ILE VAL LYS HET SO4 A1737 5 HET SO4 A1738 5 HET SO4 B1737 5 HET SO4 B1738 5 HET SO4 B1739 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *254(H2 O) SHEET 1 AA 3 VAL A 585 THR A 586 0 SHEET 2 AA 3 THR A 597 CYS A 602 -1 O ALA A 601 N THR A 586 SHEET 3 AA 3 LYS A 627 LYS A 631 -1 O ALA A 628 N VAL A 600 SHEET 1 AB 5 ASN A 590 SER A 592 0 SHEET 2 AB 5 VAL A 654 GLU A 661 1 O LYS A 659 N ILE A 591 SHEET 3 AB 5 ASN A 641 VAL A 647 -1 O LEU A 642 N VAL A 658 SHEET 4 AB 5 ILE A 608 ASP A 613 -1 O ILE A 608 N VAL A 647 SHEET 5 AB 5 ASP A 616 ILE A 622 -1 O ASP A 616 N ASP A 613 SHEET 1 AC 2 THR A 675 SER A 679 0 SHEET 2 AC 2 THR A 682 PHE A 695 -1 O THR A 682 N SER A 679 SHEET 1 AD 2 ARG A 701 GLU A 712 0 SHEET 2 AD 2 THR A 682 PHE A 695 -1 O ILE A 683 N PHE A 711 SHEET 1 AE 4 THR A 728 VAL A 735 0 SHEET 2 AE 4 GLY A 716 ALA A 723 -1 O GLY A 716 N VAL A 735 SHEET 3 AE 4 THR A 682 PHE A 695 -1 O GLY A 691 N ALA A 723 SHEET 4 AE 4 ARG A 701 GLU A 712 -1 N VAL A 702 O ILE A 694 SHEET 1 AF 4 THR A 728 VAL A 735 0 SHEET 2 AF 4 GLY A 716 ALA A 723 -1 O GLY A 716 N VAL A 735 SHEET 3 AF 4 THR A 682 PHE A 695 -1 O GLY A 691 N ALA A 723 SHEET 4 AF 4 THR A 675 SER A 679 -1 O THR A 675 N GLU A 686 SHEET 1 BA 3 VAL B 585 THR B 586 0 SHEET 2 BA 3 THR B 597 CYS B 602 -1 O ALA B 601 N THR B 586 SHEET 3 BA 3 LYS B 627 LYS B 631 -1 O ALA B 628 N VAL B 600 SHEET 1 BB 5 ASN B 590 SER B 592 0 SHEET 2 BB 5 LYS B 651 GLU B 661 1 O LYS B 659 N ILE B 591 SHEET 3 BB 5 ASN B 641 GLY B 648 -1 O LEU B 642 N VAL B 658 SHEET 4 BB 5 ILE B 608 ASP B 613 -1 O ILE B 608 N VAL B 647 SHEET 5 BB 5 ASP B 616 ILE B 622 -1 O ASP B 616 N ASP B 613 SHEET 1 BC 2 THR B 675 SER B 679 0 SHEET 2 BC 2 THR B 682 PHE B 695 -1 O THR B 682 N SER B 679 SHEET 1 BD 2 ARG B 701 GLU B 712 0 SHEET 2 BD 2 THR B 682 PHE B 695 -1 O ILE B 683 N PHE B 711 SHEET 1 BE 4 THR B 728 VAL B 735 0 SHEET 2 BE 4 GLY B 716 ALA B 723 -1 O GLY B 716 N VAL B 735 SHEET 3 BE 4 THR B 682 PHE B 695 -1 O GLY B 691 N ALA B 723 SHEET 4 BE 4 ARG B 701 GLU B 712 -1 N VAL B 702 O ILE B 694 SHEET 1 BF 4 THR B 728 VAL B 735 0 SHEET 2 BF 4 GLY B 716 ALA B 723 -1 O GLY B 716 N VAL B 735 SHEET 3 BF 4 THR B 682 PHE B 695 -1 O GLY B 691 N ALA B 723 SHEET 4 BF 4 THR B 675 SER B 679 -1 O THR B 675 N GLU B 686 SITE 1 AC1 3 HOH A2102 ASN B 707 ARG B 708 SITE 1 AC2 5 GLU A 661 GLY A 662 ARG A 721 THR A 728 SITE 2 AC2 5 HOH A2117 SITE 1 AC3 7 LYS B 659 GLU B 661 GLY B 662 ARG B 721 SITE 2 AC3 7 THR B 728 HOH B2055 HOH B2118 SITE 1 AC4 4 GLN A 714 HOH A2109 ALA B 589 LYS B 656 SITE 1 AC5 5 PRO B 588 ALA B 589 ASN B 590 HOH B2011 SITE 2 AC5 5 HOH B2012 CRYST1 51.570 61.810 54.050 90.00 116.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019391 0.000000 0.009791 0.00000 SCALE2 0.000000 0.016179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020726 0.00000