HEADER ISOMERASE 09-FEB-15 5AHT TITLE THIRD WW DOMAIN FROM THE E3 UBIQUITIN-PROTEIN LIGASE NEDD4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE NEDD4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WW3, UNP RESIDUES 838-877; COMPND 5 EC: 6.3.2.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2TK KEYWDS ISOMERASE, WW3, PROTEIN-PEPTIDE COMPLEX, PROTEIN DYNAMICS, PROEIN KEYWDS 2 STRUCTURE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR V.PANWALKAR,J.LECHER,A.DINGLEY REVDAT 4 31-JAN-24 5AHT 1 REMARK REVDAT 3 23-JUN-21 5AHT 1 REMARK ATOM REVDAT 2 02-MAR-16 5AHT 1 JRNL REVDAT 1 27-JAN-16 5AHT 0 JRNL AUTH V.PANWALKAR,P.NEUDECKER,M.SCHMITZ,J.LECHER,M.SCHULTE, JRNL AUTH 2 K.MEDINI,M.STOLDT,M.A.BRIMBLE,D.WILLBOLD,A.J.DINGLEY JRNL TITL THE NEDD4-1 WW DOMAIN RECOGNIZES THE PY MOTIF PEPTIDE JRNL TITL 2 THROUGH COUPLED FOLDING AND BINDING EQUILIBRIA. JRNL REF BIOCHEMISTRY V. 55 659 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 26685112 JRNL DOI 10.1021/ACS.BIOCHEM.5B01028 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 5AHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1290062840. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-99% 13C; U-99% 15N] REMARK 210 NEDD4 WW3* DOMAIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 0.5 MM DSS, 90% 2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 13C_HSQCNOESY; 15N_HSQCNOESY; REMARK 210 13C(AROMATIC)_HSQCNOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : VNMRSYS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.4.1, ARIA REMARK 210 2.3.2, RELAX 3.3.6, NMRPIPE REMARK 210 METHOD USED : SEMI-AUTOMATED NOE ASSIGNMENT, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED NEDD4 WW3. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 MET A 3 -62.83 -144.26 REMARK 500 2 PRO A 9 171.27 -57.50 REMARK 500 3 GLU A 35 -167.98 -161.69 REMARK 500 4 GLU A 4 59.37 -109.00 REMARK 500 4 PHE A 7 -65.83 66.13 REMARK 500 5 MET A 3 18.14 54.27 REMARK 500 6 SER A 2 156.26 58.46 REMARK 500 6 GLU A 4 34.24 -149.44 REMARK 500 7 PRO A 42 40.58 -78.87 REMARK 500 8 PHE A 7 -60.76 74.96 REMARK 500 10 PRO A 9 172.12 -58.63 REMARK 500 10 PRO A 42 72.11 -66.35 REMARK 500 11 GLU A 35 88.53 -158.24 REMARK 500 12 GLU A 35 98.79 -160.45 REMARK 500 13 PRO A 9 171.42 -58.44 REMARK 500 13 PRO A 42 67.08 -66.79 REMARK 500 14 MET A 3 66.18 -115.89 REMARK 500 14 PRO A 42 46.47 -88.65 REMARK 500 15 PHE A 7 -49.57 76.36 REMARK 500 15 LYS A 30 60.08 66.34 REMARK 500 15 GLU A 35 96.22 -160.46 REMARK 500 15 PRO A 42 68.24 -68.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25349 RELATED DB: BMRB DBREF 5AHT A 4 43 UNP P46934 NEDD4_HUMAN 838 877 SEQADV 5AHT GLY A 1 UNP P46934 EXPRESSION TAG SEQADV 5AHT SER A 2 UNP P46934 EXPRESSION TAG SEQADV 5AHT MET A 3 UNP P46934 EXPRESSION TAG SEQRES 1 A 43 GLY SER MET GLU GLN GLY PHE LEU PRO LYS GLY TRP GLU SEQRES 2 A 43 VAL ARG HIS ALA PRO ASN GLY ARG PRO PHE PHE ILE ASP SEQRES 3 A 43 HIS ASN THR LYS THR THR THR TRP GLU ASP PRO ARG LEU SEQRES 4 A 43 LYS ILE PRO ALA HELIX 1 1 ASP A 36 LYS A 40 5 5 SHEET 1 AA 3 TRP A 12 HIS A 16 0 SHEET 2 AA 3 PRO A 22 ASP A 26 -1 O PHE A 23 N ARG A 15 SHEET 3 AA 3 THR A 31 THR A 33 -1 O THR A 31 N ASP A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1