data_5AIE # _entry.id 5AIE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5AIE PDBE EBI-63035 WWPDB D_1290063035 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5AIE _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-02-12 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bhaskar, V.' 1 'Basquin, J.' 2 'Conti, E.' 3 # _citation.id primary _citation.title 'Architecture of the Ubiquitylation Module of the Yeast Ccr4-not Complex.' _citation.journal_abbrev Structure _citation.journal_volume 23 _citation.page_first 921 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25914052 _citation.pdbx_database_id_DOI 10.1016/J.STR.2015.03.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bhaskar, V.' 1 primary 'Basquin, J.' 2 primary 'Conti, E.' 3 # _cell.entry_id 5AIE _cell.length_a 107.112 _cell.length_b 107.112 _cell.length_c 62.203 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AIE _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 4' 6796.774 1 ? ? 'RING DOMAIN, RESIDUES 30-83' ? 2 polymer man 'UBIQUITIN-CONJUGATING ENZYME E2 4' 17353.561 1 6.3.2.19 ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'NOT4, MODULATOR OF TRANSCRIPTION 2' 2 'UBC4, UBIQUITIN CARRIER PROTEIN 4, UBIQUITIN-PROTEIN LIGASE 4' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no RSMEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYDD RSMEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYDD A ? 2 'polypeptide(L)' no no ;TGSTGSTETGMSSSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISF TTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV ; ;TGSTGSTETGMSSSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISF TTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 SER n 1 3 MET n 1 4 GLU n 1 5 ASP n 1 6 TYR n 1 7 CYS n 1 8 PRO n 1 9 LEU n 1 10 CYS n 1 11 ILE n 1 12 GLU n 1 13 PRO n 1 14 MET n 1 15 ASP n 1 16 ILE n 1 17 THR n 1 18 ASP n 1 19 LYS n 1 20 ASN n 1 21 PHE n 1 22 PHE n 1 23 PRO n 1 24 CYS n 1 25 PRO n 1 26 CYS n 1 27 GLY n 1 28 TYR n 1 29 GLN n 1 30 ILE n 1 31 CYS n 1 32 GLN n 1 33 PHE n 1 34 CYS n 1 35 TYR n 1 36 ASN n 1 37 ASN n 1 38 ILE n 1 39 ARG n 1 40 GLN n 1 41 ASN n 1 42 PRO n 1 43 GLU n 1 44 LEU n 1 45 ASN n 1 46 GLY n 1 47 ARG n 1 48 CYS n 1 49 PRO n 1 50 ALA n 1 51 CYS n 1 52 ARG n 1 53 ARG n 1 54 LYS n 1 55 TYR n 1 56 ASP n 1 57 ASP n 2 1 THR n 2 2 GLY n 2 3 SER n 2 4 THR n 2 5 GLY n 2 6 SER n 2 7 THR n 2 8 GLU n 2 9 THR n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 SER n 2 14 SER n 2 15 LYS n 2 16 ARG n 2 17 ILE n 2 18 ALA n 2 19 LYS n 2 20 GLU n 2 21 LEU n 2 22 SER n 2 23 ASP n 2 24 LEU n 2 25 GLU n 2 26 ARG n 2 27 ASP n 2 28 PRO n 2 29 PRO n 2 30 THR n 2 31 SER n 2 32 CYS n 2 33 SER n 2 34 ALA n 2 35 GLY n 2 36 PRO n 2 37 VAL n 2 38 GLY n 2 39 ASP n 2 40 ASP n 2 41 LEU n 2 42 TYR n 2 43 HIS n 2 44 TRP n 2 45 GLN n 2 46 ALA n 2 47 SER n 2 48 ILE n 2 49 MET n 2 50 GLY n 2 51 PRO n 2 52 ALA n 2 53 ASP n 2 54 SER n 2 55 PRO n 2 56 TYR n 2 57 ALA n 2 58 GLY n 2 59 GLY n 2 60 VAL n 2 61 PHE n 2 62 PHE n 2 63 LEU n 2 64 SER n 2 65 ILE n 2 66 HIS n 2 67 PHE n 2 68 PRO n 2 69 THR n 2 70 ASP n 2 71 TYR n 2 72 PRO n 2 73 PHE n 2 74 LYS n 2 75 PRO n 2 76 PRO n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 PHE n 2 81 THR n 2 82 THR n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 HIS n 2 87 PRO n 2 88 ASN n 2 89 ILE n 2 90 ASN n 2 91 ALA n 2 92 ASN n 2 93 GLY n 2 94 ASN n 2 95 ILE n 2 96 CYS n 2 97 LEU n 2 98 ASP n 2 99 ILE n 2 100 LEU n 2 101 LYS n 2 102 ASP n 2 103 GLN n 2 104 TRP n 2 105 SER n 2 106 PRO n 2 107 ALA n 2 108 LEU n 2 109 THR n 2 110 LEU n 2 111 SER n 2 112 LYS n 2 113 VAL n 2 114 LEU n 2 115 LEU n 2 116 SER n 2 117 ILE n 2 118 CYS n 2 119 SER n 2 120 LEU n 2 121 LEU n 2 122 THR n 2 123 ASP n 2 124 ALA n 2 125 ASN n 2 126 PRO n 2 127 ASP n 2 128 ASP n 2 129 PRO n 2 130 LEU n 2 131 VAL n 2 132 PRO n 2 133 GLU n 2 134 ILE n 2 135 ALA n 2 136 HIS n 2 137 ILE n 2 138 TYR n 2 139 LYS n 2 140 THR n 2 141 ASP n 2 142 ARG n 2 143 PRO n 2 144 LYS n 2 145 TYR n 2 146 GLU n 2 147 ALA n 2 148 THR n 2 149 ALA n 2 150 ARG n 2 151 GLU n 2 152 TRP n 2 153 THR n 2 154 LYS n 2 155 LYS n 2 156 TYR n 2 157 ALA n 2 158 VAL n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ;BAKER'S YEAST ; ? ? ? S288C ? ? ? ? 'SACCHAROMYCES CEREVISIAE' 559292 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' PLYSS ? ? ? ? ? ? ? 'PEC VECTOR' ? ? PEC-HIS-SUMO ? ? 2 1 sample ? ? ? ;BAKER'S YEAST ; ? ? ? S288C ? ? ? ? 'SACCHAROMYCES CEREVISIAE' 559292 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' PLYSS ? ? ? ? ? ? ? 'PEC VECTOR' ? ? PEC-HIS-SUMO ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP NOT4_YEAST 1 ? ? P34909 ? 2 UNP UBC4_YEAST 2 ? ? P15731 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5AIE A 4 ? 57 ? P34909 30 ? 83 ? 30 83 2 2 5AIE B 11 ? 158 ? P15731 1 ? 148 ? 1 148 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5AIE ARG A 1 ? UNP P34909 ? ? 'expression tag' 27 1 1 5AIE SER A 2 ? UNP P34909 ? ? 'expression tag' 28 2 1 5AIE MET A 3 ? UNP P34909 ? ? 'expression tag' 29 3 2 5AIE THR B 1 ? UNP P15731 ? ? 'expression tag' -9 4 2 5AIE GLY B 2 ? UNP P15731 ? ? 'expression tag' -8 5 2 5AIE SER B 3 ? UNP P15731 ? ? 'expression tag' -7 6 2 5AIE THR B 4 ? UNP P15731 ? ? 'expression tag' -6 7 2 5AIE GLY B 5 ? UNP P15731 ? ? 'expression tag' -5 8 2 5AIE SER B 6 ? UNP P15731 ? ? 'expression tag' -4 9 2 5AIE THR B 7 ? UNP P15731 ? ? 'expression tag' -3 10 2 5AIE GLU B 8 ? UNP P15731 ? ? 'expression tag' -2 11 2 5AIE THR B 9 ? UNP P15731 ? ? 'expression tag' -1 12 2 5AIE GLY B 10 ? UNP P15731 ? ? 'expression tag' 0 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 5AIE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_percent_sol 56.86 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;10% (W/V) PEG 8000, 0.02 M OF L-NA-GLUTAMATE, 0.02 M OF ALANINE (RACEMIC), 0.02 M OF GLYCINE, 0.02 M OF LYSINE HCL (RACEMIC), 0.02 M OF SERINE (RACEMIC), 0.1 M BICINE PH 8.5 AND 20% (W/V) ETHYLENE GLYCOL AS CRYSTALLIZATION BUFFER AT ROOM TEMPERATURE. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.pdbx_collection_date 2014-09-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MONOCHROMATOR _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99995 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength 0.99995 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5AIE _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 53.56 _reflns.d_resolution_high 2.80 _reflns.number_obs 6541 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.35 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 95.2 _reflns_shell.Rmerge_I_obs 0.97 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.10 _reflns_shell.pdbx_redundancy 10.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5AIE _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6505 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.47 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 53.556 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 98.59 _refine.ls_R_factor_obs 0.2246 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2200 _refine.ls_R_factor_R_free 0.2706 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.2 _refine.ls_number_reflns_R_free 1200 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 87.23 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.45 _refine.pdbx_overall_phase_error 38.34 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1573 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1575 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 53.556 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.002 ? ? 1621 'X-RAY DIFFRACTION' ? f_angle_d 0.525 ? ? 2217 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 10.503 ? ? 589 'X-RAY DIFFRACTION' ? f_chiral_restr 0.023 ? ? 239 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 292 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.7969 2.9089 1223 0.4193 94.00 0.4470 . . 128 . . 'X-RAY DIFFRACTION' . 2.9089 3.0413 1316 0.3326 98.00 0.3679 . . 124 . . 'X-RAY DIFFRACTION' . 3.0413 3.2016 1295 0.3115 100.00 0.4051 . . 133 . . 'X-RAY DIFFRACTION' . 3.2016 3.4021 1334 0.2973 99.00 0.3026 . . 131 . . 'X-RAY DIFFRACTION' . 3.4021 3.6648 1339 0.2704 98.00 0.2747 . . 140 . . 'X-RAY DIFFRACTION' . 3.6648 4.0335 1282 0.2500 99.00 0.3055 . . 139 . . 'X-RAY DIFFRACTION' . 4.0335 4.6168 1314 0.2037 100.00 0.3186 . . 158 . . 'X-RAY DIFFRACTION' . 4.6168 5.8156 1328 0.2111 100.00 0.2419 . . 122 . . 'X-RAY DIFFRACTION' . 5.8156 53.5658 1345 0.1604 100.00 0.1978 . . 125 . . # _struct.entry_id 5AIE _struct.title 'Not4 ring domain in complex with Ubc4' _struct.pdbx_descriptor 'GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 4, UBIQUITIN-CONJUGATING ENZYME E2 4 (E.C.6.3.2.19)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5AIE _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'LIGASE, SIGNALING PROTEIN, NOT4 RING DOMAIN, UBC4, E2-E3 LIGASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 16 ? ASN A 20 ? ILE A 42 ASN A 46 1 ? 5 HELX_P HELX_P2 2 GLN A 32 ? GLN A 40 ? GLN A 58 GLN A 66 1 ? 9 HELX_P HELX_P3 3 SER B 12 ? ARG B 26 ? SER B 2 ARG B 16 1 ? 15 HELX_P HELX_P4 4 LEU B 110 ? THR B 122 ? LEU B 100 THR B 112 1 ? 13 HELX_P HELX_P5 5 PRO B 132 ? THR B 140 ? PRO B 122 THR B 130 1 ? 9 HELX_P HELX_P6 6 ARG B 142 ? ALA B 157 ? ARG B 132 ALA B 147 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? C ZN . ZN ? ? ? 1_555 A CYS 10 SG ? ? A ZN 1083 A CYS 36 1_555 ? ? ? ? ? ? ? 2.384 ? metalc2 metalc ? ? C ZN . ZN ? ? ? 1_555 A CYS 7 SG ? ? A ZN 1083 A CYS 33 1_555 ? ? ? ? ? ? ? 2.703 ? metalc3 metalc ? ? C ZN . ZN ? ? ? 1_555 A CYS 34 SG ? ? A ZN 1083 A CYS 60 1_555 ? ? ? ? ? ? ? 2.386 ? metalc4 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 26 SG ? ? A ZN 1084 A CYS 52 1_555 ? ? ? ? ? ? ? 2.364 ? metalc5 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 24 SG ? ? A ZN 1084 A CYS 50 1_555 ? ? ? ? ? ? ? 2.414 ? metalc6 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 51 SG ? ? A ZN 1084 A CYS 77 1_555 ? ? ? ? ? ? ? 2.335 ? metalc7 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 48 SG ? ? A ZN 1084 A CYS 74 1_555 ? ? ? ? ? ? ? 2.477 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 71 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 61 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 72 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 62 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.32 # _struct_sheet.id BA _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id BA 1 CYS B 32 ? PRO B 36 ? CYS B 22 PRO B 26 BA 2 HIS B 43 ? MET B 49 ? HIS B 33 MET B 39 BA 3 VAL B 60 ? HIS B 66 ? VAL B 50 HIS B 56 BA 4 LYS B 77 ? PHE B 80 ? LYS B 67 PHE B 70 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id BA 1 2 N GLY B 35 ? N GLY B 25 O GLN B 45 ? O GLN B 35 BA 2 3 N ILE B 48 ? N ILE B 38 O PHE B 61 ? O PHE B 51 BA 3 4 N HIS B 66 ? N HIS B 56 O LYS B 77 ? O LYS B 67 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1083' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1084' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 7 ? CYS A 33 . ? 1_555 ? 2 AC1 4 CYS A 10 ? CYS A 36 . ? 1_555 ? 3 AC1 4 CYS A 31 ? CYS A 57 . ? 1_555 ? 4 AC1 4 CYS A 34 ? CYS A 60 . ? 1_555 ? 5 AC2 4 CYS A 24 ? CYS A 50 . ? 1_555 ? 6 AC2 4 CYS A 26 ? CYS A 52 . ? 1_555 ? 7 AC2 4 CYS A 48 ? CYS A 74 . ? 1_555 ? 8 AC2 4 CYS A 51 ? CYS A 77 . ? 1_555 ? # _database_PDB_matrix.entry_id 5AIE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5AIE _atom_sites.fract_transf_matrix[1][1] 0.009336 _atom_sites.fract_transf_matrix[1][2] 0.005390 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010780 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016076 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 27 ? ? ? A . n A 1 2 SER 2 28 ? ? ? A . n A 1 3 MET 3 29 29 MET MET A . n A 1 4 GLU 4 30 30 GLU GLU A . n A 1 5 ASP 5 31 31 ASP ASP A . n A 1 6 TYR 6 32 32 TYR TYR A . n A 1 7 CYS 7 33 33 CYS CYS A . n A 1 8 PRO 8 34 34 PRO PRO A . n A 1 9 LEU 9 35 35 LEU LEU A . n A 1 10 CYS 10 36 36 CYS CYS A . n A 1 11 ILE 11 37 37 ILE ILE A . n A 1 12 GLU 12 38 38 GLU GLU A . n A 1 13 PRO 13 39 39 PRO PRO A . n A 1 14 MET 14 40 40 MET MET A . n A 1 15 ASP 15 41 41 ASP ASP A . n A 1 16 ILE 16 42 42 ILE ILE A . n A 1 17 THR 17 43 43 THR THR A . n A 1 18 ASP 18 44 44 ASP ASP A . n A 1 19 LYS 19 45 45 LYS LYS A . n A 1 20 ASN 20 46 46 ASN ASN A . n A 1 21 PHE 21 47 47 PHE PHE A . n A 1 22 PHE 22 48 48 PHE PHE A . n A 1 23 PRO 23 49 49 PRO PRO A . n A 1 24 CYS 24 50 50 CYS CYS A . n A 1 25 PRO 25 51 51 PRO PRO A . n A 1 26 CYS 26 52 52 CYS CYS A . n A 1 27 GLY 27 53 53 GLY GLY A . n A 1 28 TYR 28 54 54 TYR TYR A . n A 1 29 GLN 29 55 55 GLN GLN A . n A 1 30 ILE 30 56 56 ILE ILE A . n A 1 31 CYS 31 57 57 CYS CYS A . n A 1 32 GLN 32 58 58 GLN GLN A . n A 1 33 PHE 33 59 59 PHE PHE A . n A 1 34 CYS 34 60 60 CYS CYS A . n A 1 35 TYR 35 61 61 TYR TYR A . n A 1 36 ASN 36 62 62 ASN ASN A . n A 1 37 ASN 37 63 63 ASN ASN A . n A 1 38 ILE 38 64 64 ILE ILE A . n A 1 39 ARG 39 65 65 ARG ARG A . n A 1 40 GLN 40 66 66 GLN GLN A . n A 1 41 ASN 41 67 67 ASN ASN A . n A 1 42 PRO 42 68 68 PRO PRO A . n A 1 43 GLU 43 69 69 GLU GLU A . n A 1 44 LEU 44 70 70 LEU LEU A . n A 1 45 ASN 45 71 71 ASN ASN A . n A 1 46 GLY 46 72 72 GLY GLY A . n A 1 47 ARG 47 73 73 ARG ARG A . n A 1 48 CYS 48 74 74 CYS CYS A . n A 1 49 PRO 49 75 75 PRO PRO A . n A 1 50 ALA 50 76 76 ALA ALA A . n A 1 51 CYS 51 77 77 CYS CYS A . n A 1 52 ARG 52 78 78 ARG ARG A . n A 1 53 ARG 53 79 79 ARG ARG A . n A 1 54 LYS 54 80 80 LYS LYS A . n A 1 55 TYR 55 81 81 TYR TYR A . n A 1 56 ASP 56 82 82 ASP ASP A . n A 1 57 ASP 57 83 ? ? ? A . n B 2 1 THR 1 -9 ? ? ? B . n B 2 2 GLY 2 -8 ? ? ? B . n B 2 3 SER 3 -7 ? ? ? B . n B 2 4 THR 4 -6 ? ? ? B . n B 2 5 GLY 5 -5 ? ? ? B . n B 2 6 SER 6 -4 ? ? ? B . n B 2 7 THR 7 -3 ? ? ? B . n B 2 8 GLU 8 -2 ? ? ? B . n B 2 9 THR 9 -1 -1 THR THR B . n B 2 10 GLY 10 0 0 GLY GLY B . n B 2 11 MET 11 1 1 MET MET B . n B 2 12 SER 12 2 2 SER SER B . n B 2 13 SER 13 3 3 SER SER B . n B 2 14 SER 14 4 4 SER SER B . n B 2 15 LYS 15 5 5 LYS LYS B . n B 2 16 ARG 16 6 6 ARG ARG B . n B 2 17 ILE 17 7 7 ILE ILE B . n B 2 18 ALA 18 8 8 ALA ALA B . n B 2 19 LYS 19 9 9 LYS LYS B . n B 2 20 GLU 20 10 10 GLU GLU B . n B 2 21 LEU 21 11 11 LEU LEU B . n B 2 22 SER 22 12 12 SER SER B . n B 2 23 ASP 23 13 13 ASP ASP B . n B 2 24 LEU 24 14 14 LEU LEU B . n B 2 25 GLU 25 15 15 GLU GLU B . n B 2 26 ARG 26 16 16 ARG ARG B . n B 2 27 ASP 27 17 17 ASP ASP B . n B 2 28 PRO 28 18 18 PRO PRO B . n B 2 29 PRO 29 19 19 PRO PRO B . n B 2 30 THR 30 20 20 THR THR B . n B 2 31 SER 31 21 21 SER SER B . n B 2 32 CYS 32 22 22 CYS CYS B . n B 2 33 SER 33 23 23 SER SER B . n B 2 34 ALA 34 24 24 ALA ALA B . n B 2 35 GLY 35 25 25 GLY GLY B . n B 2 36 PRO 36 26 26 PRO PRO B . n B 2 37 VAL 37 27 27 VAL VAL B . n B 2 38 GLY 38 28 28 GLY GLY B . n B 2 39 ASP 39 29 29 ASP ASP B . n B 2 40 ASP 40 30 30 ASP ASP B . n B 2 41 LEU 41 31 31 LEU LEU B . n B 2 42 TYR 42 32 32 TYR TYR B . n B 2 43 HIS 43 33 33 HIS HIS B . n B 2 44 TRP 44 34 34 TRP TRP B . n B 2 45 GLN 45 35 35 GLN GLN B . n B 2 46 ALA 46 36 36 ALA ALA B . n B 2 47 SER 47 37 37 SER SER B . n B 2 48 ILE 48 38 38 ILE ILE B . n B 2 49 MET 49 39 39 MET MET B . n B 2 50 GLY 50 40 40 GLY GLY B . n B 2 51 PRO 51 41 41 PRO PRO B . n B 2 52 ALA 52 42 42 ALA ALA B . n B 2 53 ASP 53 43 43 ASP ASP B . n B 2 54 SER 54 44 44 SER SER B . n B 2 55 PRO 55 45 45 PRO PRO B . n B 2 56 TYR 56 46 46 TYR TYR B . n B 2 57 ALA 57 47 47 ALA ALA B . n B 2 58 GLY 58 48 48 GLY GLY B . n B 2 59 GLY 59 49 49 GLY GLY B . n B 2 60 VAL 60 50 50 VAL VAL B . n B 2 61 PHE 61 51 51 PHE PHE B . n B 2 62 PHE 62 52 52 PHE PHE B . n B 2 63 LEU 63 53 53 LEU LEU B . n B 2 64 SER 64 54 54 SER SER B . n B 2 65 ILE 65 55 55 ILE ILE B . n B 2 66 HIS 66 56 56 HIS HIS B . n B 2 67 PHE 67 57 57 PHE PHE B . n B 2 68 PRO 68 58 58 PRO PRO B . n B 2 69 THR 69 59 59 THR THR B . n B 2 70 ASP 70 60 60 ASP ASP B . n B 2 71 TYR 71 61 61 TYR TYR B . n B 2 72 PRO 72 62 62 PRO PRO B . n B 2 73 PHE 73 63 63 PHE PHE B . n B 2 74 LYS 74 64 64 LYS LYS B . n B 2 75 PRO 75 65 65 PRO PRO B . n B 2 76 PRO 76 66 66 PRO PRO B . n B 2 77 LYS 77 67 67 LYS LYS B . n B 2 78 ILE 78 68 68 ILE ILE B . n B 2 79 SER 79 69 69 SER SER B . n B 2 80 PHE 80 70 70 PHE PHE B . n B 2 81 THR 81 71 71 THR THR B . n B 2 82 THR 82 72 72 THR THR B . n B 2 83 LYS 83 73 73 LYS LYS B . n B 2 84 ILE 84 74 74 ILE ILE B . n B 2 85 TYR 85 75 75 TYR TYR B . n B 2 86 HIS 86 76 76 HIS HIS B . n B 2 87 PRO 87 77 77 PRO PRO B . n B 2 88 ASN 88 78 78 ASN ASN B . n B 2 89 ILE 89 79 79 ILE ILE B . n B 2 90 ASN 90 80 80 ASN ASN B . n B 2 91 ALA 91 81 81 ALA ALA B . n B 2 92 ASN 92 82 82 ASN ASN B . n B 2 93 GLY 93 83 83 GLY GLY B . n B 2 94 ASN 94 84 84 ASN ASN B . n B 2 95 ILE 95 85 85 ILE ILE B . n B 2 96 CYS 96 86 86 CYS CYS B . n B 2 97 LEU 97 87 87 LEU LEU B . n B 2 98 ASP 98 88 88 ASP ASP B . n B 2 99 ILE 99 89 89 ILE ILE B . n B 2 100 LEU 100 90 90 LEU LEU B . n B 2 101 LYS 101 91 91 LYS LYS B . n B 2 102 ASP 102 92 92 ASP ASP B . n B 2 103 GLN 103 93 93 GLN GLN B . n B 2 104 TRP 104 94 94 TRP TRP B . n B 2 105 SER 105 95 95 SER SER B . n B 2 106 PRO 106 96 96 PRO PRO B . n B 2 107 ALA 107 97 97 ALA ALA B . n B 2 108 LEU 108 98 98 LEU LEU B . n B 2 109 THR 109 99 99 THR THR B . n B 2 110 LEU 110 100 100 LEU LEU B . n B 2 111 SER 111 101 101 SER SER B . n B 2 112 LYS 112 102 102 LYS LYS B . n B 2 113 VAL 113 103 103 VAL VAL B . n B 2 114 LEU 114 104 104 LEU LEU B . n B 2 115 LEU 115 105 105 LEU LEU B . n B 2 116 SER 116 106 106 SER SER B . n B 2 117 ILE 117 107 107 ILE ILE B . n B 2 118 CYS 118 108 108 CYS CYS B . n B 2 119 SER 119 109 109 SER SER B . n B 2 120 LEU 120 110 110 LEU LEU B . n B 2 121 LEU 121 111 111 LEU LEU B . n B 2 122 THR 122 112 112 THR THR B . n B 2 123 ASP 123 113 113 ASP ASP B . n B 2 124 ALA 124 114 114 ALA ALA B . n B 2 125 ASN 125 115 115 ASN ASN B . n B 2 126 PRO 126 116 116 PRO PRO B . n B 2 127 ASP 127 117 117 ASP ASP B . n B 2 128 ASP 128 118 118 ASP ASP B . n B 2 129 PRO 129 119 119 PRO PRO B . n B 2 130 LEU 130 120 120 LEU LEU B . n B 2 131 VAL 131 121 121 VAL VAL B . n B 2 132 PRO 132 122 122 PRO PRO B . n B 2 133 GLU 133 123 123 GLU GLU B . n B 2 134 ILE 134 124 124 ILE ILE B . n B 2 135 ALA 135 125 125 ALA ALA B . n B 2 136 HIS 136 126 126 HIS HIS B . n B 2 137 ILE 137 127 127 ILE ILE B . n B 2 138 TYR 138 128 128 TYR TYR B . n B 2 139 LYS 139 129 129 LYS LYS B . n B 2 140 THR 140 130 130 THR THR B . n B 2 141 ASP 141 131 131 ASP ASP B . n B 2 142 ARG 142 132 132 ARG ARG B . n B 2 143 PRO 143 133 133 PRO PRO B . n B 2 144 LYS 144 134 134 LYS LYS B . n B 2 145 TYR 145 135 135 TYR TYR B . n B 2 146 GLU 146 136 136 GLU GLU B . n B 2 147 ALA 147 137 137 ALA ALA B . n B 2 148 THR 148 138 138 THR THR B . n B 2 149 ALA 149 139 139 ALA ALA B . n B 2 150 ARG 150 140 140 ARG ARG B . n B 2 151 GLU 151 141 141 GLU GLU B . n B 2 152 TRP 152 142 142 TRP TRP B . n B 2 153 THR 153 143 143 THR THR B . n B 2 154 LYS 154 144 144 LYS LYS B . n B 2 155 LYS 155 145 145 LYS LYS B . n B 2 156 TYR 156 146 146 TYR TYR B . n B 2 157 ALA 157 147 147 ALA ALA B . n B 2 158 VAL 158 148 148 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 1083 1083 ZN ZN A . D 3 ZN 1 1084 1084 ZN ZN A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 10 ? A CYS 36 ? 1_555 ZN ? C ZN . ? A ZN 1083 ? 1_555 SG ? A CYS 7 ? A CYS 33 ? 1_555 92.8 ? 2 SG ? A CYS 10 ? A CYS 36 ? 1_555 ZN ? C ZN . ? A ZN 1083 ? 1_555 SG ? A CYS 34 ? A CYS 60 ? 1_555 99.2 ? 3 SG ? A CYS 7 ? A CYS 33 ? 1_555 ZN ? C ZN . ? A ZN 1083 ? 1_555 SG ? A CYS 34 ? A CYS 60 ? 1_555 102.9 ? 4 SG ? A CYS 26 ? A CYS 52 ? 1_555 ZN ? D ZN . ? A ZN 1084 ? 1_555 SG ? A CYS 24 ? A CYS 50 ? 1_555 97.8 ? 5 SG ? A CYS 26 ? A CYS 52 ? 1_555 ZN ? D ZN . ? A ZN 1084 ? 1_555 SG ? A CYS 51 ? A CYS 77 ? 1_555 112.8 ? 6 SG ? A CYS 24 ? A CYS 50 ? 1_555 ZN ? D ZN . ? A ZN 1084 ? 1_555 SG ? A CYS 51 ? A CYS 77 ? 1_555 102.7 ? 7 SG ? A CYS 26 ? A CYS 52 ? 1_555 ZN ? D ZN . ? A ZN 1084 ? 1_555 SG ? A CYS 48 ? A CYS 74 ? 1_555 96.5 ? 8 SG ? A CYS 24 ? A CYS 50 ? 1_555 ZN ? D ZN . ? A ZN 1084 ? 1_555 SG ? A CYS 48 ? A CYS 74 ? 1_555 106.3 ? 9 SG ? A CYS 51 ? A CYS 77 ? 1_555 ZN ? D ZN . ? A ZN 1084 ? 1_555 SG ? A CYS 48 ? A CYS 74 ? 1_555 135.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-29 2 'Structure model' 1 1 2015-05-13 3 'Structure model' 1 2 2015-05-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; 700 ; SHEET DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_entry_details.entry_id 5AIE _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;RSM RESIDUES ARE LEFT OVER AFTER THE TAG CLEAVAGE TGSTGSTETG RESIDUES ARE THE ARTIFICIAL LINKER USED TO FUSE THE C-TERMINUS OF THE RING DOMAIN OF NOT4 WITH THE N- TERMINAL METHIONINE OF THE UBC4 ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 76 ? ? -97.12 -73.82 2 1 THR B 20 ? ? 54.92 -129.40 3 1 SER B 37 ? ? -160.97 99.66 4 1 GLN B 93 ? ? -140.87 14.24 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 29 ? CG ? A MET 3 CG 2 1 Y 1 A MET 29 ? SD ? A MET 3 SD 3 1 Y 1 A MET 29 ? CE ? A MET 3 CE 4 1 Y 1 A GLU 30 ? CG ? A GLU 4 CG 5 1 Y 1 A GLU 30 ? CD ? A GLU 4 CD 6 1 Y 1 A GLU 30 ? OE1 ? A GLU 4 OE1 7 1 Y 1 A GLU 30 ? OE2 ? A GLU 4 OE2 8 1 Y 1 A ASP 31 ? CG ? A ASP 5 CG 9 1 Y 1 A ASP 31 ? OD1 ? A ASP 5 OD1 10 1 Y 1 A ASP 31 ? OD2 ? A ASP 5 OD2 11 1 Y 1 A THR 43 ? OG1 ? A THR 17 OG1 12 1 Y 1 A THR 43 ? CG2 ? A THR 17 CG2 13 1 Y 1 A GLN 58 ? CG ? A GLN 32 CG 14 1 Y 1 A GLN 58 ? CD ? A GLN 32 CD 15 1 Y 1 A GLN 58 ? OE1 ? A GLN 32 OE1 16 1 Y 1 A GLN 58 ? NE2 ? A GLN 32 NE2 17 1 Y 1 A ILE 64 ? CG1 ? A ILE 38 CG1 18 1 Y 1 A ILE 64 ? CG2 ? A ILE 38 CG2 19 1 Y 1 A ILE 64 ? CD1 ? A ILE 38 CD1 20 1 Y 1 A LYS 80 ? CG ? A LYS 54 CG 21 1 Y 1 A LYS 80 ? CD ? A LYS 54 CD 22 1 Y 1 A LYS 80 ? CE ? A LYS 54 CE 23 1 Y 1 A LYS 80 ? NZ ? A LYS 54 NZ 24 1 Y 1 B ARG 16 ? CG ? B ARG 26 CG 25 1 Y 1 B ARG 16 ? CD ? B ARG 26 CD 26 1 Y 1 B ARG 16 ? NE ? B ARG 26 NE 27 1 Y 1 B ARG 16 ? CZ ? B ARG 26 CZ 28 1 Y 1 B ARG 16 ? NH1 ? B ARG 26 NH1 29 1 Y 1 B ARG 16 ? NH2 ? B ARG 26 NH2 30 1 Y 1 B LYS 67 ? CG ? B LYS 77 CG 31 1 Y 1 B LYS 67 ? CD ? B LYS 77 CD 32 1 Y 1 B LYS 67 ? CE ? B LYS 77 CE 33 1 Y 1 B LYS 67 ? NZ ? B LYS 77 NZ 34 1 Y 1 B LYS 73 ? CG ? B LYS 83 CG 35 1 Y 1 B LYS 73 ? CD ? B LYS 83 CD 36 1 Y 1 B LYS 73 ? CE ? B LYS 83 CE 37 1 Y 1 B LYS 73 ? NZ ? B LYS 83 NZ 38 1 Y 1 B LYS 144 ? CG ? B LYS 154 CG 39 1 Y 1 B LYS 144 ? CD ? B LYS 154 CD 40 1 Y 1 B LYS 144 ? CE ? B LYS 154 CE 41 1 Y 1 B LYS 144 ? NZ ? B LYS 154 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 27 ? A ARG 1 2 1 Y 1 A SER 28 ? A SER 2 3 1 Y 1 A ASP 83 ? A ASP 57 4 1 Y 1 B THR -9 ? B THR 1 5 1 Y 1 B GLY -8 ? B GLY 2 6 1 Y 1 B SER -7 ? B SER 3 7 1 Y 1 B THR -6 ? B THR 4 8 1 Y 1 B GLY -5 ? B GLY 5 9 1 Y 1 B SER -4 ? B SER 6 10 1 Y 1 B THR -3 ? B THR 7 11 1 Y 1 B GLU -2 ? B GLU 8 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #