HEADER TRANSPORT PROTEIN 05-MAR-15 5AL0 TITLE TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY OF TITLE 2 NATURAL POLYPHENOLS AND THEIR METABOLITES: RESVERATROL-3-O-SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-147; COMPND 5 SYNONYM: ATTR, PREALBUMIN, TBPA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS TRANSPORT PROTEIN, AMYLOID, FIBRILLOGENESIS, FIBRILLOGENESIS KEYWDS 2 INHIBITORS, POLYPHENOLS, POLYPHENOL METABOLITES, NEGATIVE KEYWDS 3 COOPERATIVITY EXPDTA X-RAY DIFFRACTION AUTHOR P.FLORIO,C.FOLL,M.CIANCI,D.DEL RIO,G.ZANOTTI,R.BERNI REVDAT 5 10-JAN-24 5AL0 1 REMARK REVDAT 4 15-MAY-19 5AL0 1 REMARK ATOM REVDAT 3 13-JAN-16 5AL0 1 JRNL REVDAT 2 28-OCT-15 5AL0 1 JRNL REVDAT 1 21-OCT-15 5AL0 0 JRNL AUTH P.FLORIO,C.FOLLI,M.CIANCI,D.DEL RIO,G.ZANOTTI,R.BERNI JRNL TITL TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC JRNL TITL 2 ACTIVITY OF NATURAL POLYPHENOLS AND THEIR METABOLITES JRNL REF J.BIOL.CHEM. V. 290 29769 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26468275 JRNL DOI 10.1074/JBC.M115.690172 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 46830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8048 - 3.5692 0.99 2863 150 0.1574 0.2150 REMARK 3 2 3.5692 - 2.8331 1.00 2779 146 0.1643 0.1847 REMARK 3 3 2.8331 - 2.4751 1.00 2733 145 0.1629 0.2040 REMARK 3 4 2.4751 - 2.2488 1.00 2710 141 0.1587 0.1646 REMARK 3 5 2.2488 - 2.0876 0.99 2672 141 0.1538 0.2020 REMARK 3 6 2.0876 - 1.9645 0.98 2664 141 0.1662 0.1953 REMARK 3 7 1.9645 - 1.8661 0.97 2612 137 0.1619 0.2363 REMARK 3 8 1.8661 - 1.7849 1.00 2663 141 0.1808 0.1910 REMARK 3 9 1.7849 - 1.7162 1.00 2689 141 0.1821 0.2500 REMARK 3 10 1.7162 - 1.6570 1.00 2680 141 0.1826 0.1986 REMARK 3 11 1.6570 - 1.6051 1.00 2662 141 0.1803 0.2214 REMARK 3 12 1.6051 - 1.5593 1.00 2674 140 0.1827 0.2165 REMARK 3 13 1.5593 - 1.5182 0.98 2616 136 0.2187 0.2837 REMARK 3 14 1.5182 - 1.4812 0.98 2610 138 0.2310 0.2423 REMARK 3 15 1.4812 - 1.4475 0.96 2581 136 0.2779 0.3427 REMARK 3 16 1.4475 - 1.4167 0.96 2547 135 0.2657 0.2656 REMARK 3 17 1.4167 - 1.3883 0.66 1733 92 0.2204 0.2420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2206 REMARK 3 ANGLE : 1.180 3059 REMARK 3 CHIRALITY : 0.069 328 REMARK 3 PLANARITY : 0.007 401 REMARK 3 DIHEDRAL : 12.827 807 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PAD P2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45697 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 42.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1F41 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF WT HUMAN TTR- LIGAND REMARK 280 COMPLEXES WERE OBTAINED AT ROOM TEMPERATURE IN ABOUT ONE WEEK BY REMARK 280 CO-CRYSTALLIZATION, USING THE HANGING-DROP VAPOR DIFFUSION REMARK 280 METHOD. THE PROTEIN (5 MG/ML), IN 20 MM SODIUM PHOSPHATE, PH 7, REMARK 280 WAS INCUBATED WITH A FOUR-FOLD MOLAR EXCESS OF LIGANDS REMARK 280 SOLUBILIZED IN DMSO. DROPS WERE FORMED BY MIXING EQUAL VOLUMES REMARK 280 OF THE SOLUTION CONTAINING LIGAND-TTR COMPLEXES AND OF THE REMARK 280 RESERVOIR/PRECIPITANT SOLUTION (2.2 M AMMONIUM SULPHATE, 0.1 M REMARK 280 KCL, 0.03 M SODIUM PHOSPHATE, PH 7.0)., VAPOR DIFFUSION, HANGING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.40700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.78450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.40700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.78450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 42.81400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 85.56900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C06 R3S A1127 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2009 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 PRO B 125 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ALA A 81 O HOH A 2098 1.41 REMARK 500 HH TYR A 116 O HOH A 2123 1.43 REMARK 500 O SER A 77 O HOH A 2098 1.90 REMARK 500 OD1 ASP B 74 O HOH B 2065 1.94 REMARK 500 O HOH A 2059 O HOH A 2060 1.94 REMARK 500 O ALA A 97 O HOH A 2089 1.98 REMARK 500 N LYS A 80 O HOH A 2098 2.00 REMARK 500 O21 R3S A 1127 O HOH A 2143 2.07 REMARK 500 OH TYR A 116 O HOH A 2123 2.08 REMARK 500 O HOH A 2061 O HOH A 2062 2.10 REMARK 500 OG SER B 85 O HOH B 2087 2.13 REMARK 500 OE2 GLU A 66 O HOH A 2085 2.13 REMARK 500 O ASP A 38 O HOH A 2047 2.14 REMARK 500 O HOH A 2055 O HOH A 2093 2.14 REMARK 500 O4 SO4 A 1126 O HOH A 2095 2.15 REMARK 500 OD1 ASN B 27 O HOH B 2016 2.15 REMARK 500 N ALA A 81 O HOH A 2098 2.16 REMARK 500 O HOH B 2098 O HOH B 2106 2.16 REMARK 500 O DMS A 1128 O HOH A 2140 2.16 REMARK 500 O HOH A 2093 O HOH A 2095 2.17 REMARK 500 OD1 ASN A 27 O HOH A 2028 2.17 REMARK 500 O HOH A 2093 O HOH A 2094 2.17 REMARK 500 O HOH A 2056 O HOH A 2143 2.19 REMARK 500 OD1 ASP A 99 O HOH A 2126 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2072 O HOH A 2085 4556 2.10 REMARK 500 O19 R3S A 1127 O HOH A 2005 2665 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R3S B 1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R3S A 1127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1128 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AKS RELATED DB: PDB REMARK 900 TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY REMARK 900 OF NATURAL POLYPHENOLS AND THEIR METABOLITES: RESVERATROL-3-O- REMARK 900 GLUCURONIDE REMARK 900 RELATED ID: 5AKT RELATED DB: PDB REMARK 900 TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY REMARK 900 OF NATURAL POLYPHENOLS AND THEIR METABOLITES: RESVERATROL-4'-O- REMARK 900 GLUCURONIDE REMARK 900 RELATED ID: 5AKV RELATED DB: PDB REMARK 900 TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY REMARK 900 OF NATURAL POLYPHENOLS AND THEIR METABOLITES: GENISTEIN-7-O- REMARK 900 GLUCURONIDE REMARK 900 RELATED ID: 5AL8 RELATED DB: PDB REMARK 900 TRANSTHYRETIN BINDING HETEROGENEITY AND ANTI-AMYLOIDOGENIC ACTIVITY REMARK 900 OF NATURAL POLYPHENOLS AND THEIR METABOLITES: DAIDZEIN-7-O- REMARK 900 GLUCURONIDE DBREF 5AL0 A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 5AL0 B 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU HET SO4 A1126 5 HET R3S A1127 32 HET DMS A1128 10 HET SO4 B1125 5 HET R3S B1126 32 HETNAM SO4 SULFATE ION HETNAM R3S RESVERATROL-3-O-SULFATE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 R3S 2(C14 H12 O6 S) FORMUL 5 DMS C2 H6 O S FORMUL 8 HOH *264(H2 O) HELIX 1 1 ASP A 74 LEU A 82 1 9 HELIX 2 2 ASP B 74 LEU B 82 1 9 SHEET 1 AA 2 SER A 23 PRO A 24 0 SHEET 2 AA 2 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 1 AB 2 GLU A 54 LEU A 55 0 SHEET 2 AB 2 LEU A 12 ASP A 18 -1 O VAL A 14 N LEU A 55 SHEET 1 BA 2 SER B 23 PRO B 24 0 SHEET 2 BA 2 LEU B 12 ASP B 18 -1 N ASP B 18 O SER B 23 SHEET 1 BB 2 GLU B 54 LEU B 55 0 SHEET 2 BB 2 LEU B 12 ASP B 18 -1 O VAL B 14 N LEU B 55 SHEET 1 AC 8 TRP A 41 LYS A 48 0 SHEET 2 AC 8 ALA A 29 LYS A 35 -1 O VAL A 30 N GLY A 47 SHEET 3 AC 8 GLY A 67 ILE A 73 -1 O ILE A 68 N LYS A 35 SHEET 4 AC 8 HIS A 88 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 5 AC 8 HIS B 88 ALA B 97 -1 N GLU B 89 O VAL A 94 SHEET 6 AC 8 GLY B 67 ILE B 73 -1 O GLY B 67 N ALA B 97 SHEET 7 AC 8 ALA B 29 LYS B 35 -1 O HIS B 31 N GLU B 72 SHEET 8 AC 8 TRP B 41 LYS B 48 -1 O GLU B 42 N ARG B 34 SITE 1 AC1 7 LYS A 35 TRP A 41 HOH A2055 LYS B 70 SITE 2 AC1 7 GLU B 72 HIS B 90 GLU B 92 SITE 1 AC2 9 GLU A 72 HIS A 90 GLU A 92 HOH A2092 SITE 2 AC2 9 HOH A2095 HOH A2096 HOH A2156 LYS B 35 SITE 3 AC2 9 TRP B 41 SITE 1 AC3 7 LYS B 15 LEU B 17 THR B 106 LEU B 110 SITE 2 AC3 7 SER B 117 VAL B 121 HOH B2107 SITE 1 AC4 9 LYS A 15 LEU A 17 THR A 106 LEU A 110 SITE 2 AC4 9 SER A 117 VAL A 121 HOH A2005 HOH A2143 SITE 3 AC4 9 HOH A2144 SITE 1 AC5 3 HOH A2139 HOH A2140 TYR B 114 CRYST1 42.814 85.569 64.122 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023357 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011686 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015595 0.00000