HEADER OXIDOREDUCTASE 07-MAR-15 5ALA TITLE STRUCTURE OF LEISHMANIA MAJOR PEROXIDASE D211R MUTANT (LOW RES) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASCORBATE PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL CATALYTIC DOMAIN, RESIDUES 35-303; COMPND 5 SYNONYM: CYTOCHROME C PEROXIDASE; COMPND 6 EC: 1.11.1.11, 1.11.1.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_COMMON: LEISHMANIA MAJOR; SOURCE 4 ORGANISM_TAXID: 5664; SOURCE 5 STRAIN: FRIEDLIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.CHREIFI,S.A.HOLLINGSWORTH,H.LI,S.TRIPATHI,A.P.ARCE,H.I.MAGANA- AUTHOR 2 GARCIA,T.L.POULOS REVDAT 4 10-JAN-24 5ALA 1 REMARK LINK REVDAT 3 18-SEP-19 5ALA 1 JRNL REVDAT 2 17-JUN-15 5ALA 1 JRNL REVDAT 1 20-MAY-15 5ALA 0 JRNL AUTH G.CHREIFI,S.A.HOLLINGSWORTH,H.LI,S.TRIPATHI,A.P.ARCE, JRNL AUTH 2 H.I.MAGANA-GARCIA,T.L.POULOS JRNL TITL ENZYMATIC MECHANISM OF LEISHMANIA MAJOR PEROXIDASE AND THE JRNL TITL 2 CRITICAL ROLE OF SPECIFIC IONIC INTERACTIONS. JRNL REF BIOCHEMISTRY V. 54 3328 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25941976 JRNL DOI 10.1021/ACS.BIOCHEM.5B00338 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8415 - 6.2434 1.00 2686 107 0.1837 0.2997 REMARK 3 2 6.2434 - 4.9583 1.00 2638 145 0.2019 0.3063 REMARK 3 3 4.9583 - 4.3324 1.00 2646 134 0.1593 0.2102 REMARK 3 4 4.3324 - 3.9366 1.00 2633 152 0.1603 0.2163 REMARK 3 5 3.9366 - 3.6546 1.00 2637 165 0.1853 0.2210 REMARK 3 6 3.6546 - 3.4393 1.00 2639 127 0.2120 0.2730 REMARK 3 7 3.4393 - 3.2671 1.00 2596 158 0.2429 0.3122 REMARK 3 8 3.2671 - 3.1249 1.00 2674 158 0.2710 0.3566 REMARK 3 9 3.1249 - 3.0047 1.00 2647 121 0.2948 0.3716 REMARK 3 10 3.0047 - 2.9010 1.00 2636 164 0.3210 0.3485 REMARK 3 11 2.9010 - 2.8103 1.00 2639 148 0.3571 0.4096 REMARK 3 12 2.8103 - 2.7300 1.00 2653 122 0.3973 0.4742 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 4480 REMARK 3 ANGLE : 1.277 6082 REMARK 3 CHIRALITY : 0.050 616 REMARK 3 PLANARITY : 0.007 784 REMARK 3 DIHEDRAL : 15.131 1654 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 34:300) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8518 25.0756 210.2917 REMARK 3 T TENSOR REMARK 3 T11: 0.4696 T22: 0.2991 REMARK 3 T33: 0.3240 T12: -0.0691 REMARK 3 T13: -0.1309 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.1479 L22: 3.9664 REMARK 3 L33: 4.3369 L12: -0.5818 REMARK 3 L13: -0.0394 L23: -1.3509 REMARK 3 S TENSOR REMARK 3 S11: -0.0635 S12: 0.3163 S13: 0.0215 REMARK 3 S21: -0.8478 S22: 0.0087 S23: -0.1184 REMARK 3 S31: 0.3979 S32: 0.1110 S33: 0.0514 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 34:300) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2490 -12.0476 194.4919 REMARK 3 T TENSOR REMARK 3 T11: 0.8497 T22: 0.1141 REMARK 3 T33: 0.2262 T12: -0.0714 REMARK 3 T13: -0.0538 T23: -0.0700 REMARK 3 L TENSOR REMARK 3 L11: 1.7011 L22: 1.9629 REMARK 3 L33: 2.8886 L12: 0.3225 REMARK 3 L13: 0.4223 L23: -0.0168 REMARK 3 S TENSOR REMARK 3 S11: -0.3590 S12: -0.2810 S13: 0.1824 REMARK 3 S21: -0.6148 S22: 0.0210 S23: -0.0666 REMARK 3 S31: -0.5009 S32: 0.0381 S33: -0.0361 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED USING GROUP B-FACTOR AND NCS REMARK 3 FOR 2.73A RESOLUTION. RESIDUES 301-303 ARE DISORDERED. REMARK 4 REMARK 4 5ALA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 47.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.85000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 1.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3RIV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG MME 5000, 0.1M MES:NAOH PH REMARK 280 6.5, 5% DMSO, 7.5 MM PRASEODIMIUM(III) ACETATE HYDRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.94000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.94000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 301 REMARK 465 GLU A 302 REMARK 465 SER A 303 REMARK 465 SER B 301 REMARK 465 GLU B 302 REMARK 465 SER B 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 159 O HOH B 2027 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 37 C - N - CA ANGL. DEV. = 12.6 DEGREES REMARK 500 CYS B 75 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 35 142.71 -36.59 REMARK 500 LYS A 55 75.84 -162.55 REMARK 500 THR A 167 -154.04 -131.12 REMARK 500 ARG A 211 79.30 -107.58 REMARK 500 ASP A 216 -156.75 -152.95 REMARK 500 SER A 218 3.37 -68.48 REMARK 500 THR A 245 13.68 59.91 REMARK 500 GLU B 35 53.70 21.11 REMARK 500 GLU B 36 129.33 -23.22 REMARK 500 LYS B 55 72.39 -163.53 REMARK 500 THR B 167 -152.23 -133.30 REMARK 500 ASP B 216 -159.69 -149.71 REMARK 500 SER B 218 0.82 -66.69 REMARK 500 THR B 245 11.02 58.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 307 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 69 O REMARK 620 2 SER A 72 OG 102.2 REMARK 620 3 GLU A 92 OE2 124.5 127.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 192 NE2 REMARK 620 2 HEM A 305 NA 102.1 REMARK 620 3 HEM A 305 NB 86.6 92.3 REMARK 620 4 HEM A 305 NC 82.6 175.3 88.1 REMARK 620 5 HEM A 305 ND 101.7 87.2 171.6 91.7 REMARK 620 6 HOH A2004 O 174.4 73.7 89.8 101.6 82.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 306 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 193 O REMARK 620 2 THR A 193 OG1 53.4 REMARK 620 3 ARG A 211 O 88.7 140.9 REMARK 620 4 GLY A 214 O 77.8 85.5 96.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 192 NE2 REMARK 620 2 HEM B 305 NA 97.7 REMARK 620 3 HEM B 305 NB 95.0 84.2 REMARK 620 4 HEM B 305 NC 85.5 172.5 88.7 REMARK 620 5 HEM B 305 ND 94.7 94.3 170.3 92.2 REMARK 620 6 HOH B2011 O 163.5 86.5 69.5 88.6 100.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 307 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 193 O REMARK 620 2 THR B 193 OG1 52.5 REMARK 620 3 ARG B 211 O 61.8 114.3 REMARK 620 4 GLY B 214 O 70.7 81.8 76.5 REMARK 620 5 ASP B 216 OD1 114.0 61.6 174.7 105.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AL9 RELATED DB: PDB REMARK 900 STRUCTURE OF LEISHMANIA MAJOR PEROXIDASE D211R MUTANT (HIGH RES) DBREF 5ALA A 35 303 UNP Q4Q3K2 Q4Q3K2_LEIMA 35 303 DBREF 5ALA B 35 303 UNP Q4Q3K2 Q4Q3K2_LEIMA 35 303 SEQADV 5ALA SER A 34 UNP Q4Q3K2 EXPRESSION TAG SEQADV 5ALA ARG A 211 UNP Q4Q3K2 ASP 211 ENGINEERED MUTATION SEQADV 5ALA SER B 34 UNP Q4Q3K2 EXPRESSION TAG SEQADV 5ALA ARG B 211 UNP Q4Q3K2 ASP 211 ENGINEERED MUTATION SEQRES 1 A 270 SER GLU GLU PRO PRO PHE ASP ILE ARG ALA LEU ARG ALA SEQRES 2 A 270 ASP ILE GLU ASP MET ILE SER GLU LYS LEU GLU LEU GLY SEQRES 3 A 270 PRO SER LEU ILE ARG LEU ALA TRP HIS GLU ALA ALA SER SEQRES 4 A 270 TYR ASP CYS PHE LYS LYS ASP GLY SER PRO ASN SER ALA SEQRES 5 A 270 SER MET ARG PHE LYS PRO GLU CYS LEU TYR ALA GLY ASN SEQRES 6 A 270 LYS GLY LEU ASP ILE PRO ARG LYS ALA LEU GLU THR LEU SEQRES 7 A 270 LYS LYS LYS TYR PRO GLN ILE SER TYR ALA ASP LEU TRP SEQRES 8 A 270 VAL LEU ALA ALA TYR VAL ALA ILE GLU TYR MET GLY GLY SEQRES 9 A 270 PRO THR ILE PRO PHE CYS TRP GLY ARG VAL ASP ALA LYS SEQRES 10 A 270 ASP GLY SER VAL CYS GLY PRO ASP GLY ARG LEU PRO ASP SEQRES 11 A 270 GLY SER LYS THR GLN SER HIS VAL ARG GLU VAL PHE ARG SEQRES 12 A 270 ARG LEU GLY PHE ASN ASP GLN GLU THR VAL ALA LEU ILE SEQRES 13 A 270 GLY ALA HIS THR CYS GLY GLU CYS HIS ILE GLU PHE SER SEQRES 14 A 270 GLY TYR HIS GLY PRO TRP THR HIS ARG LYS ASN GLY PHE SEQRES 15 A 270 ASP ASN SER PHE PHE THR GLN LEU LEU ASP GLU ASP TRP SEQRES 16 A 270 VAL LEU ASN PRO LYS VAL GLU GLN MET GLN LEU MET ASP SEQRES 17 A 270 ARG ALA THR THR LYS LEU MET MET LEU PRO SER ASP VAL SEQRES 18 A 270 CYS LEU LEU LEU ASP PRO SER TYR ARG LYS TYR VAL GLU SEQRES 19 A 270 LEU TYR ALA LYS ASP ASN ASP ARG PHE ASN LYS ASP PHE SEQRES 20 A 270 ALA ASN ALA PHE LYS LYS LEU THR GLU LEU GLY THR ARG SEQRES 21 A 270 ASN LEU HIS LYS ALA PRO ALA SER GLU SER SEQRES 1 B 270 SER GLU GLU PRO PRO PHE ASP ILE ARG ALA LEU ARG ALA SEQRES 2 B 270 ASP ILE GLU ASP MET ILE SER GLU LYS LEU GLU LEU GLY SEQRES 3 B 270 PRO SER LEU ILE ARG LEU ALA TRP HIS GLU ALA ALA SER SEQRES 4 B 270 TYR ASP CYS PHE LYS LYS ASP GLY SER PRO ASN SER ALA SEQRES 5 B 270 SER MET ARG PHE LYS PRO GLU CYS LEU TYR ALA GLY ASN SEQRES 6 B 270 LYS GLY LEU ASP ILE PRO ARG LYS ALA LEU GLU THR LEU SEQRES 7 B 270 LYS LYS LYS TYR PRO GLN ILE SER TYR ALA ASP LEU TRP SEQRES 8 B 270 VAL LEU ALA ALA TYR VAL ALA ILE GLU TYR MET GLY GLY SEQRES 9 B 270 PRO THR ILE PRO PHE CYS TRP GLY ARG VAL ASP ALA LYS SEQRES 10 B 270 ASP GLY SER VAL CYS GLY PRO ASP GLY ARG LEU PRO ASP SEQRES 11 B 270 GLY SER LYS THR GLN SER HIS VAL ARG GLU VAL PHE ARG SEQRES 12 B 270 ARG LEU GLY PHE ASN ASP GLN GLU THR VAL ALA LEU ILE SEQRES 13 B 270 GLY ALA HIS THR CYS GLY GLU CYS HIS ILE GLU PHE SER SEQRES 14 B 270 GLY TYR HIS GLY PRO TRP THR HIS ARG LYS ASN GLY PHE SEQRES 15 B 270 ASP ASN SER PHE PHE THR GLN LEU LEU ASP GLU ASP TRP SEQRES 16 B 270 VAL LEU ASN PRO LYS VAL GLU GLN MET GLN LEU MET ASP SEQRES 17 B 270 ARG ALA THR THR LYS LEU MET MET LEU PRO SER ASP VAL SEQRES 18 B 270 CYS LEU LEU LEU ASP PRO SER TYR ARG LYS TYR VAL GLU SEQRES 19 B 270 LEU TYR ALA LYS ASP ASN ASP ARG PHE ASN LYS ASP PHE SEQRES 20 B 270 ALA ASN ALA PHE LYS LYS LEU THR GLU LEU GLY THR ARG SEQRES 21 B 270 ASN LEU HIS LYS ALA PRO ALA SER GLU SER HET HEM A 305 43 HET K A 306 1 HET CA A 307 1 HET HEM B 305 43 HET K B 307 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM K POTASSIUM ION HETNAM CA CALCIUM ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 K 2(K 1+) FORMUL 5 CA CA 2+ FORMUL 8 HOH *80(H2 O) HELIX 1 1 ASP A 40 GLU A 54 1 15 HELIX 2 2 GLU A 57 ALA A 71 1 15 HELIX 3 3 ALA A 85 PHE A 89 5 5 HELIX 4 4 TYR A 95 LYS A 99 5 5 HELIX 5 5 LEU A 101 LEU A 108 1 8 HELIX 6 6 LEU A 108 TYR A 115 1 8 HELIX 7 7 SER A 119 MET A 135 1 17 HELIX 8 8 THR A 167 GLY A 179 1 13 HELIX 9 9 ASN A 181 GLY A 190 1 10 HELIX 10 10 ALA A 191 CYS A 194 5 4 HELIX 11 11 HIS A 198 GLY A 203 1 6 HELIX 12 12 ASN A 217 GLU A 226 1 10 HELIX 13 13 LEU A 250 THR A 288 1 39 HELIX 14 14 ASP B 40 LYS B 55 1 16 HELIX 15 15 GLU B 57 SER B 72 1 16 HELIX 16 16 ALA B 85 PHE B 89 5 5 HELIX 17 17 PRO B 91 TYR B 95 5 5 HELIX 18 18 TYR B 95 LYS B 99 5 5 HELIX 19 19 LEU B 101 TYR B 115 1 15 HELIX 20 20 SER B 119 MET B 135 1 17 HELIX 21 21 THR B 167 GLY B 179 1 13 HELIX 22 22 ASN B 181 GLY B 190 1 10 HELIX 23 23 ALA B 191 CYS B 194 5 4 HELIX 24 24 HIS B 198 GLY B 203 1 6 HELIX 25 25 ASN B 217 GLU B 226 1 10 HELIX 26 26 LEU B 250 THR B 288 1 39 SHEET 1 AA 2 CYS A 143 TRP A 144 0 SHEET 2 AA 2 HIS A 296 LYS A 297 -1 O HIS A 296 N TRP A 144 SHEET 1 AB 2 GLU A 196 CYS A 197 0 SHEET 2 AB 2 GLY A 206 PRO A 207 -1 O GLY A 206 N CYS A 197 SHEET 1 AC 3 TRP A 228 LEU A 230 0 SHEET 2 AC 3 LEU A 239 ASP A 241 -1 O MET A 240 N VAL A 229 SHEET 3 AC 3 MET A 248 MET A 249 -1 O MET A 249 N LEU A 239 SHEET 1 BA 2 CYS B 143 TRP B 144 0 SHEET 2 BA 2 HIS B 296 LYS B 297 -1 O HIS B 296 N TRP B 144 SHEET 1 BB 2 GLU B 196 CYS B 197 0 SHEET 2 BB 2 GLY B 206 PRO B 207 -1 O GLY B 206 N CYS B 197 SHEET 1 BC 2 TRP B 228 LEU B 230 0 SHEET 2 BC 2 LEU B 239 ASP B 241 -1 O MET B 240 N VAL B 229 LINK O GLU A 69 CA CA A 307 1555 1555 2.49 LINK OG SER A 72 CA CA A 307 1555 1555 2.41 LINK OE2 GLU A 92 CA CA A 307 1555 1555 2.49 LINK NE2 HIS A 192 FE HEM A 305 1555 1555 2.01 LINK O THR A 193 K K A 306 1555 1555 2.83 LINK OG1 THR A 193 K K A 306 1555 1555 3.31 LINK O ARG A 211 K K A 306 1555 1555 2.08 LINK O GLY A 214 K K A 306 1555 1555 2.96 LINK FE HEM A 305 O HOH A2004 1555 1555 2.15 LINK NE2 HIS B 192 FE HEM B 305 1555 1555 1.96 LINK O THR B 193 K K B 307 1555 1555 3.29 LINK OG1 THR B 193 K K B 307 1555 1555 2.81 LINK O ARG B 211 K K B 307 1555 1555 2.91 LINK O GLY B 214 K K B 307 1555 1555 3.12 LINK OD1 ASP B 216 K K B 307 1555 1555 3.04 LINK FE HEM B 305 O HOH B2011 1555 1555 2.24 CISPEP 1 LYS A 90 PRO A 91 0 6.18 CISPEP 2 LYS B 90 PRO B 91 0 5.80 SITE 1 AC1 19 PRO A 60 TRP A 67 PRO A 162 GLY A 164 SITE 2 AC1 19 LEU A 188 ALA A 191 HIS A 192 GLY A 195 SITE 3 AC1 19 GLU A 196 CYS A 197 HIS A 198 PHE A 201 SITE 4 AC1 19 SER A 202 TYR A 204 TRP A 208 LEU A 250 SITE 5 AC1 19 SER A 252 PHE A 280 HOH A2004 SITE 1 AC2 5 THR A 193 THR A 209 ARG A 211 GLY A 214 SITE 2 AC2 5 SER A 218 SITE 1 AC3 4 GLU A 69 SER A 72 SER A 86 GLU A 92 SITE 1 AC4 18 PRO B 60 SER B 61 TRP B 67 PRO B 162 SITE 2 AC4 18 GLY B 164 ALA B 191 HIS B 192 GLY B 195 SITE 3 AC4 18 GLU B 196 CYS B 197 HIS B 198 PHE B 201 SITE 4 AC4 18 SER B 202 TRP B 208 SER B 252 PHE B 284 SITE 5 AC4 18 HOH B2009 HOH B2011 SITE 1 AC5 4 THR B 193 ARG B 211 GLY B 214 ASP B 216 CRYST1 45.880 79.170 179.190 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021796 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005581 0.00000