HEADER SIGNALING PROTEIN 10-MAR-15 5AMK TITLE CEREBLON ISOFORM 4 FROM MAGNETOSPIRILLUM GRYPHISWALDENSE IN MULTIPLE TITLE 2 CONFORMATIONS, HEXAGONAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEREBLON ISOFORM 4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOSPIRILLUM GRYPHISWALDENSE; SOURCE 3 ORGANISM_TAXID: 431944; SOURCE 4 STRAIN: MSR-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALING PROTEIN, TERATOGENICITY, AROMATIC CAGE EXPDTA X-RAY DIFFRACTION AUTHOR M.D.HARTMANN,A.N.LUPAS,B.HERNANDEZ ALVAREZ REVDAT 2 10-JAN-24 5AMK 1 REMARK LINK REVDAT 1 01-JUL-15 5AMK 0 JRNL AUTH M.D.HARTMANN,I.BOICHENKO,M.COLES,A.N.LUPAS, JRNL AUTH 2 B.HERNANDEZ ALVAREZ JRNL TITL STRUCTURAL DYNAMICS OF THE CEREBLON LIGAND BINDING DOMAIN. JRNL REF PLOS ONE V. 10 28342 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26024445 JRNL DOI 10.1371/JOURNAL.PONE.0128342 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 989 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1331 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 2.11000 REMARK 3 B12 (A**2) : -0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.420 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.246 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3525 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3173 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4777 ; 1.952 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7267 ; 1.038 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 7.979 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;32.633 ;21.951 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;19.674 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;14.071 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4073 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 957 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1717 ; 1.759 ; 2.702 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1716 ; 1.758 ; 2.701 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2141 ; 2.846 ; 4.045 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1808 ; 2.144 ; 2.898 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 21 A 47 5 REMARK 3 1 B 21 B 47 5 REMARK 3 1 C 21 C 47 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 158 ; 0.20 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 158 ; 0.19 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 158 ; 0.15 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 278 ; 0.50 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 278 ; 0.79 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 278 ; 0.51 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 158 ; 3.89 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 158 ; 3.56 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 158 ; 2.54 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 278 ; 4.08 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 278 ; 3.75 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 278 ; 3.58 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 58 A 999 5 REMARK 3 1 B 58 B 999 5 REMARK 3 1 C 58 C 999 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 376 ; 0.29 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 B (A): 376 ; 0.22 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 C (A): 376 ; 0.25 ; 0.50 REMARK 3 LOOSE POSITIONAL 2 A (A): 581 ; 0.91 ; 5.00 REMARK 3 LOOSE POSITIONAL 2 B (A): 581 ; 0.87 ; 5.00 REMARK 3 LOOSE POSITIONAL 2 C (A): 581 ; 1.08 ; 5.00 REMARK 3 MEDIUM THERMAL 2 A (A**2): 376 ; 2.83 ; 2.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 376 ; 2.53 ; 2.00 REMARK 3 MEDIUM THERMAL 2 C (A**2): 376 ; 3.40 ; 2.00 REMARK 3 LOOSE THERMAL 2 A (A**2): 581 ; 3.92 ; 10.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 581 ; 4.32 ; 10.00 REMARK 3 LOOSE THERMAL 2 C (A**2): 581 ; 3.84 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 21 A 38 5 REMARK 3 1 B 21 B 38 5 REMARK 3 1 C 21 C 38 5 REMARK 3 1 D 21 D 38 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 A (A): 107 ; 0.18 ; 0.50 REMARK 3 MEDIUM POSITIONAL 3 B (A): 107 ; 0.21 ; 0.50 REMARK 3 MEDIUM POSITIONAL 3 C (A): 107 ; 0.18 ; 0.50 REMARK 3 MEDIUM POSITIONAL 3 D (A): 107 ; 0.32 ; 0.50 REMARK 3 LOOSE POSITIONAL 3 A (A): 205 ; 0.51 ; 5.00 REMARK 3 LOOSE POSITIONAL 3 B (A): 205 ; 0.95 ; 5.00 REMARK 3 LOOSE POSITIONAL 3 C (A): 205 ; 0.51 ; 5.00 REMARK 3 LOOSE POSITIONAL 3 D (A): 205 ; 0.67 ; 5.00 REMARK 3 MEDIUM THERMAL 3 A (A**2): 107 ; 2.33 ; 2.00 REMARK 3 MEDIUM THERMAL 3 B (A**2): 107 ; 2.69 ; 2.00 REMARK 3 MEDIUM THERMAL 3 C (A**2): 107 ; 3.36 ; 2.00 REMARK 3 MEDIUM THERMAL 3 D (A**2): 107 ; 4.43 ; 2.00 REMARK 3 LOOSE THERMAL 3 A (A**2): 205 ; 4.23 ; 10.00 REMARK 3 LOOSE THERMAL 3 B (A**2): 205 ; 3.77 ; 10.00 REMARK 3 LOOSE THERMAL 3 C (A**2): 205 ; 4.22 ; 10.00 REMARK 3 LOOSE THERMAL 3 D (A**2): 205 ; 6.42 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 59 A 71 5 REMARK 3 1 B 59 B 71 5 REMARK 3 1 C 59 C 71 5 REMARK 3 1 D 59 D 71 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 A (A): 70 ; 0.22 ; 0.50 REMARK 3 MEDIUM POSITIONAL 4 B (A): 70 ; 0.28 ; 0.50 REMARK 3 MEDIUM POSITIONAL 4 C (A): 70 ; 0.28 ; 0.50 REMARK 3 MEDIUM POSITIONAL 4 D (A): 70 ; 0.61 ; 0.50 REMARK 3 LOOSE POSITIONAL 4 A (A): 118 ; 0.87 ; 5.00 REMARK 3 LOOSE POSITIONAL 4 B (A): 118 ; 1.56 ; 5.00 REMARK 3 LOOSE POSITIONAL 4 C (A): 118 ; 0.80 ; 5.00 REMARK 3 LOOSE POSITIONAL 4 D (A): 118 ; 1.32 ; 5.00 REMARK 3 MEDIUM THERMAL 4 A (A**2): 70 ; 2.46 ; 2.00 REMARK 3 MEDIUM THERMAL 4 B (A**2): 70 ; 3.18 ; 2.00 REMARK 3 MEDIUM THERMAL 4 C (A**2): 70 ; 2.52 ; 2.00 REMARK 3 MEDIUM THERMAL 4 D (A**2): 70 ; 2.52 ; 2.00 REMARK 3 LOOSE THERMAL 4 A (A**2): 118 ; 4.36 ; 10.00 REMARK 3 LOOSE THERMAL 4 B (A**2): 118 ; 6.42 ; 10.00 REMARK 3 LOOSE THERMAL 4 C (A**2): 118 ; 2.98 ; 10.00 REMARK 3 LOOSE THERMAL 4 D (A**2): 118 ; 4.50 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 86 A 100 5 REMARK 3 1 B 86 B 100 5 REMARK 3 1 C 86 C 100 5 REMARK 3 1 D 86 D 100 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 5 A (A): 87 ; 0.18 ; 0.50 REMARK 3 MEDIUM POSITIONAL 5 B (A): 87 ; 0.20 ; 0.50 REMARK 3 MEDIUM POSITIONAL 5 C (A): 87 ; 0.19 ; 0.50 REMARK 3 MEDIUM POSITIONAL 5 D (A): 87 ; 0.26 ; 0.50 REMARK 3 LOOSE POSITIONAL 5 A (A): 121 ; 0.63 ; 5.00 REMARK 3 LOOSE POSITIONAL 5 B (A): 121 ; 0.48 ; 5.00 REMARK 3 LOOSE POSITIONAL 5 C (A): 121 ; 0.45 ; 5.00 REMARK 3 LOOSE POSITIONAL 5 D (A): 121 ; 0.61 ; 5.00 REMARK 3 MEDIUM THERMAL 5 A (A**2): 87 ; 1.84 ; 2.00 REMARK 3 MEDIUM THERMAL 5 B (A**2): 87 ; 1.93 ; 2.00 REMARK 3 MEDIUM THERMAL 5 C (A**2): 87 ; 3.17 ; 2.00 REMARK 3 MEDIUM THERMAL 5 D (A**2): 87 ; 2.09 ; 2.00 REMARK 3 LOOSE THERMAL 5 A (A**2): 121 ; 3.76 ; 10.00 REMARK 3 LOOSE THERMAL 5 B (A**2): 121 ; 3.19 ; 10.00 REMARK 3 LOOSE THERMAL 5 C (A**2): 121 ; 3.75 ; 10.00 REMARK 3 LOOSE THERMAL 5 D (A**2): 121 ; 3.62 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 109 A 999 5 REMARK 3 1 B 109 B 999 5 REMARK 3 1 C 109 C 999 5 REMARK 3 1 D 109 D 999 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 6 A (A): 87 ; 0.31 ; 0.50 REMARK 3 MEDIUM POSITIONAL 6 B (A): 87 ; 0.28 ; 0.50 REMARK 3 MEDIUM POSITIONAL 6 C (A): 87 ; 0.34 ; 0.50 REMARK 3 MEDIUM POSITIONAL 6 D (A): 87 ; 0.44 ; 0.50 REMARK 3 LOOSE POSITIONAL 6 A (A): 145 ; 0.84 ; 5.00 REMARK 3 LOOSE POSITIONAL 6 B (A): 145 ; 0.60 ; 5.00 REMARK 3 LOOSE POSITIONAL 6 C (A): 145 ; 0.66 ; 5.00 REMARK 3 LOOSE POSITIONAL 6 D (A): 145 ; 1.05 ; 5.00 REMARK 3 MEDIUM THERMAL 6 A (A**2): 87 ; 4.53 ; 2.00 REMARK 3 MEDIUM THERMAL 6 B (A**2): 87 ; 2.25 ; 2.00 REMARK 3 MEDIUM THERMAL 6 C (A**2): 87 ; 3.15 ; 2.00 REMARK 3 MEDIUM THERMAL 6 D (A**2): 87 ; 3.91 ; 2.00 REMARK 3 LOOSE THERMAL 6 A (A**2): 145 ; 5.63 ; 10.00 REMARK 3 LOOSE THERMAL 6 B (A**2): 145 ; 2.35 ; 10.00 REMARK 3 LOOSE THERMAL 6 C (A**2): 145 ; 3.49 ; 10.00 REMARK 3 LOOSE THERMAL 6 D (A**2): 145 ; 5.82 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): -14.3684 -24.7646 3.7597 REMARK 3 T TENSOR REMARK 3 T11: 0.0756 T22: 0.0817 REMARK 3 T33: 0.0860 T12: -0.0518 REMARK 3 T13: -0.0166 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 5.1611 L22: 1.8059 REMARK 3 L33: 5.6660 L12: -1.3138 REMARK 3 L13: 3.3924 L23: -0.5736 REMARK 3 S TENSOR REMARK 3 S11: -0.2184 S12: 0.1831 S13: 0.4608 REMARK 3 S21: -0.0683 S22: 0.0567 S23: -0.2509 REMARK 3 S31: -0.5383 S32: 0.3899 S33: 0.1617 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): -36.5820 -34.0171 -20.9563 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: 0.1627 REMARK 3 T33: 0.0158 T12: -0.0830 REMARK 3 T13: -0.0313 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.8852 L22: 5.2168 REMARK 3 L33: 2.9092 L12: 1.1218 REMARK 3 L13: 0.4421 L23: 1.2928 REMARK 3 S TENSOR REMARK 3 S11: -0.2085 S12: 0.6564 S13: -0.1187 REMARK 3 S21: -0.8042 S22: 0.1854 S23: 0.0472 REMARK 3 S31: 0.0052 S32: 0.1372 S33: 0.0231 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 19 C 151 REMARK 3 ORIGIN FOR THE GROUP (A): -55.8101 -43.8290 3.2301 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.2290 REMARK 3 T33: 0.2811 T12: -0.1124 REMARK 3 T13: 0.1163 T23: -0.1820 REMARK 3 L TENSOR REMARK 3 L11: 5.1334 L22: 4.8112 REMARK 3 L33: 3.7474 L12: 1.3289 REMARK 3 L13: -2.4469 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: 0.3076 S12: -0.7139 S13: 0.7075 REMARK 3 S21: 0.8030 S22: -0.3208 S23: 0.9210 REMARK 3 S31: 0.0885 S32: -0.1486 S33: 0.0132 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 14 D 150 REMARK 3 ORIGIN FOR THE GROUP (A): -39.9557 -17.1625 0.2678 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.0302 REMARK 3 T33: 0.0504 T12: -0.0221 REMARK 3 T13: -0.0252 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.0844 L22: 5.9686 REMARK 3 L33: 2.7108 L12: 0.2750 REMARK 3 L13: -0.6336 L23: 1.0404 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: -0.0372 S13: 0.0909 REMARK 3 S21: 0.3638 S22: 0.0685 S23: 0.1075 REMARK 3 S31: -0.0567 S32: 0.1925 S33: -0.0298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 5AMK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19746 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.970 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.95 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4V2Y REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 64 MM SODIUM CITRATE PH 7.0, 100 MM REMARK 280 HEPES PH 7.0, 10 %(W/V) PEG 5000 MME REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.46333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.92667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.19500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 128.65833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.73167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.46333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 102.92667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 128.65833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 77.19500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.73167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLN A 12 REMARK 465 MET A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 GLY A 18 REMARK 465 ASP A 124 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 ASP B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 GLN B 8 REMARK 465 ASN B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 GLN B 12 REMARK 465 MET B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 ALA B 16 REMARK 465 PRO B 17 REMARK 465 GLY B 18 REMARK 465 ASP B 124 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 LEU C 3 REMARK 465 ASP C 4 REMARK 465 ALA C 5 REMARK 465 GLY C 6 REMARK 465 GLY C 7 REMARK 465 GLN C 8 REMARK 465 ASN C 9 REMARK 465 SER C 10 REMARK 465 THR C 11 REMARK 465 GLN C 12 REMARK 465 MET C 13 REMARK 465 VAL C 14 REMARK 465 LEU C 15 REMARK 465 ALA C 16 REMARK 465 PRO C 17 REMARK 465 GLY C 18 REMARK 465 ASP C 124 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 PRO D 2 REMARK 465 LEU D 3 REMARK 465 ASP D 4 REMARK 465 ALA D 5 REMARK 465 GLY D 6 REMARK 465 GLY D 7 REMARK 465 GLN D 8 REMARK 465 ASN D 9 REMARK 465 SER D 10 REMARK 465 THR D 11 REMARK 465 GLN D 12 REMARK 465 MET D 13 REMARK 465 MET D 40 REMARK 465 GLY D 41 REMARK 465 GLY D 42 REMARK 465 ASP D 43 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 106 CG CD OE1 NE2 REMARK 470 GLN B 106 CG CD OE1 NE2 REMARK 470 GLN C 106 CG CD OE1 NE2 REMARK 470 GLU D 45 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 33 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 20 124.52 89.34 REMARK 500 SER A 32 -163.40 -165.30 REMARK 500 PRO A 39 77.94 -65.06 REMARK 500 GLN A 106 77.16 18.82 REMARK 500 PRO B 39 92.86 -58.70 REMARK 500 GLN B 106 75.22 25.36 REMARK 500 LYS C 81 140.75 -36.09 REMARK 500 GLN C 106 80.89 8.73 REMARK 500 PRO C 122 -150.86 -112.68 REMARK 500 LEU D 38 96.25 -160.31 REMARK 500 GLU D 45 -110.28 -168.98 REMARK 500 ALA D 52 -50.73 -178.16 REMARK 500 SER D 105 -71.57 45.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU D 38 PRO D 39 125.79 REMARK 500 GLU D 45 HIS D 46 147.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 150 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 24 SG REMARK 620 2 CYS A 27 SG 110.6 REMARK 620 3 CYS A 90 SG 110.5 103.9 REMARK 620 4 CYS A 93 SG 101.7 116.2 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 150 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 24 SG REMARK 620 2 CYS B 27 SG 118.1 REMARK 620 3 CYS B 90 SG 112.8 97.8 REMARK 620 4 CYS B 93 SG 104.0 114.8 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 150 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 24 SG REMARK 620 2 CYS C 27 SG 98.6 REMARK 620 3 CYS C 90 SG 106.0 95.7 REMARK 620 4 CYS C 93 SG 101.2 117.8 132.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 150 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 24 SG REMARK 620 2 CYS D 27 SG 113.0 REMARK 620 3 CYS D 90 SG 109.6 103.4 REMARK 620 4 CYS D 93 SG 102.2 119.1 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EF2 A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EF2 B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS C 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 150 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AMH RELATED DB: PDB REMARK 900 CEREBLON ISOFORM 4 FROM MAGNETOSPIRILLUM GRYPHISWALDENSE IN COMPLEX REMARK 900 WITH THALIDOMIDE, TRIGONAL CRYSTAL FORM REMARK 900 RELATED ID: 5AMI RELATED DB: PDB REMARK 900 CEREBLON ISOFORM 4 FROM MAGNETOSPIRILLUM GRYPHISWALDENSE IN COMPLEX REMARK 900 WITH THALIDOMIDE, WASH I STRUCTURE REMARK 900 RELATED ID: 5AMJ RELATED DB: PDB REMARK 900 CEREBLON ISOFORM 4 FROM MAGNETOSPIRILLUM GRYPHISWALDENSE IN COMPLEX REMARK 900 WITH THALIDOMIDE, WASH II STRUCTURE DBREF 5AMK A 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 5AMK B 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 5AMK C 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 5AMK D 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 SEQADV 5AMK ALA A 0 UNP A4TVL0 EXPRESSION TAG SEQADV 5AMK ALA B 0 UNP A4TVL0 EXPRESSION TAG SEQADV 5AMK ALA C 0 UNP A4TVL0 EXPRESSION TAG SEQADV 5AMK ALA D 0 UNP A4TVL0 EXPRESSION TAG SEQRES 1 A 125 ALA MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN SEQRES 2 A 125 MET VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG SEQRES 3 A 125 GLN CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU SEQRES 4 A 125 PRO MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO SEQRES 5 A 125 ALA GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA SEQRES 6 A 125 GLN GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SEQRES 7 A 125 SER TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS SEQRES 8 A 125 GLY GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY SEQRES 9 A 125 GLY SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP SEQRES 10 A 125 ARG LEU ALA GLU GLY PRO ALA ASP SEQRES 1 B 125 ALA MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN SEQRES 2 B 125 MET VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG SEQRES 3 B 125 GLN CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU SEQRES 4 B 125 PRO MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO SEQRES 5 B 125 ALA GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA SEQRES 6 B 125 GLN GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SEQRES 7 B 125 SER TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS SEQRES 8 B 125 GLY GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY SEQRES 9 B 125 GLY SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP SEQRES 10 B 125 ARG LEU ALA GLU GLY PRO ALA ASP SEQRES 1 C 125 ALA MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN SEQRES 2 C 125 MET VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG SEQRES 3 C 125 GLN CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU SEQRES 4 C 125 PRO MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO SEQRES 5 C 125 ALA GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA SEQRES 6 C 125 GLN GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SEQRES 7 C 125 SER TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS SEQRES 8 C 125 GLY GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY SEQRES 9 C 125 GLY SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP SEQRES 10 C 125 ARG LEU ALA GLU GLY PRO ALA ASP SEQRES 1 D 125 ALA MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN SEQRES 2 D 125 MET VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG SEQRES 3 D 125 GLN CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU SEQRES 4 D 125 PRO MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO SEQRES 5 D 125 ALA GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA SEQRES 6 D 125 GLN GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SEQRES 7 D 125 SER TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS SEQRES 8 D 125 GLY GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY SEQRES 9 D 125 GLY SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP SEQRES 10 D 125 ARG LEU ALA GLU GLY PRO ALA ASP HET ZN A 150 1 HET EF2 A 151 19 HET ZN B 150 1 HET EF2 B 151 19 HET ZN C 150 1 HET DMS C 151 4 HET ZN D 150 1 HETNAM ZN ZINC ION HETNAM EF2 S-THALIDOMIDE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 5 ZN 4(ZN 2+) FORMUL 6 EF2 2(C13 H10 N2 O4) FORMUL 10 DMS C2 H6 O S HELIX 1 1 ASP A 35 LEU A 37 5 3 HELIX 2 2 ASP B 35 LEU B 37 5 3 HELIX 3 3 PRO B 39 ASP B 43 5 5 HELIX 4 4 ASP C 35 LEU C 37 5 3 HELIX 5 5 ASP D 35 LEU D 37 5 3 SHEET 1 AA 3 THR A 30 ARG A 33 0 SHEET 2 AA 3 ILE A 21 CYS A 24 -1 O PHE A 22 N ILE A 31 SHEET 3 AA 3 LEU A 118 GLY A 121 -1 O ALA A 119 N ARG A 23 SHEET 1 AB 6 GLU A 45 PHE A 49 0 SHEET 2 AB 6 ILE A 55 PHE A 61 -1 O PHE A 56 N VAL A 48 SHEET 3 AB 6 PHE A 110 ILE A 114 -1 O PHE A 111 N PHE A 61 SHEET 4 AB 6 HIS A 96 GLU A 102 -1 O LEU A 97 N ILE A 114 SHEET 5 AB 6 ASP A 84 CYS A 90 -1 O ASP A 84 N GLU A 102 SHEET 6 AB 6 LEU A 67 SER A 74 -1 O ARG A 68 N LEU A 89 SHEET 1 BA 3 THR B 30 ARG B 33 0 SHEET 2 BA 3 SER B 20 CYS B 24 -1 O PHE B 22 N ILE B 31 SHEET 3 BA 3 LEU B 118 PRO B 122 -1 O ALA B 119 N ARG B 23 SHEET 1 BB 6 GLU B 45 PHE B 49 0 SHEET 2 BB 6 ILE B 55 PHE B 61 -1 O PHE B 56 N VAL B 48 SHEET 3 BB 6 THR B 109 ILE B 114 -1 O PHE B 111 N PHE B 61 SHEET 4 BB 6 HIS B 96 GLU B 102 -1 O LEU B 97 N ILE B 114 SHEET 5 BB 6 ASP B 84 CYS B 90 -1 O ASP B 84 N GLU B 102 SHEET 6 BB 6 LEU B 67 LEU B 69 -1 O ARG B 68 N LEU B 89 SHEET 1 CA 3 THR C 30 ARG C 33 0 SHEET 2 CA 3 ILE C 21 CYS C 24 -1 O PHE C 22 N SER C 32 SHEET 3 CA 3 LEU C 118 GLY C 121 -1 O ALA C 119 N ARG C 23 SHEET 1 CB 6 GLU C 45 PHE C 49 0 SHEET 2 CB 6 ILE C 55 PHE C 61 -1 O PHE C 56 N VAL C 48 SHEET 3 CB 6 THR C 109 ILE C 114 -1 O PHE C 111 N PHE C 61 SHEET 4 CB 6 HIS C 96 GLU C 102 -1 O LEU C 97 N ILE C 114 SHEET 5 CB 6 ASP C 84 CYS C 90 -1 O ASP C 84 N GLU C 102 SHEET 6 CB 6 LEU C 67 SER C 74 -1 O ARG C 68 N LEU C 89 SHEET 1 DA 3 THR D 30 ARG D 33 0 SHEET 2 DA 3 SER D 20 CYS D 24 -1 O PHE D 22 N ILE D 31 SHEET 3 DA 3 LEU D 118 PRO D 122 -1 O ALA D 119 N ARG D 23 SHEET 1 DB 6 VAL D 47 PHE D 49 0 SHEET 2 DB 6 PHE D 56 PHE D 61 -1 O PHE D 56 N PHE D 49 SHEET 3 DB 6 PHE D 110 ILE D 114 -1 O PHE D 111 N PHE D 61 SHEET 4 DB 6 HIS D 96 TYR D 101 -1 O LEU D 97 N ILE D 114 SHEET 5 DB 6 TRP D 85 CYS D 90 -1 O THR D 86 N HIS D 100 SHEET 6 DB 6 LEU D 67 GLY D 71 -1 O ARG D 68 N LEU D 89 LINK SG CYS A 24 ZN ZN A 150 1555 1555 2.21 LINK SG CYS A 27 ZN ZN A 150 1555 1555 2.10 LINK SG CYS A 90 ZN ZN A 150 1555 1555 2.36 LINK SG CYS A 93 ZN ZN A 150 1555 1555 2.24 LINK SG CYS B 24 ZN ZN B 150 1555 1555 2.28 LINK SG CYS B 27 ZN ZN B 150 1555 1555 2.20 LINK SG CYS B 90 ZN ZN B 150 1555 1555 2.22 LINK SG CYS B 93 ZN ZN B 150 1555 1555 2.36 LINK SG CYS C 24 ZN ZN C 150 1555 1555 2.45 LINK SG CYS C 27 ZN ZN C 150 1555 1555 2.32 LINK SG CYS C 90 ZN ZN C 150 1555 1555 2.21 LINK SG CYS C 93 ZN ZN C 150 1555 1555 2.34 LINK SG CYS D 24 ZN ZN D 150 1555 1555 2.27 LINK SG CYS D 27 ZN ZN D 150 1555 1555 2.23 LINK SG CYS D 90 ZN ZN D 150 1555 1555 2.21 LINK SG CYS D 93 ZN ZN D 150 1555 1555 2.38 CISPEP 1 GLN A 106 PRO A 107 0 0.77 CISPEP 2 GLN B 106 PRO B 107 0 -5.67 CISPEP 3 GLN C 106 PRO C 107 0 -8.11 SITE 1 AC1 4 CYS A 24 CYS A 27 CYS A 90 CYS A 93 SITE 1 AC2 8 ASN A 50 PHE A 56 PHE A 77 SER A 78 SITE 2 AC2 8 TRP A 79 TRP A 85 TRP A 99 TYR A 101 SITE 1 AC3 4 CYS B 24 CYS B 27 CYS B 90 CYS B 93 SITE 1 AC4 9 ASN B 50 GLU B 76 PHE B 77 SER B 78 SITE 2 AC4 9 TRP B 79 TRP B 85 TRP B 99 TYR B 101 SITE 3 AC4 9 GLY D 75 SITE 1 AC5 4 CYS C 24 CYS C 27 CYS C 90 CYS C 93 SITE 1 AC6 5 TRP C 79 TRP C 85 TRP C 99 TYR C 101 SITE 2 AC6 5 TRP D 79 SITE 1 AC7 4 CYS D 24 CYS D 27 CYS D 90 CYS D 93 CRYST1 137.860 137.860 154.390 90.00 90.00 120.00 P 61 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007254 0.004188 0.000000 0.00000 SCALE2 0.000000 0.008376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006477 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.437259 0.774496 -0.457121 18.46928 1 MTRIX2 2 -0.335965 -0.330816 -0.881866 -66.62801 1 MTRIX3 2 -0.834225 0.539181 0.115551 -6.11625 1 MTRIX1 3 -0.479629 0.498432 0.722165 -21.55618 1 MTRIX2 3 -0.877357 -0.285722 -0.385497 -84.74525 1 MTRIX3 3 0.014194 -0.818492 0.574343 -33.11204 1 MTRIX1 4 -0.845968 0.085990 0.526255 -44.82836 1 MTRIX2 4 0.533234 0.134801 0.835159 -2.57898 1 MTRIX3 4 0.000876 0.987134 -0.159890 20.00475 1