HEADER PLANT PROTEIN 02-SEP-15 5AMZ TITLE CRYSTAL STRUCTURE OF THAUMATIN PROCESSED WITH THE CRYSTALDIRECT TITLE 2 AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: THAUMATIN I; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THAUMATIN-1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THAUMATOCOCCUS DANIELLII; SOURCE 3 ORGANISM_COMMON: KATEMFE; SOURCE 4 ORGANISM_TAXID: 4621 KEYWDS PLANT PROTEIN, AUTOMATED CRYSTAL HARVESTING, AUTOMATED CRYO-COOLING, KEYWDS 2 CRYSTALDIRECT EXPDTA X-RAY DIFFRACTION AUTHOR U.ZANDER,G.HOFFMANN,I.CORNACIU,F.CIPRIANI,J.A.MARQUEZ REVDAT 3 23-OCT-24 5AMZ 1 REMARK REVDAT 2 20-FEB-19 5AMZ 1 COMPND SOURCE DBREF SEQADV REVDAT 1 20-APR-16 5AMZ 0 JRNL AUTH U.ZANDER,G.HOFFMANN,I.CORNACIU,J.-P.MARQUETTE,G.PAPP, JRNL AUTH 2 C.LANDRET,G.SEROUL,J.SINOIR,M.ROEWER,F.FELISAZ, JRNL AUTH 3 S.RODRIGUEZ-PUENTE,V.MARIAULE,P.MURPHY,M.MATHIEU,F.CIPRIANI, JRNL AUTH 4 J.A.MARQUEZ JRNL TITL AUTOMATED HARVESTING AND PROCESSING OF PROTEIN CRYSTALS JRNL TITL 2 THROUGH LASER PHOTOABLATION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 72 454 2016 JRNL REFN ISSN 0907-4449 JRNL PMID 27050125 JRNL DOI 10.1107/S2059798316000954 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2573 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1545 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.070 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1589 ; 0.024 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1427 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2159 ; 2.237 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3298 ; 0.978 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 205 ; 6.960 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;38.657 ;23.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 241 ;11.027 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.949 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 229 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1834 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 374 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 823 ; 1.719 ; 1.484 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 822 ; 1.653 ; 1.481 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1027 ; 2.513 ; 2.228 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 766 ; 3.168 ; 1.766 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES, REFINED INDIVIDUALLY REMARK 4 REMARK 4 5AMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290064875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50733 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.11850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.75750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.75750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.55925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.75750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.75750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.67775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.75750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.75750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.55925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.75750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.75750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 112.67775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.11850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 TYR A 57 O HOH A 2097 2.05 REMARK 500 SG CYS A 159 O HOH A 2216 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2063 O HOH A 2063 7555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 89 CD GLU A 89 OE1 -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 25 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 59 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 98 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 129 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 PHE A 152 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 171 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 175 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 200 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 200 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 -136.56 51.96 REMARK 500 CYS A 71 72.30 -114.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2053 DISTANCE = 5.83 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AMW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE STRAWBERRY PATHOGENESIS-RELATED 10 (PR-10) REMARK 900 FRA A 2 PROTEIN PROCESSED WITH THE CRYSTALDIRECT AUTOMATED MOUNTING REMARK 900 AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5AMX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEINASE K PROCESSED WITH THE CRYSTALDIRECT REMARK 900 AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5AMY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME PROCESSED WITH THE REMARK 900 CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO- COOLING TECHNOLOGY REMARK 900 RELATED ID: 5AN4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN 8-OXOGUANINE GLYCOSYLASE (OGG1) REMARK 900 PROCESSED WITH THE CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO- REMARK 900 COOLING TECHNOLOGY REMARK 900 RELATED ID: 5AND RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH 2-IMIDAZOL- 1-YL-1H- REMARK 900 BENZIMIDAZOLE PROCESSED WITH THE CRYSTALDIRECT AUTOMATED MOUNTING REMARK 900 AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH 6-METHOXY- 7H-PURINE REMARK 900 PROCESSED WITH THE CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO- REMARK 900 COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH 7-HYDROXY- 4- REMARK 900 (MORPHOLINOMETHYL)CHROMEN-2-ONE PROCESSED WITH THE CRYSTALDIRECT REMARK 900 AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH 6-CHLORO- 7H-PURINE REMARK 900 PROCESSED WITH THE CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO- REMARK 900 COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH N-(9H- PURIN-6-YL) REMARK 900 THIOPHENE-2-CARBOXAMIDE PROCESSED WITH THE CRYSTALDIRECT AUTOMATED REMARK 900 MOUNTING AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 IN COMPLEX WITH 2,4,6- TRIOXO-1-PHENYL- REMARK 900 HEXAHYDROPYRIMIDINE-5-CARBOXAMIDE PROCESSED WITH THE CRYSTALDIRECT REMARK 900 AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VPS34 IN COMPLEX WITH (2S)-8-(( 3R)-3- REMARK 900 METHYLMORPHOLIN-4-YL)-1-(3-METHYL-2-OXO- BUTYL)-2-(TRIFLUOROMETHYL)- REMARK 900 3,4-DIHYDRO-2H-PYRIMIDO(1, 2-A)PYRIMIDIN-6- ONE, PROCESSED WITH THE REMARK 900 CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY REMARK 900 RELATED ID: 5ANO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK2 PROCESSED WITH THE CRYSTALDIRECT REMARK 900 AUTOMATED MOUNTING AND CRYO-COOLING TECHNOLOGY DBREF 5AMZ A 1 206 UNP P02883 THM1_THADA 23 228 SEQADV 5AMZ ASN A 113 UNP P02883 ASP 135 CONFLICT SEQRES 1 A 206 ALA THR PHE GLU ILE VAL ASN ARG CYS SER TYR THR VAL SEQRES 2 A 206 TRP ALA ALA ALA SER LYS GLY ASP ALA ALA LEU ASP ALA SEQRES 3 A 206 GLY GLY ARG GLN LEU ASN SER GLY GLU SER TRP THR ILE SEQRES 4 A 206 ASN VAL GLU PRO GLY THR ASN GLY GLY LYS ILE TRP ALA SEQRES 5 A 206 ARG THR ASP CYS TYR PHE ASP ASP SER GLY SER GLY ILE SEQRES 6 A 206 CYS LYS THR GLY ASP CYS GLY GLY LEU LEU ARG CYS LYS SEQRES 7 A 206 ARG PHE GLY ARG PRO PRO THR THR LEU ALA GLU PHE SER SEQRES 8 A 206 LEU ASN GLN TYR GLY LYS ASP TYR ILE ASP ILE SER ASN SEQRES 9 A 206 ILE LYS GLY PHE ASN VAL PRO MET ASN PHE SER PRO THR SEQRES 10 A 206 THR ARG GLY CYS ARG GLY VAL ARG CYS ALA ALA ASP ILE SEQRES 11 A 206 VAL GLY GLN CYS PRO ALA LYS LEU LYS ALA PRO GLY GLY SEQRES 12 A 206 GLY CYS ASN ASP ALA CYS THR VAL PHE GLN THR SER GLU SEQRES 13 A 206 TYR CYS CYS THR THR GLY LYS CYS GLY PRO THR GLU TYR SEQRES 14 A 206 SER ARG PHE PHE LYS ARG LEU CYS PRO ASP ALA PHE SER SEQRES 15 A 206 TYR VAL LEU ASP LYS PRO THR THR VAL THR CYS PRO GLY SEQRES 16 A 206 SER SER ASN TYR ARG VAL THR PHE CYS PRO THR FORMUL 2 HOH *264(H2 O) HELIX 1 1 ASP A 129 CYS A 134 1 6 HELIX 2 2 PRO A 135 LEU A 138 5 4 HELIX 3 3 ASP A 147 GLN A 153 1 7 HELIX 4 4 THR A 154 CYS A 159 1 6 HELIX 5 5 THR A 167 CYS A 177 1 11 SHEET 1 AA 5 SER A 36 ASN A 40 0 SHEET 2 AA 5 THR A 2 ASN A 7 -1 O PHE A 3 N ILE A 39 SHEET 3 AA 5 TYR A 199 PHE A 203 1 O TYR A 199 N GLU A 4 SHEET 4 AA 5 MET A 112 PRO A 116 -1 O ASN A 113 N THR A 202 SHEET 5 AA 5 VAL A 124 CYS A 126 -1 O VAL A 124 N PHE A 114 SHEET 1 AB 4 ALA A 23 LEU A 31 0 SHEET 2 AB 4 VAL A 13 SER A 18 -1 O VAL A 13 N LEU A 31 SHEET 3 AB 4 GLY A 48 PHE A 58 -1 O LYS A 49 N SER A 18 SHEET 4 AB 4 GLY A 64 THR A 68 -1 O ILE A 65 N TYR A 57 SHEET 1 AC 6 ALA A 23 LEU A 31 0 SHEET 2 AC 6 VAL A 13 SER A 18 -1 O VAL A 13 N LEU A 31 SHEET 3 AC 6 GLY A 48 PHE A 58 -1 O LYS A 49 N SER A 18 SHEET 4 AC 6 LEU A 87 GLN A 94 -1 O ALA A 88 N ILE A 50 SHEET 5 AC 6 LYS A 97 SER A 103 -1 O LYS A 97 N GLN A 94 SHEET 6 AC 6 ALA A 180 PHE A 181 -1 N PHE A 181 O ILE A 102 SHEET 1 AD 6 ALA A 23 LEU A 31 0 SHEET 2 AD 6 VAL A 13 SER A 18 -1 O VAL A 13 N LEU A 31 SHEET 3 AD 6 GLY A 48 PHE A 58 -1 O LYS A 49 N SER A 18 SHEET 4 AD 6 LEU A 87 GLN A 94 -1 O ALA A 88 N ILE A 50 SHEET 5 AD 6 LYS A 97 SER A 103 -1 O LYS A 97 N GLN A 94 SHEET 6 AD 6 VAL A 191 PRO A 194 -1 O VAL A 191 N ILE A 100 SHEET 1 AE 2 GLY A 64 THR A 68 0 SHEET 2 AE 2 GLY A 48 PHE A 58 -1 O THR A 54 N LYS A 67 SHEET 1 AF 2 ALA A 180 PHE A 181 0 SHEET 2 AF 2 LYS A 97 SER A 103 -1 O ILE A 102 N PHE A 181 SSBOND 1 CYS A 9 CYS A 204 1555 1555 2.09 SSBOND 2 CYS A 56 CYS A 66 1555 1555 2.11 SSBOND 3 CYS A 71 CYS A 77 1555 1555 2.05 SSBOND 4 CYS A 121 CYS A 193 1555 1555 2.07 SSBOND 5 CYS A 126 CYS A 177 1555 1555 2.08 SSBOND 6 CYS A 134 CYS A 145 1555 1555 2.10 SSBOND 7 CYS A 149 CYS A 158 1555 1555 2.05 SSBOND 8 CYS A 159 CYS A 164 1555 1555 2.04 CISPEP 1 PRO A 83 PRO A 84 0 8.33 CRYST1 57.515 57.515 150.237 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017387 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006656 0.00000