HEADER RNA BINDING PROTEIN 08-SEP-15 5ANR TITLE STRUCTURE OF A HUMAN 4E-T - DDX6 - CNOT1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MIF4G DOMAIN, UNP RESIDUES 1063-1314; COMPND 5 SYNONYM: CCR4-ASSOCIATED FACTOR 1, NOT1H, NEGATIVE REGULATOR OF COMPND 6 TRANSCRIPTION SUBUNIT 1 HOMOLOG, HNOT1, CNOT1-MIF4G DOMAIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX6; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RECA1 AND RECA2, UNP RESIDUES 95-469; COMPND 12 SYNONYM: ATP-DEPENDENT RNA HELICASE P54, DEAD BOX PROTEIN 6, ONCOGENE COMPND 13 RCK, DDX6; COMPND 14 EC: 3.6.4.13; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TRANSPORTER; COMPND 18 CHAIN: C; COMPND 19 FRAGMENT: UNP RESIDUES 199-239; COMPND 20 SYNONYM: 4E-T, EIF4E TRANSPORTER, EUKARYOTIC TRANSLATION INITIATION COMPND 21 FACTOR 4E NUCLEAR IMPORT FACTOR 1,4ET; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEC_HIS_SUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PEC_HIS_SUMO; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 27 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 28 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PEC_HIS_SUMO KEYWDS RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BASQUIN,S.OEZGUER,E.CONTI REVDAT 3 10-JAN-24 5ANR 1 REMARK REVDAT 2 27-APR-16 5ANR 1 JRNL REVDAT 1 21-OCT-15 5ANR 0 JRNL AUTH S.OZGUR,J.BASQUIN,A.KAMENSKA,W.FILIPOWICZ,N.STANDART,E.CONTI JRNL TITL STRUCTURE OF A HUMAN 4E-T/DDX6/CNOT1 COMPLEX REVEALS THE JRNL TITL 2 DIFFERENT INTERPLAY OF DDX6-BINDING PROTEINS WITH THE JRNL TITL 3 CCR4-NOT COMPLEX. JRNL REF CELL REP. V. 13 703 2015 JRNL REFN ESSN 2211-1247 JRNL PMID 26489469 JRNL DOI 10.1016/J.CELREP.2015.09.033 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 51865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3363 - 6.5243 1.00 3156 163 0.1597 0.1970 REMARK 3 2 6.5243 - 5.1806 1.00 3109 168 0.2016 0.2289 REMARK 3 3 5.1806 - 4.5264 1.00 3154 168 0.1601 0.2002 REMARK 3 4 4.5264 - 4.1128 1.00 3126 165 0.1527 0.1670 REMARK 3 5 4.1128 - 3.8181 1.00 3124 166 0.1646 0.2081 REMARK 3 6 3.8181 - 3.5931 1.00 3149 165 0.1712 0.2245 REMARK 3 7 3.5931 - 3.4132 1.00 3143 169 0.1698 0.2239 REMARK 3 8 3.4132 - 3.2647 1.00 3154 163 0.1812 0.2276 REMARK 3 9 3.2647 - 3.1390 1.00 3121 160 0.1903 0.2208 REMARK 3 10 3.1390 - 3.0307 1.00 3135 166 0.1990 0.2297 REMARK 3 11 3.0307 - 2.9360 1.00 3108 166 0.2015 0.2676 REMARK 3 12 2.9360 - 2.8521 1.00 3167 165 0.2000 0.2509 REMARK 3 13 2.8521 - 2.7770 1.00 3119 166 0.1980 0.2510 REMARK 3 14 2.7770 - 2.7092 1.00 3118 163 0.2017 0.2632 REMARK 3 15 2.7092 - 2.6477 1.00 3114 167 0.2083 0.2219 REMARK 3 16 2.6477 - 2.5913 1.00 3161 165 0.2083 0.2759 REMARK 3 17 2.5913 - 2.5395 1.00 3136 163 0.2182 0.2251 REMARK 3 18 2.5395 - 2.4916 1.00 3165 168 0.2255 0.3120 REMARK 3 19 2.4916 - 2.4471 1.00 3107 162 0.2137 0.2454 REMARK 3 20 2.4471 - 2.4056 1.00 3159 167 0.2071 0.2437 REMARK 3 21 2.4056 - 2.3668 1.00 3121 166 0.2309 0.3090 REMARK 3 22 2.3668 - 2.3304 1.00 3119 163 0.2332 0.2869 REMARK 3 23 2.3304 - 2.2961 1.00 3167 163 0.2528 0.2657 REMARK 3 24 2.2961 - 2.2638 1.00 3107 162 0.2707 0.3228 REMARK 3 25 2.2638 - 2.2332 0.99 3146 168 0.2799 0.3228 REMARK 3 26 2.2332 - 2.2042 0.99 3090 159 0.2911 0.2962 REMARK 3 27 2.2042 - 2.1766 1.00 3102 164 0.2912 0.3212 REMARK 3 28 2.1766 - 2.1504 0.98 3145 165 0.3128 0.3287 REMARK 3 29 2.1504 - 2.1254 0.99 3069 163 0.3418 0.3651 REMARK 3 30 2.1254 - 2.1015 0.89 2814 145 0.3749 0.4395 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5008 REMARK 3 ANGLE : 1.035 6784 REMARK 3 CHIRALITY : 0.039 801 REMARK 3 PLANARITY : 0.005 865 REMARK 3 DIHEDRAL : 14.007 1861 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ANR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290064941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51910 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 1.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CT4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS PH 8.0, 35% MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.88600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.44300 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.44300 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 116.88600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 -0.500000 -0.866025 0.000000 -46.56450 REMARK 350 BIOMT2 1 0.866025 -0.500000 0.000000 80.65208 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -58.44300 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -93.12900 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 58.44300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2133 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1052 REMARK 465 GLY A 1053 REMARK 465 PRO A 1054 REMARK 465 ASP A 1055 REMARK 465 SER A 1056 REMARK 465 MET A 1057 REMARK 465 LYS A 1058 REMARK 465 LYS A 1059 REMARK 465 ASP A 1060 REMARK 465 VAL A 1061 REMARK 465 PRO A 1062 REMARK 465 PRO A 1063 REMARK 465 SER A 1064 REMARK 465 ARG B 92 REMARK 465 SER B 93 REMARK 465 MET B 94 REMARK 465 THR B 395 REMARK 465 ARG B 396 REMARK 465 GLY B 397 REMARK 465 ILE B 398 REMARK 465 ARG B 427 REMARK 465 PHE B 428 REMARK 465 GLY B 429 REMARK 465 HIS B 430 REMARK 465 ASN B 463 REMARK 465 ILE B 464 REMARK 465 ASP B 465 REMARK 465 LYS B 466 REMARK 465 SER B 467 REMARK 465 LEU B 468 REMARK 465 TYR B 469 REMARK 465 ARG C 196 REMARK 465 SER C 197 REMARK 465 MET C 198 REMARK 465 GLY C 199 REMARK 465 ASP C 200 REMARK 465 SER C 201 REMARK 465 LYS C 202 REMARK 465 ARG C 203 REMARK 465 VAL C 204 REMARK 465 PHE C 205 REMARK 465 GLY C 206 REMARK 465 GLU C 207 REMARK 465 ARG C 208 REMARK 465 ARG C 209 REMARK 465 ARG C 210 REMARK 465 ASN C 211 REMARK 465 ASP C 212 REMARK 465 SER C 213 REMARK 465 TYR C 214 REMARK 465 THR C 215 REMARK 465 ASP C 239 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A1065 CG1 CG2 CD1 REMARK 470 THR A1067 OG1 CG2 REMARK 470 ASP A1078 CG OD1 OD2 REMARK 470 GLU A1081 CG CD OE1 OE2 REMARK 470 ARG A1082 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1118 CG CD CE NZ REMARK 470 GLU A1155 CG CD OE1 OE2 REMARK 470 GLU A1218 CG CD OE1 OE2 REMARK 470 GLN A1224 CG CD OE1 NE2 REMARK 470 LYS A1299 CG CD CE NZ REMARK 470 ASP A1300 CG OD1 OD2 REMARK 470 LYS A1301 CG CD CE NZ REMARK 470 LYS A1305 CG CD CE NZ REMARK 470 GLU A1309 CG CD OE1 OE2 REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 THR B 144 OG1 CG2 REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 LYS B 307 CG CD CE NZ REMARK 470 ARG B 319 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 371 CG CD OE1 OE2 REMARK 470 ARG B 381 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 424 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 431 CG CD1 CD2 REMARK 470 SER B 462 OG REMARK 470 GLU C 216 CG CD OE1 OE2 REMARK 470 GLU C 217 CG CD OE1 OE2 REMARK 470 GLU C 218 CG CD OE1 OE2 REMARK 470 SER C 223 OG REMARK 470 THR C 227 OG1 CG2 REMARK 470 GLU C 234 CG CD OE1 OE2 REMARK 470 PHE C 238 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 318 NH2 ARG B 346 2.08 REMARK 500 O HOH B 2037 O HOH B 2038 2.11 REMARK 500 NH2 ARG B 331 O HOH A 2012 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2088 O HOH B 2071 5555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A1300 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1078 6.71 -62.87 REMARK 500 GLU A1081 104.21 -55.96 REMARK 500 ARG A1133 -61.82 -108.02 REMARK 500 THR A1198 -85.57 -120.86 REMARK 500 ASP A1300 -107.64 -88.42 REMARK 500 LYS A1301 95.07 39.49 REMARK 500 ASP A1308 34.47 -97.77 REMARK 500 ASN B 335 -73.69 -71.11 REMARK 500 ALA C 224 49.14 -93.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 1299 ASP A 1300 -89.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN A: QGPDSM IS COMING FROM THE CLEAVAGE SITE REMARK 999 CHAIN B: RSM IS COMING FROM THE CLEAVAGE SITE REMARK 999 CHAIN C: RSM IS COMING FROM THE CLEAVAGE SITE DBREF 5ANR A 1058 1309 UNP A5YKK6 CNOT1_HUMAN 1063 1314 DBREF 5ANR B 95 469 UNP P26196 DDX6_HUMAN 95 469 DBREF 5ANR C 199 239 UNP Q9NRA8 4ET_HUMAN 199 239 SEQADV 5ANR GLN A 1052 UNP A5YKK6 EXPRESSION TAG SEQADV 5ANR GLY A 1053 UNP A5YKK6 EXPRESSION TAG SEQADV 5ANR PRO A 1054 UNP A5YKK6 EXPRESSION TAG SEQADV 5ANR ASP A 1055 UNP A5YKK6 EXPRESSION TAG SEQADV 5ANR SER A 1056 UNP A5YKK6 EXPRESSION TAG SEQADV 5ANR MET A 1057 UNP A5YKK6 EXPRESSION TAG SEQADV 5ANR ARG B 92 UNP P26196 EXPRESSION TAG SEQADV 5ANR SER B 93 UNP P26196 EXPRESSION TAG SEQADV 5ANR MET B 94 UNP P26196 EXPRESSION TAG SEQADV 5ANR ARG C 196 UNP Q9NRA8 EXPRESSION TAG SEQADV 5ANR SER C 197 UNP Q9NRA8 EXPRESSION TAG SEQADV 5ANR MET C 198 UNP Q9NRA8 EXPRESSION TAG SEQRES 1 A 258 GLN GLY PRO ASP SER MET LYS LYS ASP VAL PRO PRO SER SEQRES 2 A 258 ILE ASN THR THR ASN ILE ASP THR LEU LEU VAL ALA THR SEQRES 3 A 258 ASP GLN THR GLU ARG ILE VAL GLU PRO PRO GLU ASN ILE SEQRES 4 A 258 GLN GLU LYS ILE ALA PHE ILE PHE ASN ASN LEU SER GLN SEQRES 5 A 258 SER ASN MET THR GLN LYS VAL GLU GLU LEU LYS GLU THR SEQRES 6 A 258 VAL LYS GLU GLU PHE MET PRO TRP VAL SER GLN TYR LEU SEQRES 7 A 258 VAL MET LYS ARG VAL SER ILE GLU PRO ASN PHE HIS SER SEQRES 8 A 258 LEU TYR SER ASN PHE LEU ASP THR LEU LYS ASN PRO GLU SEQRES 9 A 258 PHE ASN LYS MET VAL LEU ASN GLU THR TYR ARG ASN ILE SEQRES 10 A 258 LYS VAL LEU LEU THR SER ASP LYS ALA ALA ALA ASN PHE SEQRES 11 A 258 SER ASP ARG SER LEU LEU LYS ASN LEU GLY HIS TRP LEU SEQRES 12 A 258 GLY MET ILE THR LEU ALA LYS ASN LYS PRO ILE LEU HIS SEQRES 13 A 258 THR ASP LEU ASP VAL LYS SER LEU LEU LEU GLU ALA TYR SEQRES 14 A 258 VAL LYS GLY GLN GLN GLU LEU LEU TYR VAL VAL PRO PHE SEQRES 15 A 258 VAL ALA LYS VAL LEU GLU SER SER ILE ARG SER VAL VAL SEQRES 16 A 258 PHE ARG PRO PRO ASN PRO TRP THR MET ALA ILE MET ASN SEQRES 17 A 258 VAL LEU ALA GLU LEU HIS GLN GLU HIS ASP LEU LYS LEU SEQRES 18 A 258 ASN LEU LYS PHE GLU ILE GLU VAL LEU CYS LYS ASN LEU SEQRES 19 A 258 ALA LEU ASP ILE ASN GLU LEU LYS PRO GLY ASN LEU LEU SEQRES 20 A 258 LYS ASP LYS ASP ARG LEU LYS ASN LEU ASP GLU SEQRES 1 B 378 ARG SER MET GLY ASN GLU PHE GLU ASP TYR CYS LEU LYS SEQRES 2 B 378 ARG GLU LEU LEU MET GLY ILE PHE GLU MET GLY TRP GLU SEQRES 3 B 378 LYS PRO SER PRO ILE GLN GLU GLU SER ILE PRO ILE ALA SEQRES 4 B 378 LEU SER GLY ARG ASP ILE LEU ALA ARG ALA LYS ASN GLY SEQRES 5 B 378 THR GLY LYS SER GLY ALA TYR LEU ILE PRO LEU LEU GLU SEQRES 6 B 378 ARG LEU ASP LEU LYS LYS ASP ASN ILE GLN ALA MET VAL SEQRES 7 B 378 ILE VAL PRO THR ARG GLU LEU ALA LEU GLN VAL SER GLN SEQRES 8 B 378 ILE CYS ILE GLN VAL SER LYS HIS MET GLY GLY ALA LYS SEQRES 9 B 378 VAL MET ALA THR THR GLY GLY THR ASN LEU ARG ASP ASP SEQRES 10 B 378 ILE MET ARG LEU ASP ASP THR VAL HIS VAL VAL ILE ALA SEQRES 11 B 378 THR PRO GLY ARG ILE LEU ASP LEU ILE LYS LYS GLY VAL SEQRES 12 B 378 ALA LYS VAL ASP HIS VAL GLN MET ILE VAL LEU ASP GLU SEQRES 13 B 378 ALA ASP LYS LEU LEU SER GLN ASP PHE VAL GLN ILE MET SEQRES 14 B 378 GLU ASP ILE ILE LEU THR LEU PRO LYS ASN ARG GLN ILE SEQRES 15 B 378 LEU LEU TYR SER ALA THR PHE PRO LEU SER VAL GLN LYS SEQRES 16 B 378 PHE MET ASN SER HIS LEU GLN LYS PRO TYR GLU ILE ASN SEQRES 17 B 378 LEU MET GLU GLU LEU THR LEU LYS GLY VAL THR GLN TYR SEQRES 18 B 378 TYR ALA TYR VAL THR GLU ARG GLN LYS VAL HIS CYS LEU SEQRES 19 B 378 ASN THR LEU PHE SER ARG LEU GLN ILE ASN GLN SER ILE SEQRES 20 B 378 ILE PHE CYS ASN SER SER GLN ARG VAL GLU LEU LEU ALA SEQRES 21 B 378 LYS LYS ILE SER GLN LEU GLY TYR SER CYS PHE TYR ILE SEQRES 22 B 378 HIS ALA LYS MET ARG GLN GLU HIS ARG ASN ARG VAL PHE SEQRES 23 B 378 HIS ASP PHE ARG ASN GLY LEU CYS ARG ASN LEU VAL CYS SEQRES 24 B 378 THR ASP LEU PHE THR ARG GLY ILE ASP ILE GLN ALA VAL SEQRES 25 B 378 ASN VAL VAL ILE ASN PHE ASP PHE PRO LYS LEU ALA GLU SEQRES 26 B 378 THR TYR LEU HIS ARG ILE GLY ARG SER GLY ARG PHE GLY SEQRES 27 B 378 HIS LEU GLY LEU ALA ILE ASN LEU ILE THR TYR ASP ASP SEQRES 28 B 378 ARG PHE ASN LEU LYS SER ILE GLU GLU GLN LEU GLY THR SEQRES 29 B 378 GLU ILE LYS PRO ILE PRO SER ASN ILE ASP LYS SER LEU SEQRES 30 B 378 TYR SEQRES 1 C 44 ARG SER MET GLY ASP SER LYS ARG VAL PHE GLY GLU ARG SEQRES 2 C 44 ARG ARG ASN ASP SER TYR THR GLU GLU GLU PRO GLU TRP SEQRES 3 C 44 PHE SER ALA GLY PRO THR SER GLN SER GLU THR ILE GLU SEQRES 4 C 44 LEU THR GLY PHE ASP FORMUL 4 HOH *276(H2 O) HELIX 1 1 ILE A 1070 ASP A 1078 1 9 HELIX 2 2 PRO A 1087 ASN A 1100 1 14 HELIX 3 3 ASN A 1105 GLU A 1115 1 11 HELIX 4 4 LYS A 1118 GLU A 1120 5 3 HELIX 5 5 PHE A 1121 ARG A 1133 1 13 HELIX 6 6 GLU A 1137 ASN A 1139 5 3 HELIX 7 7 PHE A 1140 LYS A 1152 1 13 HELIX 8 8 ASN A 1153 THR A 1173 1 21 HELIX 9 9 ASP A 1175 ALA A 1179 5 5 HELIX 10 10 SER A 1182 THR A 1198 1 17 HELIX 11 11 LEU A 1199 ASN A 1202 5 4 HELIX 12 12 ASP A 1211 GLY A 1223 1 13 HELIX 13 13 GLY A 1223 SER A 1240 1 18 HELIX 14 14 SER A 1241 SER A 1244 5 4 HELIX 15 15 ASN A 1251 GLU A 1267 1 17 HELIX 16 16 LYS A 1271 LEU A 1285 1 15 HELIX 17 17 ASP A 1288 LEU A 1292 5 5 HELIX 18 18 ASP A 1302 LEU A 1307 1 6 HELIX 19 19 GLU B 97 CYS B 102 5 6 HELIX 20 20 LYS B 104 MET B 114 1 11 HELIX 21 21 SER B 120 GLY B 133 1 14 HELIX 22 22 GLY B 145 LEU B 158 1 14 HELIX 23 23 THR B 173 SER B 188 1 16 HELIX 24 24 ASN B 204 LEU B 212 1 9 HELIX 25 25 THR B 222 LYS B 232 1 11 HELIX 26 26 GLU B 247 LEU B 252 1 6 HELIX 27 27 PHE B 256 THR B 266 1 11 HELIX 28 28 PRO B 281 LEU B 292 1 12 HELIX 29 29 THR B 317 ARG B 319 5 3 HELIX 30 30 GLN B 320 PHE B 329 1 10 HELIX 31 31 SER B 343 LEU B 357 1 15 HELIX 32 32 ARG B 369 ASN B 382 1 14 HELIX 33 33 LEU B 414 GLY B 423 1 10 HELIX 34 34 THR B 439 ASP B 441 5 3 HELIX 35 35 ASP B 442 LEU B 453 1 12 HELIX 36 36 PRO C 219 ALA C 224 1 6 SHEET 1 BA 7 VAL B 196 THR B 199 0 SHEET 2 BA 7 VAL B 218 ALA B 221 1 O VAL B 218 N MET B 197 SHEET 3 BA 7 ALA B 167 ILE B 170 1 O ALA B 167 N VAL B 219 SHEET 4 BA 7 MET B 242 ASP B 246 1 O MET B 242 N MET B 168 SHEET 5 BA 7 GLN B 272 SER B 277 1 O GLN B 272 N ILE B 243 SHEET 6 BA 7 ILE B 136 ARG B 139 1 O ILE B 136 N LEU B 275 SHEET 7 BA 7 TYR B 296 ASN B 299 1 O TYR B 296 N LEU B 137 SHEET 1 BB 7 CYS B 361 ILE B 364 0 SHEET 2 BB 7 ASN B 387 CYS B 390 1 O ASN B 387 N PHE B 362 SHEET 3 BB 7 GLN B 336 PHE B 340 1 O SER B 337 N LEU B 388 SHEET 4 BB 7 VAL B 403 ASN B 408 1 N ASN B 404 O GLN B 336 SHEET 5 BB 7 LEU B 433 ILE B 438 1 O LEU B 433 N VAL B 406 SHEET 6 BB 7 THR B 310 TYR B 315 1 O THR B 310 N ALA B 434 SHEET 7 BB 7 LYS B 458 PRO B 459 1 O LYS B 458 N TYR B 313 CISPEP 1 PRO A 1249 PRO A 1250 0 8.94 CRYST1 93.129 93.129 175.329 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010738 0.006199 0.000000 0.00000 SCALE2 0.000000 0.012399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005704 0.00000