HEADER TRANSFERASE 14-SEP-15 5AP1 TITLE NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO TITLE 2 KINASE INHIBITOR DRUG RESISTANCE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 519-808; COMPND 5 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE, PYT, COMPND 6 MONOPK, MONOPOLAR SPINDLE KINASE 1; COMPND 7 EC: 2.7.12.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI KEYWDS TRANSFERASE, MPS1, PROTEIN KINASE, MITOSIS, DRUG RESISTANCE EXPDTA X-RAY DIFFRACTION AUTHOR M.D.GURDEN,I.M.WESTWOOD,A.FAISAL,S.NAUD,K.J.CHEUNG,C.MCANDREW,A.WOOD, AUTHOR 2 J.SCHMITT,K.BOXALL,G.MAK,P.WORKMAN,R.BURKE,S.HOELDER,J.BLAGG, AUTHOR 3 R.L.M.VAN MONTFORT,S.LINARDOPOULOS REVDAT 2 10-JAN-24 5AP1 1 REMARK LINK REVDAT 1 23-SEP-15 5AP1 0 JRNL AUTH M.D.GURDEN,I.M.WESTWOOD,A.FAISAL,S.NAUD,K.J.CHEUNG, JRNL AUTH 2 C.MCANDREW,A.WOOD,J.SCHMITT,K.BOXALL,G.MAK,P.WORKMAN, JRNL AUTH 3 R.BURKE,S.HOELDER,J.BLAGG,R.L.M.VAN MONTFORT,S.LINARDOPOULOS JRNL TITL NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE JRNL TITL 2 CELLS TO KINASE INHIBITOR DRUG RESISTANCE. JRNL REF CANCER RES. V. 75 3340 2015 JRNL REFN ISSN 0008-5472 JRNL PMID 26202014 JRNL DOI 10.1158/0008-5472.CAN-14-3272 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1415 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2936 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2363 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2788 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE : 0.2421 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.04 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 148 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2109 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.84050 REMARK 3 B22 (A**2) : -5.58660 REMARK 3 B33 (A**2) : -0.25400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.322 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.141 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.124 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.139 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.123 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2207 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2997 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 740 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 53 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 332 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2207 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 297 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2552 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.94 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.78 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|515 - 561} REMARK 3 ORIGIN FOR THE GROUP (A): 10.3762 -23.8079 -49.5036 REMARK 3 T TENSOR REMARK 3 T11: -0.1839 T22: 0.1452 REMARK 3 T33: -0.1907 T12: 0.0626 REMARK 3 T13: 0.0217 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 8.3155 L22: 7.6271 REMARK 3 L33: 6.7539 L12: 2.5654 REMARK 3 L13: 2.0080 L23: -1.3229 REMARK 3 S TENSOR REMARK 3 S11: -0.1743 S12: 0.5442 S13: -0.1194 REMARK 3 S21: -0.3675 S22: 0.0038 S23: -0.5140 REMARK 3 S31: 0.1667 S32: 0.5442 S33: 0.1706 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|562 - 662} REMARK 3 ORIGIN FOR THE GROUP (A): -2.5435 -22.9621 -38.2949 REMARK 3 T TENSOR REMARK 3 T11: -0.1048 T22: -0.0400 REMARK 3 T33: -0.1244 T12: 0.0026 REMARK 3 T13: -0.0063 T23: 0.0615 REMARK 3 L TENSOR REMARK 3 L11: 5.7682 L22: 0.9309 REMARK 3 L33: 4.2131 L12: -0.6410 REMARK 3 L13: -2.1473 L23: 0.2893 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: 0.3149 S13: 0.0130 REMARK 3 S21: -0.0662 S22: -0.0196 S23: 0.0771 REMARK 3 S31: 0.2393 S32: -0.0306 S33: -0.0191 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|663 - 691} REMARK 3 ORIGIN FOR THE GROUP (A): 1.3324 -9.8858 -41.4764 REMARK 3 T TENSOR REMARK 3 T11: -0.1138 T22: -0.0492 REMARK 3 T33: 0.0378 T12: 0.0353 REMARK 3 T13: -0.0420 T23: 0.0710 REMARK 3 L TENSOR REMARK 3 L11: 1.9631 L22: 1.0736 REMARK 3 L33: 1.7357 L12: 1.1760 REMARK 3 L13: -2.9104 L23: -0.0168 REMARK 3 S TENSOR REMARK 3 S11: 0.1571 S12: -0.0108 S13: 0.5441 REMARK 3 S21: 0.0853 S22: 0.0114 S23: 0.0627 REMARK 3 S31: -0.2068 S32: 0.3749 S33: -0.1684 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|692 - 748} REMARK 3 ORIGIN FOR THE GROUP (A): -9.0423 -5.5620 -29.7569 REMARK 3 T TENSOR REMARK 3 T11: -0.1536 T22: -0.1088 REMARK 3 T33: 0.1344 T12: 0.0623 REMARK 3 T13: 0.0896 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 0.6640 L22: 6.7277 REMARK 3 L33: 2.1048 L12: 2.8877 REMARK 3 L13: -1.3348 L23: -0.0512 REMARK 3 S TENSOR REMARK 3 S11: 0.1609 S12: -0.3339 S13: 0.5442 REMARK 3 S21: 0.2736 S22: -0.0710 S23: 0.3427 REMARK 3 S31: -0.5305 S32: -0.1258 S33: -0.0899 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|749 - 761} REMARK 3 ORIGIN FOR THE GROUP (A): -21.9591 -2.9087 -30.7549 REMARK 3 T TENSOR REMARK 3 T11: -0.2988 T22: 0.1017 REMARK 3 T33: 0.2948 T12: 0.1520 REMARK 3 T13: -0.0474 T23: 0.1499 REMARK 3 L TENSOR REMARK 3 L11: 4.7678 L22: 4.5960 REMARK 3 L33: 1.3516 L12: -2.9104 REMARK 3 L13: -2.3938 L23: 0.7053 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: 0.0020 S13: 0.1540 REMARK 3 S21: 0.1057 S22: 0.1142 S23: 0.1131 REMARK 3 S31: -0.3017 S32: -0.1516 S33: -0.1683 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|762 - 781} REMARK 3 ORIGIN FOR THE GROUP (A): -18.9286 -11.3457 -25.3974 REMARK 3 T TENSOR REMARK 3 T11: -0.2041 T22: 0.1052 REMARK 3 T33: 0.0951 T12: 0.0534 REMARK 3 T13: 0.1211 T23: -0.0748 REMARK 3 L TENSOR REMARK 3 L11: 0.0568 L22: 3.0778 REMARK 3 L33: 2.0545 L12: -2.9104 REMARK 3 L13: -1.7879 L23: 1.9301 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: -0.3286 S13: 0.5399 REMARK 3 S21: 0.3362 S22: 0.0530 S23: 0.3887 REMARK 3 S31: -0.4241 S32: -0.4807 S33: -0.1461 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|782 - 795} REMARK 3 ORIGIN FOR THE GROUP (A): -22.5210 -22.5556 -29.8680 REMARK 3 T TENSOR REMARK 3 T11: -0.3019 T22: 0.2232 REMARK 3 T33: -0.2623 T12: -0.0480 REMARK 3 T13: 0.0244 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 2.4138 L22: 0.9041 REMARK 3 L33: 0.0161 L12: -0.9268 REMARK 3 L13: -0.7263 L23: -2.3563 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.0521 S13: 0.2432 REMARK 3 S21: -0.1983 S22: 0.0625 S23: -0.0870 REMARK 3 S31: -0.0841 S32: -0.4334 S33: -0.0648 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290065026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 41.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 1.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4C4J REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 0.2M MGCL2, 10% (W/V) REMARK 280 PEG4000, CO-CRYSTALLISED WITH 1MM INHIBITOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.34000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.19000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.76500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.34000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.19000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.76500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.34000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.19000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.76500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.34000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.19000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A1801 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 SER A 503 REMARK 465 SER A 504 REMARK 465 GLY A 505 REMARK 465 VAL A 506 REMARK 465 ASP A 507 REMARK 465 LEU A 508 REMARK 465 GLY A 509 REMARK 465 THR A 510 REMARK 465 GLU A 511 REMARK 465 ASN A 512 REMARK 465 LEU A 513 REMARK 465 TYR A 514 REMARK 465 SER A 682 REMARK 465 GLN A 683 REMARK 465 SER A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 ASN A 704 REMARK 465 GLY A 705 REMARK 465 LYS A 706 REMARK 465 SER A 707 REMARK 465 HIS A 796 REMARK 465 PRO A 797 REMARK 465 VAL A 798 REMARK 465 ASN A 799 REMARK 465 GLN A 800 REMARK 465 MET A 801 REMARK 465 ALA A 802 REMARK 465 LYS A 803 REMARK 465 GLY A 804 REMARK 465 THR A 805 REMARK 465 THR A 806 REMARK 465 GLU A 807 REMARK 465 GLU A 808 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 515 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 516 CG CD OE1 NE2 REMARK 470 ARG A 523 CZ NH1 NH2 REMARK 470 LYS A 529 CE NZ REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 LYS A 546 CG CD CE NZ REMARK 470 LYS A 547 CG CD CE NZ REMARK 470 GLU A 559 CG CD OE1 OE2 REMARK 470 GLN A 563 CG CD OE1 NE2 REMARK 470 LYS A 614 CE NZ REMARK 470 LYS A 615 CG CD CE NZ REMARK 470 LYS A 617 CG CD CE NZ REMARK 470 TRP A 622 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 622 CZ3 CH2 REMARK 470 ASP A 657 CG OD1 OD2 REMARK 470 ASN A 669 CG OD1 ND2 REMARK 470 GLN A 672 CD OE1 NE2 REMARK 470 VAL A 678 CG1 CG2 REMARK 470 LYS A 680 CG CD CE NZ REMARK 470 ASP A 681 CG OD1 OD2 REMARK 470 VAL A 684 CG1 CG2 REMARK 470 LYS A 696 CG CD CE NZ REMARK 470 SER A 699 OG REMARK 470 SER A 700 OG REMARK 470 LYS A 708 CG CD CE NZ REMARK 470 SER A 709 OG REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 ILE A 738 CG1 CG2 CD1 REMARK 470 SER A 742 OG REMARK 470 HIS A 745 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 748 CG1 CG2 CD1 REMARK 470 ASN A 751 CG OD1 ND2 REMARK 470 GLU A 753 CD OE1 OE2 REMARK 470 LYS A 762 CG CD CE NZ REMARK 470 LYS A 769 CE NZ REMARK 470 LYS A 777 CG CD CE NZ REMARK 470 THR A 795 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 646 -9.73 69.07 REMARK 500 LYS A 710 -56.25 74.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPO A 675 O3P REMARK 620 2 TPO A 675 O3P 0.0 REMARK 620 3 SEP A 677 O3P 105.4 105.4 REMARK 620 4 SEP A 677 O3P 105.4 105.4 0.0 REMARK 620 5 HOH A2079 O 84.4 84.4 96.4 96.4 REMARK 620 6 HOH A2079 O 86.5 86.5 168.0 168.0 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPO A 675 O2P REMARK 620 2 TPO A 676 O2P 50.2 REMARK 620 3 HOH A2076 O 83.0 108.3 REMARK 620 4 HOH A2080 O 76.7 34.9 93.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPO A 675 O3P REMARK 620 2 SEP A 677 O3P 63.8 REMARK 620 3 SEP A 677 O2P 91.8 42.3 REMARK 620 4 HOH A2078 O 98.8 127.1 94.0 REMARK 620 5 HOH A2081 O 85.7 130.4 172.0 93.9 REMARK 620 6 HOH A2085 O 164.7 118.0 98.6 91.6 82.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O38 A 1796 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1797 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1798 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1799 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AP0 RELATED DB: PDB REMARK 900 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO REMARK 900 KINASE INHIBITOR DRUG RESISTANCE. REMARK 900 RELATED ID: 5AP2 RELATED DB: PDB REMARK 900 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO REMARK 900 KINASE INHIBITOR DRUG RESISTANCE. REMARK 900 RELATED ID: 5AP3 RELATED DB: PDB REMARK 900 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO REMARK 900 KINASE INHIBITOR DRUG RESISTANCE. REMARK 900 RELATED ID: 5AP4 RELATED DB: PDB REMARK 900 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO REMARK 900 KINASE INHIBITOR DRUG RESISTANCE. REMARK 900 RELATED ID: 5AP5 RELATED DB: PDB REMARK 900 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO REMARK 900 KINASE INHIBITOR DRUG RESISTANCE. REMARK 900 RELATED ID: 5AP6 RELATED DB: PDB REMARK 900 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO REMARK 900 KINASE INHIBITOR DRUG RESISTANCE. REMARK 900 RELATED ID: 5AP7 RELATED DB: PDB REMARK 900 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO REMARK 900 KINASE INHIBITOR DRUG RESISTANCE. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE INCLUDING HEXAHISTIDINE TAG IS AS DESCRIBED REMARK 999 IN NAT. CHEM. BIOL. 2010, 6, 259-368. DBREF 5AP1 A 519 808 UNP P33981 TTK_HUMAN 519 808 SEQADV 5AP1 MET A 496 UNP P33981 EXPRESSION TAG SEQADV 5AP1 HIS A 497 UNP P33981 EXPRESSION TAG SEQADV 5AP1 HIS A 498 UNP P33981 EXPRESSION TAG SEQADV 5AP1 HIS A 499 UNP P33981 EXPRESSION TAG SEQADV 5AP1 HIS A 500 UNP P33981 EXPRESSION TAG SEQADV 5AP1 HIS A 501 UNP P33981 EXPRESSION TAG SEQADV 5AP1 HIS A 502 UNP P33981 EXPRESSION TAG SEQADV 5AP1 SER A 503 UNP P33981 EXPRESSION TAG SEQADV 5AP1 SER A 504 UNP P33981 EXPRESSION TAG SEQADV 5AP1 GLY A 505 UNP P33981 EXPRESSION TAG SEQADV 5AP1 VAL A 506 UNP P33981 EXPRESSION TAG SEQADV 5AP1 ASP A 507 UNP P33981 EXPRESSION TAG SEQADV 5AP1 LEU A 508 UNP P33981 EXPRESSION TAG SEQADV 5AP1 GLY A 509 UNP P33981 EXPRESSION TAG SEQADV 5AP1 THR A 510 UNP P33981 EXPRESSION TAG SEQADV 5AP1 GLU A 511 UNP P33981 EXPRESSION TAG SEQADV 5AP1 ASN A 512 UNP P33981 EXPRESSION TAG SEQADV 5AP1 LEU A 513 UNP P33981 EXPRESSION TAG SEQADV 5AP1 TYR A 514 UNP P33981 EXPRESSION TAG SEQADV 5AP1 PHE A 515 UNP P33981 EXPRESSION TAG SEQADV 5AP1 GLN A 516 UNP P33981 EXPRESSION TAG SEQADV 5AP1 SER A 517 UNP P33981 EXPRESSION TAG SEQADV 5AP1 MET A 518 UNP P33981 EXPRESSION TAG SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 313 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER VAL LYS SEQRES 3 A 313 GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SER GLY SEQRES 4 A 313 GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU LYS LYS SEQRES 5 A 313 GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU GLU ALA SEQRES 6 A 313 ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU ILE ALA SEQRES 7 A 313 TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS ILE ILE SEQRES 8 A 313 ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR ILE TYR SEQRES 9 A 313 MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SER TRP SEQRES 10 A 313 LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU ARG LYS SEQRES 11 A 313 SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS THR ILE SEQRES 12 A 313 HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS PRO ALA SEQRES 13 A 313 ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU ILE ASP SEQRES 14 A 313 PHE GLY ILE ALA ASN GLN MET GLN PRO ASP TPO TPO SEP SEQRES 15 A 313 VAL VAL LYS ASP SER GLN VAL GLY TPO VAL ASN TYR MET SEQRES 16 A 313 PRO PRO GLU ALA ILE LYS ASP MET SER SER SER ARG GLU SEQRES 17 A 313 ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SER ASP SEQRES 18 A 313 VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET THR TYR SEQRES 19 A 313 GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN ILE SER SEQRES 20 A 313 LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU ILE GLU SEQRES 21 A 313 PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP VAL LEU SEQRES 22 A 313 LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG ILE SER SEQRES 23 A 313 ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN ILE GLN SEQRES 24 A 313 THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR THR GLU SEQRES 25 A 313 GLU MODRES 5AP1 TPO A 675 THR PHOSPHOTHREONINE MODRES 5AP1 TPO A 676 THR PHOSPHOTHREONINE MODRES 5AP1 SEP A 677 SER PHOSPHOSERINE MODRES 5AP1 TPO A 686 THR PHOSPHOTHREONINE HET TPO A 675 11 HET TPO A 676 11 HET SEP A 677 10 HET TPO A 686 11 HET O38 A1796 32 HET GOL A1797 6 HET GOL A1798 6 HET GOL A1799 6 HET GOL A1800 6 HET MG A1801 1 HET MG A1802 1 HET MG A1803 1 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM O38 6-{[3-(CYANOMETHOXY)-4-(1-METHYL-1H-PYRAZOL-4-YL) HETNAM 2 O38 PHENYL]AMINO}-2-(CYCLOHEXYLAMINO)PYRIDINE-3- HETNAM 3 O38 CARBONITRILE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO 3(C4 H10 N O6 P) FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 O38 C24 H25 N7 O FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 MG 3(MG 2+) FORMUL 10 HOH *128(H2 O) HELIX 1 1 ASP A 561 LEU A 578 1 18 HELIX 2 2 GLN A 579 HIS A 581 5 3 HELIX 3 3 LEU A 609 LYS A 616 1 8 HELIX 4 4 ASP A 620 HIS A 641 1 22 HELIX 5 5 LYS A 649 ALA A 651 5 3 HELIX 6 6 PRO A 691 MET A 698 1 8 HELIX 7 7 SER A 712 GLY A 730 1 19 HELIX 8 8 ASN A 739 ASP A 749 1 11 HELIX 9 9 GLU A 761 LEU A 772 1 12 HELIX 10 10 SER A 781 LEU A 786 1 6 HELIX 11 11 HIS A 788 ILE A 793 1 6 SHEET 1 AA 2 SER A 517 VAL A 520 0 SHEET 2 AA 2 ARG A 523 GLY A 534 -1 O ARG A 523 N VAL A 520 SHEET 1 AB 6 LEU A 588 ILE A 593 0 SHEET 2 AB 6 TYR A 597 MET A 602 -1 O TYR A 599 N GLU A 592 SHEET 3 AB 6 ILE A 549 ASN A 556 -1 O ALA A 551 N MET A 602 SHEET 4 AB 6 SER A 537 LEU A 543 -1 O LYS A 538 N TYR A 554 SHEET 5 AB 6 ARG A 523 GLY A 534 -1 O SER A 526 N LEU A 543 SHEET 6 AB 6 GLN A 672 PRO A 673 1 O GLN A 672 N SER A 533 SHEET 1 AC 6 LEU A 588 ILE A 593 0 SHEET 2 AC 6 TYR A 597 MET A 602 -1 O TYR A 599 N GLU A 592 SHEET 3 AC 6 ILE A 549 ASN A 556 -1 O ALA A 551 N MET A 602 SHEET 4 AC 6 SER A 537 LEU A 543 -1 O LYS A 538 N TYR A 554 SHEET 5 AC 6 ARG A 523 GLY A 534 -1 O SER A 526 N LEU A 543 SHEET 6 AC 6 SER A 517 VAL A 520 -1 O MET A 518 N TYR A 525 SHEET 1 AD 2 GLN A 672 PRO A 673 0 SHEET 2 AD 2 ARG A 523 GLY A 534 1 O SER A 533 N GLN A 672 SHEET 1 AE 3 ILE A 607 ASP A 608 0 SHEET 2 AE 3 PHE A 653 VAL A 656 -1 N ILE A 655 O ILE A 607 SHEET 3 AE 3 MET A 659 LEU A 662 -1 O MET A 659 N VAL A 656 LINK C ASP A 674 N TPO A 675 1555 1555 1.33 LINK C TPO A 675 N TPO A 676 1555 1555 1.34 LINK C TPO A 676 N SEP A 677 1555 1555 1.35 LINK C SEP A 677 N VAL A 678 1555 1555 1.35 LINK C GLY A 685 N TPO A 686 1555 1555 1.34 LINK C TPO A 686 N VAL A 687 1555 1555 1.34 LINK O3P TPO A 675 MG MG A1801 1555 1555 2.01 LINK O3P TPO A 675 MG MG A1801 1555 3554 2.01 LINK O2P TPO A 675 MG MG A1802 1555 1555 2.55 LINK O3P TPO A 675 MG MG A1803 1555 1555 2.26 LINK O2P TPO A 676 MG MG A1802 1555 3554 2.37 LINK O3P SEP A 677 MG MG A1801 1555 1555 2.12 LINK O3P SEP A 677 MG MG A1801 1555 3554 2.12 LINK O3P SEP A 677 MG MG A1803 1555 3554 2.03 LINK O2P SEP A 677 MG MG A1803 1555 1555 1.95 LINK MG MG A1801 O HOH A2079 1555 3554 2.06 LINK MG MG A1801 O HOH A2079 1555 1555 2.06 LINK MG MG A1802 O HOH A2076 1555 1555 2.06 LINK MG MG A1802 O HOH A2080 1555 1555 2.48 LINK MG MG A1803 O HOH A2078 1555 1555 2.24 LINK MG MG A1803 O HOH A2081 1555 1555 2.09 LINK MG MG A1803 O HOH A2085 1555 1555 2.24 SITE 1 AC1 16 ILE A 531 GLN A 541 ALA A 551 MET A 602 SITE 2 AC1 16 CYS A 604 GLY A 605 ASN A 606 ILE A 607 SITE 3 AC1 16 ASP A 608 SER A 611 LEU A 654 ILE A 663 SITE 4 AC1 16 MET A 671 GLN A 672 PRO A 673 HOH A2012 SITE 1 AC2 1 LYS A 538 SITE 1 AC3 3 TYR A 525 ASN A 544 TYR A 550 SITE 1 AC4 6 LYS A 714 LYS A 777 ARG A 779 ILE A 780 SITE 2 AC4 6 GLU A 784 HOH A2123 SITE 1 AC5 5 ASN A 576 ASP A 766 HIS A 788 PRO A 789 SITE 2 AC5 5 HOH A2127 SITE 1 AC6 4 TPO A 675 SEP A 677 MG A1803 HOH A2079 SITE 1 AC7 4 TPO A 675 TPO A 676 HOH A2076 HOH A2080 SITE 1 AC8 6 TPO A 675 SEP A 677 MG A1801 HOH A2078 SITE 2 AC8 6 HOH A2081 HOH A2085 CRYST1 70.680 108.380 115.530 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014148 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008656 0.00000