HEADER OXIDOREDUCTASE 15-SEP-15 5APA TITLE CRYSTAL STRUCTURE OF HUMAN ASPARTATE BETA-HYDROXYLASE ISOFORM A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 562-758; COMPND 5 SYNONYM: ASPARTATE BETA-HYDROXYLASE, ASP BETA-HYDROXYLASE, PEPTIDE-A COMPND 6 SPARTATE BETA-DIOXYGENASE, ASPARTATE BETA-HYDROXYLASE; COMPND 7 EC: 1.14.11.16; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KROJER,G.KOCHAN,I.PFEFFER,M.A.MCDONOUGH,E.PILKA,V.HOZJAN, AUTHOR 2 C.ALLERSTON,J.R.MUNIZ,A.CHAIKUAD,O.GILEADI,K.KAVANAGH,F.VON DELFT, AUTHOR 3 C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,U.OPPERMANN REVDAT 5 23-OCT-24 5APA 1 REMARK LINK REVDAT 4 06-NOV-19 5APA 1 JRNL REVDAT 3 21-FEB-18 5APA 1 AUTHOR REVDAT 2 24-JAN-18 5APA 1 AUTHOR JRNL REVDAT 1 23-SEP-15 5APA 0 SPRSDE 23-SEP-15 5APA 3RCQ JRNL AUTH I.PFEFFER,L.BREWITZ,T.KROJER,S.A.JENSEN,G.T.KOCHAN, JRNL AUTH 2 N.J.KERSHAW,K.S.HEWITSON,L.A.MCNEILL,H.KRAMER,M.MUNZEL, JRNL AUTH 3 R.J.HOPKINSON,U.OPPERMANN,P.A.HANDFORD,M.A.MCDONOUGH, JRNL AUTH 4 C.J.SCHOFIELD JRNL TITL ASPARTATE/ASPARAGINE-BETA-HYDROXYLASE CRYSTAL STRUCTURES JRNL TITL 2 REVEAL AN UNEXPECTED EPIDERMAL GROWTH FACTOR-LIKE DOMAIN JRNL TITL 3 SUBSTRATE DISULFIDE PATTERN. JRNL REF NAT COMMUN V. 10 4910 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31659163 JRNL DOI 10.1038/S41467-019-12711-7 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8684 - 4.4021 1.00 2836 141 0.1291 0.1660 REMARK 3 2 4.4021 - 3.5003 1.00 2735 160 0.1253 0.1444 REMARK 3 3 3.5003 - 3.0597 1.00 2762 129 0.1638 0.1969 REMARK 3 4 3.0597 - 2.7808 1.00 2701 156 0.1616 0.2039 REMARK 3 5 2.7808 - 2.5819 1.00 2723 143 0.1699 0.2297 REMARK 3 6 2.5819 - 2.4300 1.00 2682 161 0.1613 0.1952 REMARK 3 7 2.4300 - 2.3085 1.00 2734 132 0.1788 0.1811 REMARK 3 8 2.3085 - 2.2081 1.00 2691 151 0.1939 0.2333 REMARK 3 9 2.2081 - 2.1232 1.00 2694 126 0.2215 0.2739 REMARK 3 10 2.1232 - 2.0500 1.00 2718 143 0.2495 0.2862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1678 REMARK 3 ANGLE : 0.994 2284 REMARK 3 CHIRALITY : 0.040 241 REMARK 3 PLANARITY : 0.004 297 REMARK 3 DIHEDRAL : 13.749 626 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 563 THROUGH 593 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.3001 33.2373 3.6785 REMARK 3 T TENSOR REMARK 3 T11: 0.3576 T22: 0.3623 REMARK 3 T33: 0.5464 T12: 0.0067 REMARK 3 T13: 0.0146 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.3451 L22: 1.9036 REMARK 3 L33: 2.1873 L12: 1.3849 REMARK 3 L13: 0.9751 L23: 0.1823 REMARK 3 S TENSOR REMARK 3 S11: -0.1489 S12: 0.1686 S13: -0.4697 REMARK 3 S21: -0.0337 S22: 0.1428 S23: -0.2714 REMARK 3 S31: 0.1592 S32: 0.0457 S33: -0.0035 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 594 THROUGH 614 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.7210 56.2006 1.2855 REMARK 3 T TENSOR REMARK 3 T11: 0.4509 T22: 0.4849 REMARK 3 T33: 0.5007 T12: -0.1359 REMARK 3 T13: 0.0048 T23: 0.0714 REMARK 3 L TENSOR REMARK 3 L11: 3.8605 L22: 0.4713 REMARK 3 L33: 2.4049 L12: 1.2169 REMARK 3 L13: -1.7698 L23: -0.1750 REMARK 3 S TENSOR REMARK 3 S11: 0.0773 S12: 0.5995 S13: 0.9389 REMARK 3 S21: -0.3558 S22: 0.2065 S23: -0.3609 REMARK 3 S31: -0.6422 S32: 0.1957 S33: -0.1791 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 615 THROUGH 663 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.4606 49.3207 -0.5467 REMARK 3 T TENSOR REMARK 3 T11: 0.3707 T22: 0.4133 REMARK 3 T33: 0.3924 T12: -0.0895 REMARK 3 T13: -0.0413 T23: 0.0506 REMARK 3 L TENSOR REMARK 3 L11: 2.5350 L22: 1.7774 REMARK 3 L33: 1.1455 L12: 0.6225 REMARK 3 L13: 0.0965 L23: -0.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.2249 S12: 0.5080 S13: 0.2717 REMARK 3 S21: -0.4254 S22: 0.1717 S23: 0.2232 REMARK 3 S31: -0.2837 S32: 0.0901 S33: 0.0322 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 664 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.3481 42.6951 9.6791 REMARK 3 T TENSOR REMARK 3 T11: 0.2664 T22: 0.3241 REMARK 3 T33: 0.3614 T12: -0.0391 REMARK 3 T13: -0.0060 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 2.0410 L22: 1.6734 REMARK 3 L33: 1.0542 L12: 1.0746 REMARK 3 L13: -0.1531 L23: 0.2150 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: -0.1762 S13: -0.1743 REMARK 3 S21: -0.0062 S22: -0.0102 S23: -0.1284 REMARK 3 S31: 0.0573 S32: 0.1075 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5APA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290064892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28746 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 19.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM SODIUM MALATE, 20% PEG3350, 3% REMARK 280 DEXTRAN SULFATE, 20MM NISO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 14.87900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.75800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.75800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 14.87900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 SER A 546 REMARK 465 SER A 547 REMARK 465 GLY A 548 REMARK 465 VAL A 549 REMARK 465 ASP A 550 REMARK 465 LEU A 551 REMARK 465 GLY A 552 REMARK 465 THR A 553 REMARK 465 GLU A 554 REMARK 465 ASN A 555 REMARK 465 LEU A 556 REMARK 465 TYR A 557 REMARK 465 PHE A 558 REMARK 465 GLN A 559 REMARK 465 SER A 560 REMARK 465 MET A 561 REMARK 465 ARG A 562 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 579 CE NZ REMARK 470 LYS A 588 CE NZ REMARK 470 LYS A 607 CG CD CE NZ REMARK 470 ARG A 635 CD NE CZ NH1 NH2 REMARK 470 LYS A 653 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 710 O HOH A 2100 2.12 REMARK 500 O HOH A 2033 O HOH A 2034 2.15 REMARK 500 NH1 ARG A 661 O LEU A 755 2.16 REMARK 500 OD1 ASP A 624 O HOH A 2063 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 583 49.72 -88.39 REMARK 500 ALA A 705 -121.44 56.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1759 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 679 NE2 REMARK 620 2 HIS A 725 NE2 87.1 REMARK 620 3 LMR A1760 C1 128.9 97.3 REMARK 620 4 LMR A1760 O1A 159.1 97.5 30.5 REMARK 620 5 LMR A1760 O1B 99.1 93.7 30.0 60.4 REMARK 620 6 HOH A2056 O 87.1 173.4 88.8 89.1 90.3 REMARK 620 7 HOH A2088 O 102.0 87.4 129.0 98.6 159.0 90.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1759 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMR A 1760 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1761 DBREF 5APA A 562 758 UNP Q12797 ASPH_HUMAN 562 758 SEQADV 5APA MET A 539 UNP Q12797 EXPRESSION TAG SEQADV 5APA HIS A 540 UNP Q12797 EXPRESSION TAG SEQADV 5APA HIS A 541 UNP Q12797 EXPRESSION TAG SEQADV 5APA HIS A 542 UNP Q12797 EXPRESSION TAG SEQADV 5APA HIS A 543 UNP Q12797 EXPRESSION TAG SEQADV 5APA HIS A 544 UNP Q12797 EXPRESSION TAG SEQADV 5APA HIS A 545 UNP Q12797 EXPRESSION TAG SEQADV 5APA SER A 546 UNP Q12797 EXPRESSION TAG SEQADV 5APA SER A 547 UNP Q12797 EXPRESSION TAG SEQADV 5APA GLY A 548 UNP Q12797 EXPRESSION TAG SEQADV 5APA VAL A 549 UNP Q12797 EXPRESSION TAG SEQADV 5APA ASP A 550 UNP Q12797 EXPRESSION TAG SEQADV 5APA LEU A 551 UNP Q12797 EXPRESSION TAG SEQADV 5APA GLY A 552 UNP Q12797 EXPRESSION TAG SEQADV 5APA THR A 553 UNP Q12797 EXPRESSION TAG SEQADV 5APA GLU A 554 UNP Q12797 EXPRESSION TAG SEQADV 5APA ASN A 555 UNP Q12797 EXPRESSION TAG SEQADV 5APA LEU A 556 UNP Q12797 EXPRESSION TAG SEQADV 5APA TYR A 557 UNP Q12797 EXPRESSION TAG SEQADV 5APA PHE A 558 UNP Q12797 EXPRESSION TAG SEQADV 5APA GLN A 559 UNP Q12797 EXPRESSION TAG SEQADV 5APA SER A 560 UNP Q12797 EXPRESSION TAG SEQADV 5APA MET A 561 UNP Q12797 EXPRESSION TAG SEQRES 1 A 220 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 220 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG SER LEU SEQRES 3 A 220 TYR ASN VAL ASN GLY LEU LYS ALA GLN PRO TRP TRP THR SEQRES 4 A 220 PRO LYS GLU THR GLY TYR THR GLU LEU VAL LYS SER LEU SEQRES 5 A 220 GLU ARG ASN TRP LYS LEU ILE ARG ASP GLU GLY LEU ALA SEQRES 6 A 220 VAL MET ASP LYS ALA LYS GLY LEU PHE LEU PRO GLU ASP SEQRES 7 A 220 GLU ASN LEU ARG GLU LYS GLY ASP TRP SER GLN PHE THR SEQRES 8 A 220 LEU TRP GLN GLN GLY ARG ARG ASN GLU ASN ALA CYS LYS SEQRES 9 A 220 GLY ALA PRO LYS THR CYS THR LEU LEU GLU LYS PHE PRO SEQRES 10 A 220 GLU THR THR GLY CYS ARG ARG GLY GLN ILE LYS TYR SER SEQRES 11 A 220 ILE MET HIS PRO GLY THR HIS VAL TRP PRO HIS THR GLY SEQRES 12 A 220 PRO THR ASN CYS ARG LEU ARG MET HIS LEU GLY LEU VAL SEQRES 13 A 220 ILE PRO LYS GLU GLY CYS LYS ILE ARG CYS ALA ASN GLU SEQRES 14 A 220 THR LYS THR TRP GLU GLU GLY LYS VAL LEU ILE PHE ASP SEQRES 15 A 220 ASP SER PHE GLU HIS GLU VAL TRP GLN ASP ALA SER SER SEQRES 16 A 220 PHE ARG LEU ILE PHE ILE VAL ASP VAL TRP HIS PRO GLU SEQRES 17 A 220 LEU THR PRO GLN GLN ARG ARG SER LEU PRO ALA ILE HET NI A1759 1 HET LMR A1760 13 HET EDO A1761 4 HETNAM NI NICKEL (II) ION HETNAM LMR (2S)-2-HYDROXYBUTANEDIOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN LMR L-MALATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NI NI 2+ FORMUL 3 LMR C4 H6 O5 FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *139(H2 O) HELIX 1 1 THR A 577 GLY A 582 1 6 HELIX 2 2 TYR A 583 ASN A 593 1 11 HELIX 3 3 ASN A 593 MET A 605 1 13 HELIX 4 4 ASN A 637 ALA A 644 1 8 HELIX 5 5 ALA A 644 GLU A 652 1 9 HELIX 6 6 PHE A 654 GLY A 659 1 6 HELIX 7 7 THR A 748 LEU A 755 1 8 SHEET 1 AA 7 TRP A 575 TRP A 576 0 SHEET 2 AA 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA 7 ARG A 686 VAL A 694 -1 O ARG A 688 N PHE A 719 SHEET 4 AA 7 ARG A 735 TRP A 743 -1 O LEU A 736 N VAL A 694 SHEET 5 AA 7 GLN A 664 MET A 670 -1 O GLN A 664 N ASP A 741 SHEET 6 AA 7 TRP A 625 GLN A 632 -1 O SER A 626 N ILE A 669 SHEET 7 AA 7 ARG A 635 ARG A 636 1 O ARG A 635 N GLN A 632 SHEET 1 AB 7 TRP A 575 TRP A 576 0 SHEET 2 AB 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AB 7 ARG A 686 VAL A 694 -1 O ARG A 688 N PHE A 719 SHEET 4 AB 7 ARG A 735 TRP A 743 -1 O LEU A 736 N VAL A 694 SHEET 5 AB 7 GLN A 664 MET A 670 -1 O GLN A 664 N ASP A 741 SHEET 6 AB 7 TRP A 625 GLN A 632 -1 O SER A 626 N ILE A 669 SHEET 7 AB 7 LEU A 613 PRO A 614 -1 O LEU A 613 N GLN A 627 SHEET 1 AC 2 ARG A 635 ARG A 636 0 SHEET 2 AC 2 TRP A 625 GLN A 632 1 O GLN A 632 N ARG A 635 SHEET 1 AD 5 ARG A 620 LYS A 622 0 SHEET 2 AD 5 THR A 674 HIS A 679 -1 O HIS A 675 N GLU A 621 SHEET 3 AD 5 HIS A 725 GLN A 729 -1 O HIS A 725 N HIS A 679 SHEET 4 AD 5 CYS A 700 CYS A 704 -1 O LYS A 701 N TRP A 728 SHEET 5 AD 5 GLU A 707 LYS A 709 -1 O GLU A 707 N CYS A 704 SSBOND 1 CYS A 641 CYS A 648 1555 1555 2.04 LINK NE2 HIS A 679 NI NI A1759 1555 1555 2.06 LINK NE2 HIS A 725 NI NI A1759 1555 1555 2.13 LINK NI NI A1759 C1 LMR A1760 1555 1555 2.53 LINK NI NI A1759 O1A LMR A1760 1555 1555 2.21 LINK NI NI A1759 O1B LMR A1760 1555 1555 2.21 LINK NI NI A1759 O HOH A2056 1555 1555 2.15 LINK NI NI A1759 O HOH A2088 1555 1555 2.16 SITE 1 AC1 5 HIS A 679 HIS A 725 LMR A1760 HOH A2056 SITE 2 AC1 5 HOH A2088 SITE 1 AC2 13 TRP A 625 SER A 668 MET A 670 HIS A 679 SITE 2 AC2 13 ARG A 688 HIS A 690 HIS A 725 ARG A 735 SITE 3 AC2 13 ILE A 737 ILE A 739 NI A1759 HOH A2055 SITE 4 AC2 13 HOH A2056 SITE 1 AC3 1 SER A 722 CRYST1 133.221 133.221 44.637 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007506 0.004334 0.000000 0.00000 SCALE2 0.000000 0.008668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022403 0.00000