HEADER DNA BINDING PROTEIN 17-SEP-15 5APW TITLE SEQUENCE MATKDD INSERTED BETWEEN GCN4 ADAPTORS - STRUCTURE T6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 250-277,250-281; COMPND 5 SYNONYM: AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN, ARTIFICIAL COMPND 6 CONSTRUCT; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA BINDING PROTEIN, ALPHA/BETA COILED COIL, BETA LAYER, TRIMER EXPDTA X-RAY DIFFRACTION AUTHOR M.D.HARTMANN,C.T.MENDLER,A.N.LUPAS,B.HERNANDEZ ALVAREZ REVDAT 3 10-JAN-24 5APW 1 REMARK LINK REVDAT 2 22-MAR-17 5APW 1 JRNL REVDAT 1 27-JAN-16 5APW 0 JRNL AUTH M.D.HARTMANN,C.T.MENDLER,J.BASSLER,I.KARAMICHALI, JRNL AUTH 2 O.RIDDERBUSCH,A.N.LUPAS,B.HERNANDEZ ALVAREZ JRNL TITL ALPHA / BETA COILED COILS. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 26771248 JRNL DOI 10.7554/ELIFE.11861 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 23253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1611 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1589 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.694 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1696 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1759 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2282 ; 1.897 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4091 ; 0.885 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 5.029 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;34.756 ;26.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;15.781 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;15.020 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 268 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1839 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 325 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 809 ; 3.308 ; 4.239 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 807 ; 3.251 ; 4.229 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1013 ; 4.107 ; 7.043 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 887 ; 6.541 ; 5.973 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9819 -6.4972 -20.5842 REMARK 3 T TENSOR REMARK 3 T11: 0.0224 T22: 0.0135 REMARK 3 T33: 0.0477 T12: -0.0015 REMARK 3 T13: -0.0102 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 3.4894 L22: 2.6949 REMARK 3 L33: 13.0317 L12: -0.2477 REMARK 3 L13: -2.2024 L23: 3.3867 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: 0.1324 S13: -0.0692 REMARK 3 S21: -0.1058 S22: 0.0583 S23: -0.1419 REMARK 3 S31: 0.1284 S32: 0.1942 S33: -0.0396 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9307 5.6583 28.2627 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: 0.0462 REMARK 3 T33: 0.0710 T12: -0.0049 REMARK 3 T13: -0.0060 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.4833 L22: 1.2461 REMARK 3 L33: 11.3925 L12: -0.2408 REMARK 3 L13: 2.3869 L23: -1.4613 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: -0.1126 S13: 0.0152 REMARK 3 S21: 0.1347 S22: 0.0034 S23: -0.0204 REMARK 3 S31: -0.0352 S32: 0.1967 S33: -0.0465 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8288 -2.1032 -19.9019 REMARK 3 T TENSOR REMARK 3 T11: 0.0086 T22: 0.0220 REMARK 3 T33: 0.0687 T12: -0.0047 REMARK 3 T13: -0.0045 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.8845 L22: 1.8906 REMARK 3 L33: 13.8340 L12: -0.2323 REMARK 3 L13: -1.5431 L23: -1.0933 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: 0.0780 S13: 0.0991 REMARK 3 S21: -0.0863 S22: -0.0318 S23: -0.0844 REMARK 3 S31: -0.0967 S32: 0.1998 S33: 0.0531 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7221 0.8403 27.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.0353 T22: 0.0440 REMARK 3 T33: 0.0789 T12: 0.0068 REMARK 3 T13: -0.0135 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.7045 L22: 1.1617 REMARK 3 L33: 7.4160 L12: 0.1082 REMARK 3 L13: 0.0250 L23: 1.6716 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.0756 S13: -0.0209 REMARK 3 S21: 0.0854 S22: 0.0010 S23: 0.0057 REMARK 3 S31: 0.0837 S32: 0.0068 S33: 0.0103 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 30 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2235 2.5425 -20.6408 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.0110 REMARK 3 T33: 0.0902 T12: 0.0044 REMARK 3 T13: 0.0023 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.6696 L22: 1.1460 REMARK 3 L33: 8.6724 L12: 0.3470 REMARK 3 L13: 1.1995 L23: 1.8759 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0615 S13: 0.0267 REMARK 3 S21: -0.0956 S22: -0.0503 S23: 0.0482 REMARK 3 S31: -0.0219 S32: -0.0490 S33: 0.0541 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 31 C 63 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9920 -3.3718 27.0403 REMARK 3 T TENSOR REMARK 3 T11: 0.0660 T22: 0.0686 REMARK 3 T33: 0.0923 T12: 0.0211 REMARK 3 T13: -0.0130 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.6638 L22: 0.5400 REMARK 3 L33: 7.1757 L12: 0.2315 REMARK 3 L13: -1.0926 L23: -0.6196 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.0523 S13: -0.0277 REMARK 3 S21: 0.0592 S22: -0.0194 S23: 0.0011 REMARK 3 S31: 0.1123 S32: 0.0978 S33: 0.0189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 5APW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290065077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24470 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 34.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.040 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.89 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2WPQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL, 0.1 M HEPES PH 7.5, 30 REMARK 280 %(W/V) PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 13.51000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 LYS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 PRO A -17 REMARK 465 MET A -16 REMARK 465 SER A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 ARG A 66 REMARK 465 MET B -25 REMARK 465 LYS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 PRO B -17 REMARK 465 MET B -16 REMARK 465 SER B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 ASP B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 465 THR B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 64 REMARK 465 GLU B 65 REMARK 465 ARG B 66 REMARK 465 MET C -25 REMARK 465 LYS C -24 REMARK 465 HIS C -23 REMARK 465 HIS C -22 REMARK 465 HIS C -21 REMARK 465 HIS C -20 REMARK 465 HIS C -19 REMARK 465 HIS C -18 REMARK 465 PRO C -17 REMARK 465 MET C -16 REMARK 465 SER C -15 REMARK 465 ASP C -14 REMARK 465 TYR C -13 REMARK 465 ASP C -12 REMARK 465 ILE C -11 REMARK 465 PRO C -10 REMARK 465 THR C -9 REMARK 465 THR C -8 REMARK 465 GLU C -7 REMARK 465 ASN C -6 REMARK 465 LEU C -5 REMARK 465 TYR C -4 REMARK 465 PHE C -3 REMARK 465 GLN C -2 REMARK 465 GLY C -1 REMARK 465 GLY C 64 REMARK 465 GLU C 65 REMARK 465 ARG C 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CD CE NZ REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 LYS C 2 CD CE NZ REMARK 470 LYS C 27 CD CE NZ REMARK 470 GLU C 55 CG CD OE1 OE2 REMARK 470 LYS C 61 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2056 O HOH A 2058 2.12 REMARK 500 NZ LYS A 26 OE1 GLU C 21 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 39 CD GLU B 39 OE1 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 35 CA - CB - CG ANGL. DEV. = -10.8 DEGREES REMARK 500 MET A 35 CG - SD - CE ANGL. DEV. = -19.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1064 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 40 OD1 REMARK 620 2 GLU B 43 OE1 89.4 REMARK 620 3 HOH B2044 O 94.8 86.5 REMARK 620 4 HOH B2046 O 91.6 177.6 91.3 REMARK 620 5 HOH B2047 O 92.1 97.7 171.9 84.4 REMARK 620 6 HOH B2050 O 177.2 92.4 87.5 86.7 85.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE A 1066 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1064 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1067 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5APP RELATED DB: PDB REMARK 900 ACTINOBACILLUS ACTINOMYCETEMCOMITANS OMP100 RESIDUES 133-198 FUSED REMARK 900 TO GCN4 ADAPTORS REMARK 900 RELATED ID: 5APQ RELATED DB: PDB REMARK 900 SEQUENCE IENKAD INSERTED BETWEEN GCN4 ADAPTORS - STRUCTURE A6 REMARK 900 RELATED ID: 5APS RELATED DB: PDB REMARK 900 SEQUENCE IENKKAD INSERTED BETWEEN GCN4 ADAPTORS - STRUCTURE A7 REMARK 900 RELATED ID: 5APT RELATED DB: PDB REMARK 900 SEQUENCE IENKADKAD INSERTED BETWEEN GCN4 ADAPTORS - STRUCTURE A9 REMARK 900 RELATED ID: 5APU RELATED DB: PDB REMARK 900 SEQUENCE IANKEDKAD INSERTED BETWEEN GCN4 ADAPTORS - STRUCTURE A9B REMARK 900 BLACK REMARK 900 RELATED ID: 5APV RELATED DB: PDB REMARK 900 SEQUENCE IANKEDKAD INSERTED BETWEEN GCN4 ADAPTORS - STRUCTURE A9B REMARK 900 GREY REMARK 900 RELATED ID: 5APX RELATED DB: PDB REMARK 900 SEQUENCE MATKDDIAN INSERTED BETWEEN GCN4 ADAPTORS - STRUCTURE T9(6) REMARK 900 RELATED ID: 5APY RELATED DB: PDB REMARK 900 SEQUENCE MATKDDIAN INSERTED BETWEEN GCN4 ADAPTORS - STRUCTURE T9(9) REMARK 900 RELATED ID: 5APZ RELATED DB: PDB REMARK 900 THERMOSINUS CARBOXYDIVORANS NOR1 TCAR0761 RESIDUES 68-101 AND 191- REMARK 900 211 FUSED TO GCN4 ADAPTORS DBREF 5APW A 1 28 UNP P03069 GCN4_YEAST 250 277 DBREF 5APW A 35 66 UNP P03069 GCN4_YEAST 250 281 DBREF 5APW B 1 28 UNP P03069 GCN4_YEAST 250 277 DBREF 5APW B 35 66 UNP P03069 GCN4_YEAST 250 281 DBREF 5APW C 1 28 UNP P03069 GCN4_YEAST 250 277 DBREF 5APW C 35 66 UNP P03069 GCN4_YEAST 250 281 SEQADV 5APW MET A -25 UNP P03069 EXPRESSION TAG SEQADV 5APW LYS A -24 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS A -23 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS A -22 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS A -21 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS A -20 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS A -19 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS A -18 UNP P03069 EXPRESSION TAG SEQADV 5APW PRO A -17 UNP P03069 EXPRESSION TAG SEQADV 5APW MET A -16 UNP P03069 EXPRESSION TAG SEQADV 5APW SER A -15 UNP P03069 EXPRESSION TAG SEQADV 5APW ASP A -14 UNP P03069 EXPRESSION TAG SEQADV 5APW TYR A -13 UNP P03069 EXPRESSION TAG SEQADV 5APW ASP A -12 UNP P03069 EXPRESSION TAG SEQADV 5APW ILE A -11 UNP P03069 EXPRESSION TAG SEQADV 5APW PRO A -10 UNP P03069 EXPRESSION TAG SEQADV 5APW THR A -9 UNP P03069 EXPRESSION TAG SEQADV 5APW THR A -8 UNP P03069 EXPRESSION TAG SEQADV 5APW GLU A -7 UNP P03069 EXPRESSION TAG SEQADV 5APW ASN A -6 UNP P03069 EXPRESSION TAG SEQADV 5APW LEU A -5 UNP P03069 EXPRESSION TAG SEQADV 5APW TYR A -4 UNP P03069 EXPRESSION TAG SEQADV 5APW PHE A -3 UNP P03069 EXPRESSION TAG SEQADV 5APW GLN A -2 UNP P03069 EXPRESSION TAG SEQADV 5APW GLY A -1 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS A 0 UNP P03069 EXPRESSION TAG SEQADV 5APW VAL A 15 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 5APW MET A 29 UNP P03069 LINKER SEQADV 5APW ALA A 30 UNP P03069 LINKER SEQADV 5APW THR A 31 UNP P03069 LINKER SEQADV 5APW LYS A 32 UNP P03069 LINKER SEQADV 5APW ASP A 33 UNP P03069 LINKER SEQADV 5APW ASP A 34 UNP P03069 LINKER SEQADV 5APW VAL A 49 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 5APW MET B -25 UNP P03069 EXPRESSION TAG SEQADV 5APW LYS B -24 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS B -23 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS B -22 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS B -21 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS B -20 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS B -19 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS B -18 UNP P03069 EXPRESSION TAG SEQADV 5APW PRO B -17 UNP P03069 EXPRESSION TAG SEQADV 5APW MET B -16 UNP P03069 EXPRESSION TAG SEQADV 5APW SER B -15 UNP P03069 EXPRESSION TAG SEQADV 5APW ASP B -14 UNP P03069 EXPRESSION TAG SEQADV 5APW TYR B -13 UNP P03069 EXPRESSION TAG SEQADV 5APW ASP B -12 UNP P03069 EXPRESSION TAG SEQADV 5APW ILE B -11 UNP P03069 EXPRESSION TAG SEQADV 5APW PRO B -10 UNP P03069 EXPRESSION TAG SEQADV 5APW THR B -9 UNP P03069 EXPRESSION TAG SEQADV 5APW THR B -8 UNP P03069 EXPRESSION TAG SEQADV 5APW GLU B -7 UNP P03069 EXPRESSION TAG SEQADV 5APW ASN B -6 UNP P03069 EXPRESSION TAG SEQADV 5APW LEU B -5 UNP P03069 EXPRESSION TAG SEQADV 5APW TYR B -4 UNP P03069 EXPRESSION TAG SEQADV 5APW PHE B -3 UNP P03069 EXPRESSION TAG SEQADV 5APW GLN B -2 UNP P03069 EXPRESSION TAG SEQADV 5APW GLY B -1 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS B 0 UNP P03069 EXPRESSION TAG SEQADV 5APW VAL B 15 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 5APW MET B 29 UNP P03069 LINKER SEQADV 5APW ALA B 30 UNP P03069 LINKER SEQADV 5APW THR B 31 UNP P03069 LINKER SEQADV 5APW LYS B 32 UNP P03069 LINKER SEQADV 5APW ASP B 33 UNP P03069 LINKER SEQADV 5APW ASP B 34 UNP P03069 LINKER SEQADV 5APW VAL B 49 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 5APW MET C -25 UNP P03069 EXPRESSION TAG SEQADV 5APW LYS C -24 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS C -23 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS C -22 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS C -21 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS C -20 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS C -19 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS C -18 UNP P03069 EXPRESSION TAG SEQADV 5APW PRO C -17 UNP P03069 EXPRESSION TAG SEQADV 5APW MET C -16 UNP P03069 EXPRESSION TAG SEQADV 5APW SER C -15 UNP P03069 EXPRESSION TAG SEQADV 5APW ASP C -14 UNP P03069 EXPRESSION TAG SEQADV 5APW TYR C -13 UNP P03069 EXPRESSION TAG SEQADV 5APW ASP C -12 UNP P03069 EXPRESSION TAG SEQADV 5APW ILE C -11 UNP P03069 EXPRESSION TAG SEQADV 5APW PRO C -10 UNP P03069 EXPRESSION TAG SEQADV 5APW THR C -9 UNP P03069 EXPRESSION TAG SEQADV 5APW THR C -8 UNP P03069 EXPRESSION TAG SEQADV 5APW GLU C -7 UNP P03069 EXPRESSION TAG SEQADV 5APW ASN C -6 UNP P03069 EXPRESSION TAG SEQADV 5APW LEU C -5 UNP P03069 EXPRESSION TAG SEQADV 5APW TYR C -4 UNP P03069 EXPRESSION TAG SEQADV 5APW PHE C -3 UNP P03069 EXPRESSION TAG SEQADV 5APW GLN C -2 UNP P03069 EXPRESSION TAG SEQADV 5APW GLY C -1 UNP P03069 EXPRESSION TAG SEQADV 5APW HIS C 0 UNP P03069 EXPRESSION TAG SEQADV 5APW VAL C 15 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 5APW MET C 29 UNP P03069 LINKER SEQADV 5APW ALA C 30 UNP P03069 LINKER SEQADV 5APW THR C 31 UNP P03069 LINKER SEQADV 5APW LYS C 32 UNP P03069 LINKER SEQADV 5APW ASP C 33 UNP P03069 LINKER SEQADV 5APW ASP C 34 UNP P03069 LINKER SEQADV 5APW VAL C 49 UNP P03069 ASN 264 ENGINEERED MUTATION SEQRES 1 A 92 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 A 92 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY HIS SEQRES 3 A 92 MET LYS GLN LEU GLU ASP LYS VAL GLU GLU LEU LEU SER SEQRES 4 A 92 LYS VAL TYR HIS LEU GLU ASN GLU VAL ALA ARG LEU LYS SEQRES 5 A 92 LYS LEU MET ALA THR LYS ASP ASP MET LYS GLN LEU GLU SEQRES 6 A 92 ASP LYS VAL GLU GLU LEU LEU SER LYS VAL TYR HIS LEU SEQRES 7 A 92 GLU ASN GLU VAL ALA ARG LEU LYS LYS LEU VAL GLY GLU SEQRES 8 A 92 ARG SEQRES 1 B 92 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 B 92 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY HIS SEQRES 3 B 92 MET LYS GLN LEU GLU ASP LYS VAL GLU GLU LEU LEU SER SEQRES 4 B 92 LYS VAL TYR HIS LEU GLU ASN GLU VAL ALA ARG LEU LYS SEQRES 5 B 92 LYS LEU MET ALA THR LYS ASP ASP MET LYS GLN LEU GLU SEQRES 6 B 92 ASP LYS VAL GLU GLU LEU LEU SER LYS VAL TYR HIS LEU SEQRES 7 B 92 GLU ASN GLU VAL ALA ARG LEU LYS LYS LEU VAL GLY GLU SEQRES 8 B 92 ARG SEQRES 1 C 92 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 C 92 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY HIS SEQRES 3 C 92 MET LYS GLN LEU GLU ASP LYS VAL GLU GLU LEU LEU SER SEQRES 4 C 92 LYS VAL TYR HIS LEU GLU ASN GLU VAL ALA ARG LEU LYS SEQRES 5 C 92 LYS LEU MET ALA THR LYS ASP ASP MET LYS GLN LEU GLU SEQRES 6 C 92 ASP LYS VAL GLU GLU LEU LEU SER LYS VAL TYR HIS LEU SEQRES 7 C 92 GLU ASN GLU VAL ALA ARG LEU LYS LYS LEU VAL GLY GLU SEQRES 8 C 92 ARG HET URE A1066 4 HET CL A1067 1 HET CA B1064 1 HETNAM URE UREA HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 4 URE C H4 N2 O FORMUL 5 CL CL 1- FORMUL 6 CA CA 2+ FORMUL 7 HOH *190(H2 O) HELIX 1 1 GLY A -1 MET A 29 1 31 HELIX 2 2 THR A 31 GLY A 64 1 34 HELIX 3 3 HIS B 0 MET B 29 1 30 HELIX 4 4 THR B 31 VAL B 63 1 33 HELIX 5 5 HIS C 0 MET C 29 1 30 HELIX 6 6 THR C 31 VAL C 63 1 33 LINK OD1 ASP B 40 CA CA B1064 1555 1555 2.31 LINK OE1 GLU B 43 CA CA B1064 1555 1555 2.23 LINK CA CA B1064 O HOH B2044 1555 1555 2.41 LINK CA CA B1064 O HOH B2046 1555 1555 2.38 LINK CA CA B1064 O HOH B2047 1555 1555 2.37 LINK CA CA B1064 O HOH B2050 1555 1555 2.43 SITE 1 AC1 4 TYR A 16 GLU A 19 ASN A 20 HOH A2081 SITE 1 AC2 6 ASP B 40 GLU B 43 HOH B2044 HOH B2046 SITE 2 AC2 6 HOH B2047 HOH B2050 SITE 1 AC3 1 LYS A 41 CRYST1 34.200 27.020 101.040 90.00 93.93 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029240 0.000000 0.002009 0.00000 SCALE2 0.000000 0.037010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009920 0.00000