HEADER HYDROLASE 24-SEP-15 5ARD TITLE COOPERATIVE BIO-METALLIC SELECTIVITY IN A TAILORED PROTEASE ENABLES TITLE 2 CREATION OF A C-C CROSS-COUPLING HECKASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBTILISIN SAVINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MATURE PEPTIDE CHAIN, RESIDUES 1-269; COMPND 5 SYNONYM: ALKALINE PROTEASE, SUBTILISIN; COMPND 6 EC: 3.4.21.62; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LENTUS; SOURCE 3 ORGANISM_TAXID: 1467; SOURCE 4 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1423 KEYWDS HYDROLASE, PROTEASE, SUBTILISIN, CATALYSIS, PALLADIUM, METALLOENZYME, KEYWDS 2 HECK REACTION, CROSS-COUPLING EXPDTA X-RAY DIFFRACTION AUTHOR M.SHARMA,A.DIAZ-RODRIGUEZ,W.A.OFFEN,M.E.PALM-ESPLING,A.PORDEA, AUTHOR 2 M.R.WORMALD,M.MCDONOUGH,G.J.DAVIES,B.G.DAVIS REVDAT 3 23-OCT-24 5ARD 1 REMARK REVDAT 2 10-JAN-24 5ARD 1 REMARK LINK REVDAT 1 14-SEP-16 5ARD 0 JRNL AUTH M.SHARMA,A.DIAZ-RODRIGUEZ,W.A.OFFEN,M.E.PALM-ESPLING, JRNL AUTH 2 A.PORDEA,M.R.WORMALD,M.MCDONOUGH,G.J.DAVIES,B.G.DAVIS JRNL TITL COOPERATIVE BIO-METALLIC SELECTIVITY IN A TAILORED PROTEASE JRNL TITL 2 ENABLES CREATION OF A C-C CROSS-COUPLING HECKASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1805 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2450 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.80000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.299 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2016 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1871 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2754 ; 1.768 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4291 ; 1.060 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 5.823 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;38.236 ;24.730 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 278 ;11.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.510 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2405 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 461 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1106 ; 1.084 ; 1.162 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1105 ; 1.056 ; 1.160 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1383 ; 1.609 ; 1.738 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 910 ; 1.742 ; 1.353 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THERE IS COMPLETE ELECTRON DENSITY FOR THE RING OF REMARK 3 THE BIPYRIDINE ADJACENT TO CYS217 AT A CONTOUR LEVEL OF 1 RMSD, REMARK 3 AND FOR THE SECOND RING AT 0.7 RSMD, WITH THE BIPYRIDINE REMARK 3 MODELLED AT AN OCCUPANCY OF 0.5. THERE IS ADDITIONAL PLANAR REMARK 3 SHAPED DENSITY, WHICH HAS BEEN UNABLE TO BE MODELLED, BETWEEN REMARK 3 CYS217 AND HIS64. THE NICKEL ION AND COORDINATED WATERS HAVE REMARK 3 BEEN MODELLED AT AN OCCUPANCY OF 0.5. THERE ARE 2 REGIONS OF REMARK 3 UNMODELLED DENSITY, BETWEEN THE SIDE CHAINS OF ASN155, PHE189 REMARK 3 AND ASN218, AND BETWEEN THE SIDE CHAINS OF SER56, THR57 AND REMARK 3 GLN59. THERE IS ONLY ONE CA ION, ALTHOUGH THE GENERAL ANNOTATION REMARK 3 FOR UNIPROT ENTRY P29600 COMMENTS THAT 2 CALCIUM IONS BIND PER REMARK 3 SUBUNIT. REMARK 4 REMARK 4 5ARD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290065159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35362 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 47.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1GCI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG 3350, 100 MM AMMONIUM SULFATE, REMARK 280 0.1 M TRIS PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.02950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.33000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.33000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.02950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 -149.62 -161.52 REMARK 500 ALA A 73 25.81 -144.32 REMARK 500 ASN A 77 -151.97 -155.15 REMARK 500 VAL A 81 -162.81 -123.93 REMARK 500 SER A 259 109.10 -163.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1276 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 2 OE1 REMARK 620 2 ASP A 41 OD2 153.5 REMARK 620 3 ASP A 41 OD1 152.6 53.4 REMARK 620 4 LEU A 75 O 78.7 107.5 86.2 REMARK 620 5 ASN A 77 OD1 78.6 126.3 78.5 89.3 REMARK 620 6 ILE A 79 O 89.8 88.2 99.3 163.3 76.5 REMARK 620 7 VAL A 81 O 77.9 76.6 124.9 88.6 156.3 100.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1280 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EI3 A1279 N6 REMARK 620 2 EI3 A1279 N15 81.3 REMARK 620 3 HOH A2178 O 87.8 91.6 REMARK 620 4 HOH A2223 O 101.0 174.3 83.3 REMARK 620 5 HOH A2224 O 94.2 92.4 175.7 92.6 REMARK 620 6 HOH A2225 O 175.2 97.5 96.8 80.7 81.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EI3 A 1279 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AQE RELATED DB: PDB REMARK 900 COOPERATIVE BIO-METALLIC SELECTIVITY IN A TAILORED PROTEASE ENABLES REMARK 900 CREATION OF A C-C CROSS-COUPLING HECKASE REMARK 900 RELATED ID: 5ARB RELATED DB: PDB REMARK 900 COOPERATIVE BIO-METALLIC SELECTIVITY IN A TAILORED PROTEASE ENABLES REMARK 900 CREATION OF A C-C CROSS-COUPLING HECKASE REMARK 900 RELATED ID: 5ARC RELATED DB: PDB REMARK 900 COOPERATIVE BIO-METALLIC SELECTIVITY IN A TAILORED PROTEASE ENABLES REMARK 900 CREATION OF A C-C CROSS-COUPLING HECKASE REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE IS SAME FOR DEPOSITED COORDINATES, APART FROM REMARK 999 LEU217 WHICH IS MUTATED TO CYS, BUT NUMBERING IS NON- REMARK 999 CONTIGUOUS AS IT IS BASED ON ALIGNMENT TO AN HOMOLOGOUS REMARK 999 SECTION OF UNIPROT SEQUENCE P00782 FOR SUBTILISIN BPN' REMARK 999 FROM BACILLUS AMYLOLIQUEFACIENS, RESIDUES 108 TO 382. THUS REMARK 999 THERE ARE NO RESIDUES 36, 58, 158-159 OR 163-164. DBREF 5ARD A 1 275 UNP P29600 SUBS_BACLE 1 269 SEQADV 5ARD CYS A 217 UNP P29600 LEU 211 ENGINEERED MUTATION SEQRES 1 A 269 ALA GLN SER VAL PRO TRP GLY ILE SER ARG VAL GLN ALA SEQRES 2 A 269 PRO ALA ALA HIS ASN ARG GLY LEU THR GLY SER GLY VAL SEQRES 3 A 269 LYS VAL ALA VAL LEU ASP THR GLY ILE SER THR HIS PRO SEQRES 4 A 269 ASP LEU ASN ILE ARG GLY GLY ALA SER PHE VAL PRO GLY SEQRES 5 A 269 GLU PRO SER THR GLN ASP GLY ASN GLY HIS GLY THR HIS SEQRES 6 A 269 VAL ALA GLY THR ILE ALA ALA LEU ASN ASN SER ILE GLY SEQRES 7 A 269 VAL LEU GLY VAL ALA PRO SER ALA GLU LEU TYR ALA VAL SEQRES 8 A 269 LYS VAL LEU GLY ALA SER GLY SER GLY SER VAL SER SER SEQRES 9 A 269 ILE ALA GLN GLY LEU GLU TRP ALA GLY ASN ASN GLY MET SEQRES 10 A 269 HIS VAL ALA ASN LEU SER LEU GLY SER PRO SER PRO SER SEQRES 11 A 269 ALA THR LEU GLU GLN ALA VAL ASN SER ALA THR SER ARG SEQRES 12 A 269 GLY VAL LEU VAL VAL ALA ALA SER GLY ASN SER GLY ALA SEQRES 13 A 269 GLY SER ILE SER TYR PRO ALA ARG TYR ALA ASN ALA MET SEQRES 14 A 269 ALA VAL GLY ALA THR ASP GLN ASN ASN ASN ARG ALA SER SEQRES 15 A 269 PHE SER GLN TYR GLY ALA GLY LEU ASP ILE VAL ALA PRO SEQRES 16 A 269 GLY VAL ASN VAL GLN SER THR TYR PRO GLY SER THR TYR SEQRES 17 A 269 ALA SER CYS ASN GLY THR SER MET ALA THR PRO HIS VAL SEQRES 18 A 269 ALA GLY ALA ALA ALA LEU VAL LYS GLN LYS ASN PRO SER SEQRES 19 A 269 TRP SER ASN VAL GLN ILE ARG ASN HIS LEU LYS ASN THR SEQRES 20 A 269 ALA THR SER LEU GLY SER THR ASN LEU TYR GLY SER GLY SEQRES 21 A 269 LEU VAL ASN ALA GLU ALA ALA THR ARG HET CA A1276 1 HET GOL A1277 6 HET GOL A1278 6 HET EI3 A1279 14 HET NI A1280 1 HET SO4 A1281 5 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM EI3 5-METHYL-2-(5-METHYLPYRIDIN-2-YL)PYRIDINE HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 EI3 C12 H12 N2 FORMUL 6 NI NI 2+ FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *226(H2 O) HELIX 1 1 PRO A 5 VAL A 11 1 7 HELIX 2 2 GLN A 12 ARG A 19 1 8 HELIX 3 3 GLY A 63 ALA A 74 1 12 HELIX 4 4 SER A 103 ASN A 117 1 15 HELIX 5 5 SER A 132 ARG A 145 1 14 HELIX 6 6 GLY A 219 ASN A 238 1 20 HELIX 7 7 SER A 242 ALA A 254 1 13 HELIX 8 8 SER A 259 GLY A 264 1 6 HELIX 9 9 ASN A 269 THR A 274 1 6 SHEET 1 AA 7 ILE A 44 SER A 49 0 SHEET 2 AA 7 GLU A 89 LYS A 94 1 O LEU A 90 N ARG A 45 SHEET 3 AA 7 LYS A 27 ASP A 32 1 O VAL A 28 N TYR A 91 SHEET 4 AA 7 VAL A 121 LEU A 124 1 O VAL A 121 N ALA A 29 SHEET 5 AA 7 LEU A 148 ALA A 152 1 O LEU A 148 N ALA A 122 SHEET 6 AA 7 ALA A 174 THR A 180 1 O MET A 175 N ALA A 151 SHEET 7 AA 7 LEU A 196 PRO A 201 1 N ASP A 197 O ALA A 176 SHEET 1 AB 2 VAL A 205 TYR A 209 0 SHEET 2 AB 2 THR A 213 CYS A 217 -1 O THR A 213 N TYR A 209 LINK SG CYS A 217 C1 EI3 A1279 1555 1555 1.79 LINK OE1 GLN A 2 CA CA A1276 1555 1555 2.39 LINK OD2 ASP A 41 CA CA A1276 1555 1555 2.51 LINK OD1 ASP A 41 CA CA A1276 1555 1555 2.41 LINK O LEU A 75 CA CA A1276 1555 1555 2.33 LINK OD1 ASN A 77 CA CA A1276 1555 1555 2.40 LINK O ILE A 79 CA CA A1276 1555 1555 2.35 LINK O VAL A 81 CA CA A1276 1555 1555 2.35 LINK N6 EI3 A1279 NI NI A1280 1555 1555 2.13 LINK N15 EI3 A1279 NI NI A1280 1555 1555 2.07 LINK NI NI A1280 O HOH A2178 1555 1555 2.17 LINK NI NI A1280 O HOH A2223 1555 1555 2.02 LINK NI NI A1280 O HOH A2224 1555 1555 1.90 LINK NI NI A1280 O HOH A2225 1555 1555 2.17 CISPEP 1 TYR A 167 PRO A 168 0 9.43 SITE 1 AC1 6 GLN A 2 ASP A 41 LEU A 75 ASN A 77 SITE 2 AC1 6 ILE A 79 VAL A 81 SITE 1 AC2 6 VAL A 104 SER A 132 ALA A 133 THR A 134 SITE 2 AC2 6 HOH A2177 HOH A2226 SITE 1 AC3 5 SER A 101 GLY A 102 LEU A 126 GLY A 127 SITE 2 AC3 5 HOH A2113 SITE 1 AC4 5 TRP A 241 GLN A 245 ASN A 248 HOH A2201 SITE 2 AC4 5 HOH A2222 SITE 1 AC5 5 EI3 A1279 HOH A2178 HOH A2223 HOH A2224 SITE 2 AC5 5 HOH A2225 SITE 1 AC6 7 ALA A 172 TYR A 209 SER A 216 CYS A 217 SITE 2 AC6 7 NI A1280 HOH A2178 HOH A2224 CRYST1 52.059 61.280 74.660 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019209 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013394 0.00000