HEADER METAL BINDING PROTEIN/HYDROLASE 27-MAY-15 5AUP TITLE CRYSTAL STRUCTURE OF THE HYPAB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE HYDROGENASE NICKEL INCORPORATION PROTEIN HYPA; COMPND 3 CHAIN: A, H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ATPASE INVOLVED IN CHROMOSOME PARTITIONING, PARA/MIND COMPND 7 FAMILY, MRP HOMOLOG; COMPND 8 CHAIN: B, I; COMPND 9 SYNONYM: HYPB; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARAENSIS (STRAIN ATCC BAA-918 SOURCE 3 / JCM 12380 / KOD1); SOURCE 4 ORGANISM_TAXID: 69014; SOURCE 5 STRAIN: ATCC BAA-918 / JCM 12380 / KOD1; SOURCE 6 GENE: HYPA, TK2008; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARAENSIS (STRAIN ATCC BAA-918 SOURCE 12 / JCM 12380 / KOD1); SOURCE 13 ORGANISM_TAXID: 69014; SOURCE 14 STRAIN: ATCC BAA-918 / JCM 12380 / KOD1; SOURCE 15 GENE: TK2007; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROTEIN COMPLEX, METALLOCHAPERONE, METAL BINDING PROTEIN-HYDROLASE KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.WATANABE,T.KAWASHIMA,Y.NISHITANI,K.MIKI REVDAT 4 08-NOV-23 5AUP 1 LINK REVDAT 3 19-FEB-20 5AUP 1 SOURCE KEYWDS JRNL REMARK REVDAT 2 08-JUL-15 5AUP 1 JRNL REVDAT 1 24-JUN-15 5AUP 0 JRNL AUTH S.WATANABE,T.KAWASHIMA,Y.NISHITANI,T.KANAI,T.WADA,K.INABA, JRNL AUTH 2 H.ATOMI,T.IMANAKA,K.MIKI JRNL TITL STRUCTURAL BASIS OF A NI ACQUISITION CYCLE FOR [NIFE] JRNL TITL 2 HYDROGENASE BY NI-METALLOCHAPERONE HYPA AND ITS ENHANCER JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 7701 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26056269 JRNL DOI 10.1073/PNAS.1503102112 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5422 - 6.6765 1.00 2754 155 0.1553 0.1807 REMARK 3 2 6.6765 - 5.3017 1.00 2791 140 0.1970 0.2701 REMARK 3 3 5.3017 - 4.6322 1.00 2769 149 0.1651 0.2001 REMARK 3 4 4.6322 - 4.2090 1.00 2749 155 0.1587 0.2166 REMARK 3 5 4.2090 - 3.9075 1.00 2796 145 0.1829 0.2152 REMARK 3 6 3.9075 - 3.6772 1.00 2746 133 0.2084 0.2481 REMARK 3 7 3.6772 - 3.4931 1.00 2801 151 0.2296 0.3004 REMARK 3 8 3.4931 - 3.3411 1.00 2779 149 0.2525 0.2880 REMARK 3 9 3.3411 - 3.2125 1.00 2736 154 0.2977 0.3732 REMARK 3 10 3.2125 - 3.1017 0.96 2664 127 0.3197 0.3793 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5969 REMARK 3 ANGLE : 0.527 8077 REMARK 3 CHIRALITY : 0.020 938 REMARK 3 PLANARITY : 0.003 1026 REMARK 3 DIHEDRAL : 12.371 2155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURAL FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN F_PLUS/MINUS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5AUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1300000011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31382 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.22000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3A43 AND 3VX3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, PEG 3350, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 60.97250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.96550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.97250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.96550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 137 REMARK 465 GLY A 138 REMARK 465 SER A 139 REMARK 465 ARG B 191 REMARK 465 SER B 192 REMARK 465 GLU B 193 REMARK 465 GLN B 194 REMARK 465 LEU B 195 REMARK 465 ASP B 196 REMARK 465 ASP B 197 REMARK 465 GLU B 198 REMARK 465 GLU H 136 REMARK 465 GLY H 137 REMARK 465 GLY H 138 REMARK 465 SER H 139 REMARK 465 SER I 192 REMARK 465 GLU I 193 REMARK 465 GLN I 194 REMARK 465 LEU I 195 REMARK 465 ASP I 196 REMARK 465 ASP I 197 REMARK 465 GLU I 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 19 CG CD OE1 NE2 REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 GLU B 206 CG CD OE1 OE2 REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 GLU B 231 CG CD OE1 OE2 REMARK 470 ARG H 20 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 27 CD CE NZ REMARK 470 LYS H 83 CG CD CE NZ REMARK 470 LYS H 86 CG CD CE NZ REMARK 470 LYS H 88 CG CD CE NZ REMARK 470 LYS H 132 CG CD CE NZ REMARK 470 GLU I 16 CG CD OE1 OE2 REMARK 470 LYS I 72 CG CD CE NZ REMARK 470 GLU I 73 CG CD OE1 OE2 REMARK 470 ARG I 79 CG CD NE CZ NH1 NH2 REMARK 470 ARG I 191 CG CD NE CZ NH1 NH2 REMARK 470 LYS I 199 CG CD CE NZ REMARK 470 LYS I 203 CG CD CE NZ REMARK 470 GLU I 206 CG CD OE1 OE2 REMARK 470 GLU I 230 CG CD OE1 OE2 REMARK 470 GLU I 231 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3G ACP B 301 O HOH B 401 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 77 18.01 58.59 REMARK 500 VAL A 85 32.00 -93.03 REMARK 500 PRO A 111 1.37 -69.00 REMARK 500 SER B 26 -23.67 -149.52 REMARK 500 PRO B 71 74.06 -65.83 REMARK 500 ASP B 78 83.35 -159.83 REMARK 500 ASP B 124 -137.42 54.69 REMARK 500 ASP H 90 -158.52 -132.77 REMARK 500 SER I 26 -18.67 -150.64 REMARK 500 LYS I 90 100.00 -67.30 REMARK 500 ASP I 124 -119.74 52.73 REMARK 500 LEU I 137 45.72 -108.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 73 SG REMARK 620 2 CYS A 76 SG 131.5 REMARK 620 3 CYS A 110 SG 112.3 104.7 REMARK 620 4 CYS A 113 SG 103.2 102.4 96.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 34 OG REMARK 620 2 ACP B 301 O3G 175.1 REMARK 620 3 ACP B 301 O2B 79.4 96.1 REMARK 620 4 HOH B 401 O 126.8 58.1 145.5 REMARK 620 5 HOH B 402 O 66.9 111.8 91.0 118.6 REMARK 620 6 HOH B 403 O 74.5 107.0 84.6 82.4 141.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H 73 SG REMARK 620 2 CYS H 76 SG 113.9 REMARK 620 3 CYS H 110 SG 105.6 110.3 REMARK 620 4 CYS H 113 SG 111.2 107.2 108.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG I 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER I 34 OG REMARK 620 2 ACP I 301 O3G 169.1 REMARK 620 3 ACP I 301 O1B 75.5 94.5 REMARK 620 4 HOH I 401 O 101.5 89.4 163.3 REMARK 620 5 HOH I 402 O 72.8 111.8 88.3 75.2 REMARK 620 6 HOH I 403 O 78.7 96.5 85.4 110.3 151.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN H 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP I 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG I 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A43 RELATED DB: PDB REMARK 900 3A43 IS A ISOLATED STRUCTURE OF THE SAME PROTEIN. REMARK 900 RELATED ID: 3VX3 RELATED DB: PDB REMARK 900 3VX3 IS A ISOLATED STRUCTURE OF THE SAME PROTEIN. REMARK 900 RELATED ID: 5AUN RELATED DB: PDB REMARK 900 RELATED ID: 5AUO RELATED DB: PDB REMARK 900 RELATED ID: 5AUQ RELATED DB: PDB DBREF 5AUP A 1 139 UNP Q5JIH3 HYPA_THEKO 1 139 DBREF 5AUP B 1 248 UNP Q5JIH4 Q5JIH4_THEKO 1 248 DBREF 5AUP H 1 139 UNP Q5JIH3 HYPA_THEKO 1 139 DBREF 5AUP I 1 248 UNP Q5JIH4 Q5JIH4_THEKO 1 248 SEQRES 1 A 139 MET HIS GLU TRP ALA LEU ALA ASP ALA ILE VAL ARG THR SEQRES 2 A 139 VAL LEU ASP TYR ALA GLN ARG GLU GLY ALA SER ARG VAL SEQRES 3 A 139 LYS ALA VAL ARG VAL VAL LEU GLY GLU LEU GLN ASP VAL SEQRES 4 A 139 ALA GLU ASP ILE VAL LYS PHE ALA MET GLU GLN LEU PHE SEQRES 5 A 139 ALA GLY THR ILE ALA GLU GLY ALA GLU ILE GLU PHE VAL SEQRES 6 A 139 GLU GLU GLU ALA VAL PHE LYS CYS ARG ASN CYS ASN TYR SEQRES 7 A 139 GLU TRP LYS LEU LYS GLU VAL LYS ASP LYS PHE ASP GLU SEQRES 8 A 139 ARG ILE LYS GLU ASP ILE HIS PHE ILE PRO GLU VAL VAL SEQRES 9 A 139 HIS ALA PHE LEU ALA CYS PRO LYS CYS GLY SER HIS ASP SEQRES 10 A 139 PHE GLU VAL VAL LYS GLY ARG GLY VAL TYR VAL ALA GLY SEQRES 11 A 139 ILE LYS ILE GLU LYS GLU GLY GLY SER SEQRES 1 B 248 MET ASN ALA ILE ASP PRO ARG GLU ILE ALA ILE ASN ALA SEQRES 2 B 248 ARG LEU GLU GLY VAL LYS ARG ILE ILE PRO VAL VAL SER SEQRES 3 B 248 GLY LYS GLY GLY VAL GLY LYS SER LEU VAL SER THR THR SEQRES 4 B 248 LEU ALA LEU VAL LEU ALA GLU LYS GLY TYR ARG VAL GLY SEQRES 5 B 248 LEU LEU ASP LEU ASP PHE HIS GLY ALA SER ASP HIS VAL SEQRES 6 B 248 ILE LEU GLY PHE GLU PRO LYS GLU PHE PRO GLU GLU ASP SEQRES 7 B 248 ARG GLY VAL VAL PRO PRO THR VAL HIS GLY ILE LYS PHE SEQRES 8 B 248 MET THR ILE ALA TYR TYR THR GLU ASP ARG PRO THR PRO SEQRES 9 B 248 LEU ARG GLY LYS GLU ILE SER ASP ALA LEU ILE GLU LEU SEQRES 10 B 248 LEU THR ILE THR ARG TRP ASP GLU LEU ASP TYR LEU VAL SEQRES 11 B 248 ILE ASP MET PRO PRO GLY LEU GLY ASP GLN LEU LEU ASP SEQRES 12 B 248 VAL LEU ARG PHE LEU LYS ARG GLY GLU PHE LEU VAL VAL SEQRES 13 B 248 ALA THR PRO SER LYS LEU SER LEU ASN VAL VAL ARG LYS SEQRES 14 B 248 LEU ILE GLU LEU LEU LYS GLU GLU GLY HIS LYS VAL ILE SEQRES 15 B 248 GLY VAL VAL GLU ASN MET LYS LEU ARG SER GLU GLN LEU SEQRES 16 B 248 ASP ASP GLU LYS ASP VAL GLU LYS LEU ALA GLU GLU PHE SEQRES 17 B 248 GLY VAL PRO TYR LEU VAL GLY ILE PRO PHE TYR PRO ASP SEQRES 18 B 248 LEU ASP ALA LYS VAL GLY ASN VAL GLU GLU LEU MET LYS SEQRES 19 B 248 THR GLU PHE ALA GLY LYS VAL ARG GLU LEU ALA GLY ARG SEQRES 20 B 248 LEU SEQRES 1 H 139 MET HIS GLU TRP ALA LEU ALA ASP ALA ILE VAL ARG THR SEQRES 2 H 139 VAL LEU ASP TYR ALA GLN ARG GLU GLY ALA SER ARG VAL SEQRES 3 H 139 LYS ALA VAL ARG VAL VAL LEU GLY GLU LEU GLN ASP VAL SEQRES 4 H 139 ALA GLU ASP ILE VAL LYS PHE ALA MET GLU GLN LEU PHE SEQRES 5 H 139 ALA GLY THR ILE ALA GLU GLY ALA GLU ILE GLU PHE VAL SEQRES 6 H 139 GLU GLU GLU ALA VAL PHE LYS CYS ARG ASN CYS ASN TYR SEQRES 7 H 139 GLU TRP LYS LEU LYS GLU VAL LYS ASP LYS PHE ASP GLU SEQRES 8 H 139 ARG ILE LYS GLU ASP ILE HIS PHE ILE PRO GLU VAL VAL SEQRES 9 H 139 HIS ALA PHE LEU ALA CYS PRO LYS CYS GLY SER HIS ASP SEQRES 10 H 139 PHE GLU VAL VAL LYS GLY ARG GLY VAL TYR VAL ALA GLY SEQRES 11 H 139 ILE LYS ILE GLU LYS GLU GLY GLY SER SEQRES 1 I 248 MET ASN ALA ILE ASP PRO ARG GLU ILE ALA ILE ASN ALA SEQRES 2 I 248 ARG LEU GLU GLY VAL LYS ARG ILE ILE PRO VAL VAL SER SEQRES 3 I 248 GLY LYS GLY GLY VAL GLY LYS SER LEU VAL SER THR THR SEQRES 4 I 248 LEU ALA LEU VAL LEU ALA GLU LYS GLY TYR ARG VAL GLY SEQRES 5 I 248 LEU LEU ASP LEU ASP PHE HIS GLY ALA SER ASP HIS VAL SEQRES 6 I 248 ILE LEU GLY PHE GLU PRO LYS GLU PHE PRO GLU GLU ASP SEQRES 7 I 248 ARG GLY VAL VAL PRO PRO THR VAL HIS GLY ILE LYS PHE SEQRES 8 I 248 MET THR ILE ALA TYR TYR THR GLU ASP ARG PRO THR PRO SEQRES 9 I 248 LEU ARG GLY LYS GLU ILE SER ASP ALA LEU ILE GLU LEU SEQRES 10 I 248 LEU THR ILE THR ARG TRP ASP GLU LEU ASP TYR LEU VAL SEQRES 11 I 248 ILE ASP MET PRO PRO GLY LEU GLY ASP GLN LEU LEU ASP SEQRES 12 I 248 VAL LEU ARG PHE LEU LYS ARG GLY GLU PHE LEU VAL VAL SEQRES 13 I 248 ALA THR PRO SER LYS LEU SER LEU ASN VAL VAL ARG LYS SEQRES 14 I 248 LEU ILE GLU LEU LEU LYS GLU GLU GLY HIS LYS VAL ILE SEQRES 15 I 248 GLY VAL VAL GLU ASN MET LYS LEU ARG SER GLU GLN LEU SEQRES 16 I 248 ASP ASP GLU LYS ASP VAL GLU LYS LEU ALA GLU GLU PHE SEQRES 17 I 248 GLY VAL PRO TYR LEU VAL GLY ILE PRO PHE TYR PRO ASP SEQRES 18 I 248 LEU ASP ALA LYS VAL GLY ASN VAL GLU GLU LEU MET LYS SEQRES 19 I 248 THR GLU PHE ALA GLY LYS VAL ARG GLU LEU ALA GLY ARG SEQRES 20 I 248 LEU HET ZN A 201 1 HET ACP B 301 31 HET MG B 302 1 HET ZN H 201 1 HET ACP I 301 31 HET MG I 302 1 HETNAM ZN ZINC ION HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 5 ZN 2(ZN 2+) FORMUL 6 ACP 2(C11 H18 N5 O12 P3) FORMUL 7 MG 2(MG 2+) FORMUL 11 HOH *7(H2 O) HELIX 1 AA1 HIS A 2 GLU A 21 1 20 HELIX 2 AA2 ALA A 40 ALA A 53 1 14 HELIX 3 AA3 LYS A 83 PHE A 89 5 7 HELIX 4 AA4 ASP A 90 ILE A 100 1 11 HELIX 5 AA5 PRO A 101 PHE A 107 5 7 HELIX 6 AA6 ARG B 7 ILE B 9 5 3 HELIX 7 AA7 ALA B 10 LEU B 15 1 6 HELIX 8 AA8 GLY B 32 LYS B 47 1 16 HELIX 9 AA9 SER B 62 LEU B 67 1 6 HELIX 10 AB1 ARG B 106 THR B 121 1 16 HELIX 11 AB2 GLY B 138 LEU B 148 1 11 HELIX 12 AB3 SER B 160 GLY B 178 1 19 HELIX 13 AB4 ASP B 200 GLY B 209 1 10 HELIX 14 AB5 ASN B 228 THR B 235 1 8 HELIX 15 AB6 THR B 235 LEU B 248 1 14 HELIX 16 AB7 HIS H 2 GLN H 19 1 18 HELIX 17 AB8 ALA H 40 ALA H 53 1 14 HELIX 18 AB9 VAL H 85 PHE H 89 5 5 HELIX 19 AC1 ASP H 90 ILE H 100 1 11 HELIX 20 AC2 VAL H 103 LEU H 108 1 6 HELIX 21 AC3 ARG I 7 ILE I 9 5 3 HELIX 22 AC4 ALA I 10 LEU I 15 1 6 HELIX 23 AC5 GLY I 32 LYS I 47 1 16 HELIX 24 AC6 SER I 62 GLY I 68 1 7 HELIX 25 AC7 ARG I 106 THR I 121 1 16 HELIX 26 AC8 GLY I 138 LEU I 148 1 11 HELIX 27 AC9 SER I 160 GLY I 178 1 19 HELIX 28 AD1 ASP I 200 GLY I 209 1 10 HELIX 29 AD2 ASP I 221 LYS I 225 5 5 HELIX 30 AD3 ASN I 228 THR I 235 1 8 HELIX 31 AD4 THR I 235 ARG I 247 1 13 SHEET 1 AA1 3 GLU A 61 GLU A 67 0 SHEET 2 AA1 3 ARG A 25 GLY A 34 1 N VAL A 29 O GLU A 63 SHEET 3 AA1 3 VAL A 126 GLU A 134 -1 O GLY A 130 N ARG A 30 SHEET 1 AA2 3 GLU A 79 LYS A 81 0 SHEET 2 AA2 3 VAL A 70 CYS A 73 -1 N PHE A 71 O TRP A 80 SHEET 3 AA2 3 PHE A 118 LYS A 122 -1 O GLU A 119 N LYS A 72 SHEET 1 AA3 7 ILE B 89 MET B 92 0 SHEET 2 AA3 7 VAL B 51 ASP B 55 1 N VAL B 51 O LYS B 90 SHEET 3 AA3 7 LEU B 126 ASP B 132 1 O VAL B 130 N GLY B 52 SHEET 4 AA3 7 VAL B 18 VAL B 25 1 N ILE B 22 O LEU B 129 SHEET 5 AA3 7 PHE B 153 ALA B 157 1 O LEU B 154 N PRO B 23 SHEET 6 AA3 7 VAL B 181 LYS B 189 1 O VAL B 185 N VAL B 155 SHEET 7 AA3 7 TYR B 212 PRO B 217 1 O ILE B 216 N GLU B 186 SHEET 1 AA4 2 GLU B 76 GLU B 77 0 SHEET 2 AA4 2 VAL B 81 VAL B 82 -1 O VAL B 82 N GLU B 76 SHEET 1 AA5 3 GLU H 61 GLU H 67 0 SHEET 2 AA5 3 ARG H 25 GLY H 34 1 N LEU H 33 O VAL H 65 SHEET 3 AA5 3 VAL H 126 GLU H 134 -1 O GLY H 130 N ARG H 30 SHEET 1 AA6 3 GLU H 79 LYS H 81 0 SHEET 2 AA6 3 VAL H 70 CYS H 73 -1 N PHE H 71 O TRP H 80 SHEET 3 AA6 3 PHE H 118 LYS H 122 -1 O GLU H 119 N LYS H 72 SHEET 1 AA7 7 ILE I 89 MET I 92 0 SHEET 2 AA7 7 VAL I 51 ASP I 55 1 N LEU I 53 O MET I 92 SHEET 3 AA7 7 LEU I 126 ASP I 132 1 O VAL I 130 N LEU I 54 SHEET 4 AA7 7 VAL I 18 VAL I 25 1 N ILE I 22 O LEU I 129 SHEET 5 AA7 7 PHE I 153 ALA I 157 1 O LEU I 154 N PRO I 23 SHEET 6 AA7 7 VAL I 181 LYS I 189 1 O ASN I 187 N ALA I 157 SHEET 7 AA7 7 TYR I 212 PRO I 217 1 O ILE I 216 N GLU I 186 LINK SG CYS A 73 ZN ZN A 201 1555 1555 2.29 LINK SG CYS A 76 ZN ZN A 201 1555 1555 2.29 LINK SG CYS A 110 ZN ZN A 201 1555 1555 2.32 LINK SG CYS A 113 ZN ZN A 201 1555 1555 2.28 LINK OG SER B 34 MG MG B 302 1555 1555 2.07 LINK O3G ACP B 301 MG MG B 302 1555 1555 1.93 LINK O2B ACP B 301 MG MG B 302 1555 1555 2.12 LINK MG MG B 302 O HOH B 401 1555 1555 2.07 LINK MG MG B 302 O HOH B 402 1555 1555 2.07 LINK MG MG B 302 O HOH B 403 1555 1555 2.07 LINK SG CYS H 73 ZN ZN H 201 1555 1555 2.30 LINK SG CYS H 76 ZN ZN H 201 1555 1555 2.26 LINK SG CYS H 110 ZN ZN H 201 1555 1555 2.34 LINK SG CYS H 113 ZN ZN H 201 1555 1555 2.32 LINK OG SER I 34 MG MG I 302 1555 1555 2.07 LINK O3G ACP I 301 MG MG I 302 1555 1555 2.03 LINK O1B ACP I 301 MG MG I 302 1555 1555 2.15 LINK MG MG I 302 O HOH I 401 1555 1555 2.07 LINK MG MG I 302 O HOH I 402 1555 1555 2.07 LINK MG MG I 302 O HOH I 403 1555 1555 2.07 SITE 1 AC1 4 CYS A 73 CYS A 76 CYS A 110 CYS A 113 SITE 1 AC2 23 GLY B 30 VAL B 31 GLY B 32 LYS B 33 SITE 2 AC2 23 SER B 34 LEU B 35 ASP B 57 PRO B 135 SITE 3 AC2 23 ASN B 187 MET B 188 PRO B 217 TYR B 219 SITE 4 AC2 23 LEU B 222 ASP B 223 PHE B 237 MG B 302 SITE 5 AC2 23 HOH B 401 HOH B 402 HOH B 403 LYS I 28 SITE 6 AC2 23 GLY I 29 SER I 160 LEU I 162 SITE 1 AC3 5 SER B 34 ACP B 301 HOH B 401 HOH B 402 SITE 2 AC3 5 HOH B 403 SITE 1 AC4 4 CYS H 73 CYS H 76 CYS H 110 CYS H 113 SITE 1 AC5 20 LYS B 28 GLY B 29 SER B 160 GLY I 29 SITE 2 AC5 20 GLY I 30 GLY I 32 LYS I 33 SER I 34 SITE 3 AC5 20 LEU I 35 ASP I 57 PRO I 135 ASN I 187 SITE 4 AC5 20 MET I 188 PRO I 217 TYR I 219 ASP I 223 SITE 5 AC5 20 MG I 302 HOH I 401 HOH I 402 HOH I 403 SITE 1 AC6 6 SER I 34 ASP I 57 ACP I 301 HOH I 401 SITE 2 AC6 6 HOH I 402 HOH I 403 CRYST1 121.945 123.931 55.099 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018149 0.00000