HEADER ENDOCYTOSIS 08-JUL-15 5AWT TITLE CRYSTAL STRUCTURE OF THE SGIP1 MU HOMOLOGY DOMAIN IN COMPLEX WITH AN TITLE 2 EPS15 FRAGMENT CONTAINING TWO DPF MOTIFS (YDPFGGDPFKG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3-CONTAINING GRB2-LIKE PROTEIN 3-INTERACTING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 552-828; COMPND 5 SYNONYM: ENDOPHILIN-3-INTERACTING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE 15; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: EPS15; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SGIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS ENDOCYTOSIS, PROTEIN-PROTEIN INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR A.SHIMADA,A.YAMAGUCHI,D.KOHDA REVDAT 3 08-NOV-23 5AWT 1 LINK REVDAT 2 26-FEB-20 5AWT 1 REMARK REVDAT 1 06-JUL-16 5AWT 0 JRNL AUTH A.SHIMADA,A.YAMAGUCHI,D.KOHDA JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF TWO CONSECUTIVE JRNL TITL 2 MUTUALLY INTERACTING DPF MOTIFS BY THE SGIP1 MU HOMOLOGY JRNL TITL 3 DOMAIN. JRNL REF SCI REP V. 6 19565 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26822536 JRNL DOI 10.1038/SREP19565 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2698 - 4.6192 1.00 2716 116 0.1752 0.1972 REMARK 3 2 4.6192 - 3.6671 1.00 2545 148 0.1706 0.2412 REMARK 3 3 3.6671 - 3.2038 1.00 2511 129 0.2039 0.2649 REMARK 3 4 3.2038 - 2.9110 1.00 2494 125 0.2315 0.2993 REMARK 3 5 2.9110 - 2.7024 1.00 2469 143 0.2489 0.2525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2191 REMARK 3 ANGLE : 1.448 2978 REMARK 3 CHIRALITY : 0.093 335 REMARK 3 PLANARITY : 0.008 386 REMARK 3 DIHEDRAL : 15.129 800 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 558 THROUGH 599 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.930 11.755 103.083 REMARK 3 T TENSOR REMARK 3 T11: 0.2528 T22: 0.3885 REMARK 3 T33: 0.2674 T12: 0.0365 REMARK 3 T13: 0.0303 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 3.3556 L22: 6.5796 REMARK 3 L33: 8.2095 L12: -2.0494 REMARK 3 L13: 1.4465 L23: -4.5322 REMARK 3 S TENSOR REMARK 3 S11: -0.0880 S12: -0.2919 S13: -0.3488 REMARK 3 S21: 0.4592 S22: -0.2704 S23: -0.1239 REMARK 3 S31: -0.2031 S32: 0.0083 S33: 0.3950 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 600 THROUGH 643 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.659 -1.784 107.256 REMARK 3 T TENSOR REMARK 3 T11: 0.4572 T22: 0.3475 REMARK 3 T33: 0.4874 T12: 0.1779 REMARK 3 T13: -0.0500 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 6.3467 L22: 7.4855 REMARK 3 L33: 8.5085 L12: 0.6402 REMARK 3 L13: 0.3956 L23: -1.7873 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: 0.5895 S13: -0.2898 REMARK 3 S21: -0.5189 S22: -0.1920 S23: -0.0920 REMARK 3 S31: 1.0908 S32: 0.5580 S33: 0.0489 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 644 THROUGH 673 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.473 1.938 119.789 REMARK 3 T TENSOR REMARK 3 T11: 0.5538 T22: 0.8689 REMARK 3 T33: 0.4054 T12: 0.1235 REMARK 3 T13: 0.1051 T23: 0.1032 REMARK 3 L TENSOR REMARK 3 L11: 5.4047 L22: 4.8810 REMARK 3 L33: 3.7290 L12: -1.1007 REMARK 3 L13: -0.6120 L23: 0.6419 REMARK 3 S TENSOR REMARK 3 S11: -0.2849 S12: -1.7528 S13: 0.2237 REMARK 3 S21: 1.2345 S22: 0.3048 S23: 0.4426 REMARK 3 S31: -0.2776 S32: -0.0915 S33: -0.1221 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 674 THROUGH 717 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.627 24.792 91.379 REMARK 3 T TENSOR REMARK 3 T11: 0.5799 T22: 0.4685 REMARK 3 T33: 0.3423 T12: 0.1362 REMARK 3 T13: -0.0853 T23: -0.0546 REMARK 3 L TENSOR REMARK 3 L11: 3.7811 L22: 4.4563 REMARK 3 L33: 3.5822 L12: -0.0843 REMARK 3 L13: 0.2478 L23: -1.3402 REMARK 3 S TENSOR REMARK 3 S11: 0.1211 S12: 0.3851 S13: -0.1751 REMARK 3 S21: -0.7370 S22: 0.0235 S23: 0.6648 REMARK 3 S31: -0.1233 S32: -0.0951 S33: -0.1206 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 718 THROUGH 789 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5334 34.9921 98.5151 REMARK 3 T TENSOR REMARK 3 T11: 0.6414 T22: 0.5361 REMARK 3 T33: 0.4721 T12: 0.1967 REMARK 3 T13: -0.0347 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 4.6126 L22: 6.0437 REMARK 3 L33: 3.3678 L12: -0.9568 REMARK 3 L13: -0.3459 L23: -0.6198 REMARK 3 S TENSOR REMARK 3 S11: 0.1270 S12: -0.2408 S13: 0.4917 REMARK 3 S21: 0.5450 S22: -0.1533 S23: 1.1554 REMARK 3 S31: -0.8621 S32: -0.3859 S33: 0.0017 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 790 THROUGH 823 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3449 7.4838 103.0902 REMARK 3 T TENSOR REMARK 3 T11: 0.3383 T22: 0.4232 REMARK 3 T33: 0.4707 T12: -0.0866 REMARK 3 T13: -0.0706 T23: 0.0812 REMARK 3 L TENSOR REMARK 3 L11: 1.9672 L22: 3.2588 REMARK 3 L33: 4.4899 L12: -3.3935 REMARK 3 L13: 1.2846 L23: -2.6247 REMARK 3 S TENSOR REMARK 3 S11: 0.2126 S12: -0.1851 S13: -0.5959 REMARK 3 S21: 0.0851 S22: 0.0610 S23: 1.0187 REMARK 3 S31: 0.1374 S32: -0.4060 S33: -0.2442 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 639 THROUGH 648 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4098 7.3119 116.1961 REMARK 3 T TENSOR REMARK 3 T11: 1.0523 T22: 0.7711 REMARK 3 T33: 0.8379 T12: 0.0863 REMARK 3 T13: 0.2904 T23: 0.2191 REMARK 3 L TENSOR REMARK 3 L11: 9.0885 L22: 6.0936 REMARK 3 L33: 9.6060 L12: -0.7562 REMARK 3 L13: 4.3696 L23: 6.3785 REMARK 3 S TENSOR REMARK 3 S11: 0.3231 S12: -0.9693 S13: 0.3112 REMARK 3 S21: 0.5560 S22: -0.7970 S23: 0.6721 REMARK 3 S31: 0.7717 S32: -0.5015 S33: 0.2414 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1300000099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13428 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5AWR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, ZINC ACETATE, SODIUM REMARK 280 ACETATE, SODIUM IODIDE, PH 5.1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.85800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.85800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.85800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.85800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.85800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.85800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.85800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.85800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 547 REMARK 465 PRO A 548 REMARK 465 LEU A 549 REMARK 465 GLY A 550 REMARK 465 SER A 551 REMARK 465 LEU A 552 REMARK 465 THR A 553 REMARK 465 MET A 554 REMARK 465 GLY A 555 REMARK 465 ALA A 556 REMARK 465 GLN A 557 REMARK 465 ASP A 634 REMARK 465 ASN A 635 REMARK 465 THR A 636 REMARK 465 GLN A 637 REMARK 465 ASN A 638 REMARK 465 GLY B 649 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1012 O HOH A 1028 1.96 REMARK 500 OG1 THR A 667 OD1 ASP B 645 2.10 REMARK 500 OE2 GLU A 748 O HOH A 1001 2.13 REMARK 500 O SER A 785 O HOH A 1002 2.14 REMARK 500 OH TYR A 668 OD1 ASP B 640 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1014 O HOH A 1029 3545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 726 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 632 66.87 63.12 REMARK 500 ALA A 640 -80.26 -81.87 REMARK 500 LYS A 663 79.80 -119.03 REMARK 500 ASN A 765 10.76 -142.90 REMARK 500 LEU A 814 135.01 -171.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 558 OD1 REMARK 620 2 ASP A 558 OD2 65.9 REMARK 620 3 GLU A 748 OE1 144.1 81.4 REMARK 620 4 GLU A 748 OE2 145.9 83.3 1.9 REMARK 620 5 HOH A1001 O 131.5 65.6 21.0 22.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 589 OE1 REMARK 620 2 GLU A 589 OE2 55.1 REMARK 620 3 HOH A1032 O 159.8 137.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 903 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 655 ND1 REMARK 620 2 HOH A1031 O 113.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 906 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AWR RELATED DB: PDB REMARK 900 THE SAME PROTEIN REMARK 900 RELATED ID: 5AWS RELATED DB: PDB REMARK 900 ONE OF TWO IS THE SAME PROTEIN REMARK 900 RELATED ID: 5AWU RELATED DB: PDB DBREF 5AWT A 552 828 UNP Q9BQI5 SGIP1_HUMAN 552 828 DBREF 5AWT B 639 649 PDB 5AWT 5AWT 639 649 SEQADV 5AWT GLY A 547 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWT PRO A 548 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWT LEU A 549 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWT GLY A 550 UNP Q9BQI5 EXPRESSION TAG SEQADV 5AWT SER A 551 UNP Q9BQI5 EXPRESSION TAG SEQRES 1 A 282 GLY PRO LEU GLY SER LEU THR MET GLY ALA GLN ASP THR SEQRES 2 A 282 LEU PRO VAL ALA ALA ALA PHE THR GLU THR VAL ASN ALA SEQRES 3 A 282 TYR PHE LYS GLY ALA ASP PRO SER LYS CYS ILE VAL LYS SEQRES 4 A 282 ILE THR GLY GLU MET VAL LEU SER PHE PRO ALA GLY ILE SEQRES 5 A 282 THR ARG HIS PHE ALA ASN ASN PRO SER PRO ALA ALA LEU SEQRES 6 A 282 THR PHE ARG VAL ILE ASN PHE SER ARG LEU GLU HIS VAL SEQRES 7 A 282 LEU PRO ASN PRO GLN LEU LEU CYS CYS ASP ASN THR GLN SEQRES 8 A 282 ASN ASP ALA ASN THR LYS GLU PHE TRP VAL ASN MET PRO SEQRES 9 A 282 ASN LEU MET THR HIS LEU LYS LYS VAL SER GLU GLN LYS SEQRES 10 A 282 PRO GLN ALA THR TYR TYR ASN VAL ASP MET LEU LYS TYR SEQRES 11 A 282 GLN VAL SER ALA GLN GLY ILE GLN SER THR PRO LEU ASN SEQRES 12 A 282 LEU ALA VAL ASN TRP ARG CYS GLU PRO SER SER THR ASP SEQRES 13 A 282 LEU ARG ILE ASP TYR LYS TYR ASN THR ASP ALA MET THR SEQRES 14 A 282 THR ALA VAL ALA LEU ASN ASN VAL GLN PHE LEU VAL PRO SEQRES 15 A 282 ILE ASP GLY GLY VAL THR LYS LEU GLN ALA VAL LEU PRO SEQRES 16 A 282 PRO ALA VAL TRP ASN ALA GLU GLN GLN ARG ILE LEU TRP SEQRES 17 A 282 LYS ILE PRO ASP ILE SER GLN LYS SER GLU ASN GLY GLY SEQRES 18 A 282 VAL GLY SER LEU LEU ALA ARG PHE GLN LEU SER GLU GLY SEQRES 19 A 282 PRO SER LYS PRO SER PRO LEU VAL VAL GLN PHE THR SER SEQRES 20 A 282 GLU GLY SER THR LEU SER GLY CYS ASP ILE GLU LEU VAL SEQRES 21 A 282 GLY ALA GLY TYR ARG PHE SER LEU ILE LYS LYS ARG PHE SEQRES 22 A 282 ALA ALA GLY LYS TYR LEU ALA ASP ASN SEQRES 1 B 11 TYR ASP PRO PHE GLY GLY ASP PRO PHE LYS GLY HET ZN A 901 1 HET ZN A 902 1 HET ZN A 903 1 HET ZN A 904 1 HET ZN A 905 1 HET ZN A 906 1 HETNAM ZN ZINC ION FORMUL 3 ZN 6(ZN 2+) FORMUL 9 HOH *35(H2 O) HELIX 1 AA1 ASP A 578 CYS A 582 5 5 HELIX 2 AA2 GLY A 597 ASN A 605 1 9 HELIX 3 AA3 ASN A 648 LYS A 663 1 16 HELIX 4 AA4 GLN A 681 THR A 686 5 6 HELIX 5 AA5 THR A 711 MET A 714 5 4 SHEET 1 AA1 9 LEU A 621 PRO A 626 0 SHEET 2 AA1 9 TYR A 668 VAL A 678 -1 O LYS A 675 N LEU A 625 SHEET 3 AA1 9 ILE A 583 PRO A 595 -1 N GLY A 588 O TYR A 676 SHEET 4 AA1 9 LEU A 560 LYS A 575 -1 N ASN A 571 O LYS A 585 SHEET 5 AA1 9 TYR A 810 ASP A 827 1 O LYS A 816 N ALA A 564 SHEET 6 AA1 9 LEU A 787 GLU A 794 -1 N PHE A 791 O ALA A 821 SHEET 7 AA1 9 LEU A 720 PRO A 728 -1 N ASN A 721 O THR A 792 SHEET 8 AA1 9 ARG A 751 ILE A 759 -1 O ILE A 759 N LEU A 720 SHEET 9 AA1 9 VAL A 744 ASN A 746 -1 N ASN A 746 O ARG A 751 SHEET 1 AA2 3 THR A 642 TRP A 646 0 SHEET 2 AA2 3 THR A 612 ILE A 616 -1 N PHE A 613 O PHE A 645 SHEET 3 AA2 3 ASP A 802 VAL A 806 -1 O GLU A 804 N ARG A 614 SHEET 1 AA3 4 LEU A 688 GLU A 697 0 SHEET 2 AA3 4 SER A 700 TYR A 709 -1 O ASP A 702 N ARG A 695 SHEET 3 AA3 4 VAL A 768 LEU A 777 -1 O GLY A 769 N TYR A 707 SHEET 4 AA3 4 VAL A 733 LEU A 740 -1 N LYS A 735 O GLN A 776 SSBOND 1 CYS A 633 CYS A 633 1555 3545 2.05 LINK OD1 ASP A 558 ZN ZN A 901 1555 1555 2.13 LINK OD2 ASP A 558 ZN ZN A 901 1555 1555 1.92 LINK OE1 GLU A 589 ZN ZN A 902 1555 1555 2.33 LINK OE2 GLU A 589 ZN ZN A 902 1555 1555 2.46 LINK OD2 ASP A 639 ZN ZN A 904 1555 1555 2.03 LINK OE2 GLU A 644 ZN ZN A 905 1555 3545 2.69 LINK ND1 HIS A 655 ZN ZN A 903 1555 1555 2.08 LINK OE1 GLU A 748 ZN ZN A 901 1555 5558 2.64 LINK OE2 GLU A 748 ZN ZN A 901 1555 5558 2.24 LINK ZN ZN A 901 O HOH A1001 1555 5548 2.36 LINK ZN ZN A 902 O HOH A1032 1555 1555 2.60 LINK ZN ZN A 903 O HOH A1031 1555 1555 2.37 CISPEP 1 LEU A 740 PRO A 741 0 -4.21 CISPEP 2 GLY A 780 PRO A 781 0 5.03 SITE 1 AC1 2 ASP A 558 HIS A 601 SITE 1 AC2 3 GLU A 589 ASP A 672 HOH A1032 SITE 1 AC3 2 HIS A 655 HOH A1031 SITE 1 AC4 3 HIS A 623 ASP A 639 HOH A1004 SITE 1 AC5 3 HIS A 623 GLU A 644 GLN A 677 SITE 1 AC6 1 ASP A 758 CRYST1 107.716 107.716 79.978 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009284 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012503 0.00000