HEADER HYDROLASE 24-JUL-15 5AXA TITLE CRYSTAL STRUCTURE OF MOUSE SAHH COMPLEXED WITH ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSYLHOMOCYSTEINASE; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ADOHCYASE,CUBP,LIVER COPPER-BINDING PROTEIN,S-ADENOSYL-L- COMPND 5 HOMOCYSTEINE HYDROLASE; COMPND 6 EC: 3.3.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: AHCY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE NUCLEOSIDE COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KUSAKABE,M.ISHIHARA,N.TANAKA REVDAT 3 20-MAR-24 5AXA 1 LINK REVDAT 2 26-FEB-20 5AXA 1 REMARK REVDAT 1 27-JUL-16 5AXA 0 JRNL AUTH Y.KUSAKABE,M.ISHIHARA,N.TANAKA JRNL TITL CRYSTAL STRUCTURE OF MOUSE SAHH COMPLEXED WITH ADENOSINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 123140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9114 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 439 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 1161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.674 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7006 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9509 ; 1.655 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 869 ; 6.031 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 293 ;36.677 ;24.676 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1207 ;13.181 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;12.862 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1069 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5198 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4303 ; 0.841 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6922 ; 1.412 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2703 ; 2.449 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2587 ; 3.832 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5AXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1300000130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 132732 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, PH 6.9, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.32200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.22150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.65450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.32200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.22150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.65450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.32200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.22150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.65450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.32200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.22150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.65450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -183.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -100.64400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -104.44300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 303 O HOH A 602 1.86 REMARK 500 O HOH A 700 O HOH A 750 2.10 REMARK 500 O HOH C 621 O HOH C 641 2.10 REMARK 500 O HOH C 1112 O HOH C 1190 2.13 REMARK 500 O HOH C 604 O HOH C 619 2.14 REMARK 500 O ASP A 303 O HOH A 603 2.15 REMARK 500 O ASP C 303 O HOH C 602 2.18 REMARK 500 O HOH C 898 O HOH C 1019 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1092 O HOH A 1092 2445 1.96 REMARK 500 O HOH A 791 O HOH C 1069 7455 2.12 REMARK 500 O HOH A 791 O HOH C 899 7455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 7 171.56 179.34 REMARK 500 HIS A 55 118.57 -32.20 REMARK 500 ALA A 101 138.74 -171.57 REMARK 500 LYS A 186 -71.64 -100.37 REMARK 500 PHE A 189 -68.23 -127.33 REMARK 500 PHE A 302 -135.21 35.79 REMARK 500 ALA A 350 -141.78 -140.17 REMARK 500 ASP C 11 103.35 -165.29 REMARK 500 HIS C 55 117.28 -23.73 REMARK 500 ALA C 101 134.94 -170.40 REMARK 500 LYS C 186 -68.90 -101.02 REMARK 500 PHE C 189 -63.97 -126.40 REMARK 500 TYR C 221 46.42 -140.48 REMARK 500 ASP C 280 43.00 72.02 REMARK 500 PHE C 302 -138.79 52.09 REMARK 500 LEU C 344 114.50 -38.58 REMARK 500 ALA C 350 -135.81 -137.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1162 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1163 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1164 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1165 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1166 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH C1193 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH C1194 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH C1195 DISTANCE = 6.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 59 OE2 REMARK 620 2 HOH A 774 O 97.9 REMARK 620 3 HOH A 801 O 92.0 78.8 REMARK 620 4 HOH A1059 O 112.5 146.3 85.6 REMARK 620 5 HOH C 655 O 88.3 97.0 175.8 98.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 676 O REMARK 620 2 GLU C 59 OE2 88.7 REMARK 620 3 HOH C 816 O 175.2 88.4 REMARK 620 4 HOH C 819 O 98.5 98.4 78.1 REMARK 620 5 HOH C1071 O 98.1 109.5 86.5 147.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AXB RELATED DB: PDB REMARK 900 RELATED ID: 5AXC RELATED DB: PDB REMARK 900 RELATED ID: 5AXD RELATED DB: PDB DBREF 5AXA A 1 432 UNP P50247 SAHH_MOUSE 1 432 DBREF 5AXA C 1 432 UNP P50247 SAHH_MOUSE 1 432 SEQRES 1 A 432 MET SER ASP LYS LEU PRO TYR LYS VAL ALA ASP ILE GLY SEQRES 2 A 432 LEU ALA ALA TRP GLY ARG LYS ALA LEU ASP ILE ALA GLU SEQRES 3 A 432 ASN GLU MET PRO GLY LEU MET ARG MET ARG GLU MET TYR SEQRES 4 A 432 SER ALA SER LYS PRO LEU LYS GLY ALA ARG ILE ALA GLY SEQRES 5 A 432 CYS LEU HIS MET THR VAL GLU THR ALA VAL LEU ILE GLU SEQRES 6 A 432 THR LEU VAL ALA LEU GLY ALA GLU VAL ARG TRP SER SER SEQRES 7 A 432 CYS ASN ILE PHE SER THR GLN ASP HIS ALA ALA ALA ALA SEQRES 8 A 432 ILE ALA LYS ALA GLY ILE PRO VAL PHE ALA TRP LYS GLY SEQRES 9 A 432 GLU THR ASP GLU GLU TYR LEU TRP CYS ILE GLU GLN THR SEQRES 10 A 432 LEU HIS PHE LYS ASP GLY PRO LEU ASN MET ILE LEU ASP SEQRES 11 A 432 ASP GLY GLY ASP LEU THR ASN LEU ILE HIS THR LYS TYR SEQRES 12 A 432 PRO GLN LEU LEU SER GLY ILE ARG GLY ILE SER GLU GLU SEQRES 13 A 432 THR THR THR GLY VAL HIS ASN LEU TYR LYS MET MET SER SEQRES 14 A 432 ASN GLY ILE LEU LYS VAL PRO ALA ILE ASN VAL ASN ASP SEQRES 15 A 432 SER VAL THR LYS SER LYS PHE ASP ASN LEU TYR GLY CYS SEQRES 16 A 432 ARG GLU SER LEU ILE ASP GLY ILE LYS ARG ALA THR ASP SEQRES 17 A 432 VAL MET ILE ALA GLY LYS VAL ALA VAL VAL ALA GLY TYR SEQRES 18 A 432 GLY ASP VAL GLY LYS GLY CYS ALA GLN ALA LEU ARG GLY SEQRES 19 A 432 PHE GLY ALA ARG VAL ILE ILE THR GLU ILE ASP PRO ILE SEQRES 20 A 432 ASN ALA LEU GLN ALA ALA MET GLU GLY TYR GLU VAL THR SEQRES 21 A 432 THR MET ASP GLU ALA CYS LYS GLU GLY ASN ILE PHE VAL SEQRES 22 A 432 THR THR THR GLY CYS VAL ASP ILE ILE LEU GLY ARG HIS SEQRES 23 A 432 PHE GLU GLN MET LYS ASP ASP ALA ILE VAL CYS ASN ILE SEQRES 24 A 432 GLY HIS PHE ASP VAL GLU ILE ASP VAL LYS TRP LEU ASN SEQRES 25 A 432 GLU ASN ALA VAL GLU LYS VAL ASN ILE LYS PRO GLN VAL SEQRES 26 A 432 ASP ARG TYR TRP LEU LYS ASN GLY ARG ARG ILE ILE LEU SEQRES 27 A 432 LEU ALA GLU GLY ARG LEU VAL ASN LEU GLY CYS ALA MET SEQRES 28 A 432 GLY HIS PRO SER PHE VAL MET SER ASN SER PHE THR ASN SEQRES 29 A 432 GLN VAL MET ALA GLN ILE GLU LEU TRP THR HIS PRO ASP SEQRES 30 A 432 LYS TYR PRO VAL GLY VAL HIS PHE LEU PRO LYS LYS LEU SEQRES 31 A 432 ASP GLU ALA VAL ALA GLU ALA HIS LEU GLY LYS LEU ASN SEQRES 32 A 432 VAL LYS LEU THR LYS LEU THR GLU LYS GLN ALA GLN TYR SEQRES 33 A 432 LEU GLY MET PRO ILE ASN GLY PRO PHE LYS PRO ASP HIS SEQRES 34 A 432 TYR ARG TYR SEQRES 1 C 432 MET SER ASP LYS LEU PRO TYR LYS VAL ALA ASP ILE GLY SEQRES 2 C 432 LEU ALA ALA TRP GLY ARG LYS ALA LEU ASP ILE ALA GLU SEQRES 3 C 432 ASN GLU MET PRO GLY LEU MET ARG MET ARG GLU MET TYR SEQRES 4 C 432 SER ALA SER LYS PRO LEU LYS GLY ALA ARG ILE ALA GLY SEQRES 5 C 432 CYS LEU HIS MET THR VAL GLU THR ALA VAL LEU ILE GLU SEQRES 6 C 432 THR LEU VAL ALA LEU GLY ALA GLU VAL ARG TRP SER SER SEQRES 7 C 432 CYS ASN ILE PHE SER THR GLN ASP HIS ALA ALA ALA ALA SEQRES 8 C 432 ILE ALA LYS ALA GLY ILE PRO VAL PHE ALA TRP LYS GLY SEQRES 9 C 432 GLU THR ASP GLU GLU TYR LEU TRP CYS ILE GLU GLN THR SEQRES 10 C 432 LEU HIS PHE LYS ASP GLY PRO LEU ASN MET ILE LEU ASP SEQRES 11 C 432 ASP GLY GLY ASP LEU THR ASN LEU ILE HIS THR LYS TYR SEQRES 12 C 432 PRO GLN LEU LEU SER GLY ILE ARG GLY ILE SER GLU GLU SEQRES 13 C 432 THR THR THR GLY VAL HIS ASN LEU TYR LYS MET MET SER SEQRES 14 C 432 ASN GLY ILE LEU LYS VAL PRO ALA ILE ASN VAL ASN ASP SEQRES 15 C 432 SER VAL THR LYS SER LYS PHE ASP ASN LEU TYR GLY CYS SEQRES 16 C 432 ARG GLU SER LEU ILE ASP GLY ILE LYS ARG ALA THR ASP SEQRES 17 C 432 VAL MET ILE ALA GLY LYS VAL ALA VAL VAL ALA GLY TYR SEQRES 18 C 432 GLY ASP VAL GLY LYS GLY CYS ALA GLN ALA LEU ARG GLY SEQRES 19 C 432 PHE GLY ALA ARG VAL ILE ILE THR GLU ILE ASP PRO ILE SEQRES 20 C 432 ASN ALA LEU GLN ALA ALA MET GLU GLY TYR GLU VAL THR SEQRES 21 C 432 THR MET ASP GLU ALA CYS LYS GLU GLY ASN ILE PHE VAL SEQRES 22 C 432 THR THR THR GLY CYS VAL ASP ILE ILE LEU GLY ARG HIS SEQRES 23 C 432 PHE GLU GLN MET LYS ASP ASP ALA ILE VAL CYS ASN ILE SEQRES 24 C 432 GLY HIS PHE ASP VAL GLU ILE ASP VAL LYS TRP LEU ASN SEQRES 25 C 432 GLU ASN ALA VAL GLU LYS VAL ASN ILE LYS PRO GLN VAL SEQRES 26 C 432 ASP ARG TYR TRP LEU LYS ASN GLY ARG ARG ILE ILE LEU SEQRES 27 C 432 LEU ALA GLU GLY ARG LEU VAL ASN LEU GLY CYS ALA MET SEQRES 28 C 432 GLY HIS PRO SER PHE VAL MET SER ASN SER PHE THR ASN SEQRES 29 C 432 GLN VAL MET ALA GLN ILE GLU LEU TRP THR HIS PRO ASP SEQRES 30 C 432 LYS TYR PRO VAL GLY VAL HIS PHE LEU PRO LYS LYS LEU SEQRES 31 C 432 ASP GLU ALA VAL ALA GLU ALA HIS LEU GLY LYS LEU ASN SEQRES 32 C 432 VAL LYS LEU THR LYS LEU THR GLU LYS GLN ALA GLN TYR SEQRES 33 C 432 LEU GLY MET PRO ILE ASN GLY PRO PHE LYS PRO ASP HIS SEQRES 34 C 432 TYR ARG TYR HET NAD A 501 44 HET ADN A 502 19 HET NA A 503 1 HET NAD C 501 44 HET ADN C 502 19 HET NA C 503 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ADN ADENOSINE HETNAM NA SODIUM ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 ADN 2(C10 H13 N5 O4) FORMUL 5 NA 2(NA 1+) FORMUL 9 HOH *1161(H2 O) HELIX 1 AA1 ASP A 11 GLY A 13 5 3 HELIX 2 AA2 LEU A 14 ASN A 27 1 14 HELIX 3 AA3 MET A 29 SER A 40 1 12 HELIX 4 AA4 THR A 57 LEU A 70 1 14 HELIX 5 AA5 GLN A 85 ALA A 95 1 11 HELIX 6 AA6 THR A 106 THR A 117 1 12 HELIX 7 AA7 GLY A 133 TYR A 143 1 11 HELIX 8 AA8 PRO A 144 ILE A 150 5 7 HELIX 9 AA9 THR A 157 ASN A 170 1 14 HELIX 10 AB1 SER A 183 LYS A 188 1 6 HELIX 11 AB2 PHE A 189 ASP A 208 1 20 HELIX 12 AB3 GLY A 222 PHE A 235 1 14 HELIX 13 AB4 ASP A 245 GLU A 255 1 11 HELIX 14 AB5 THR A 261 CYS A 266 1 6 HELIX 15 AB6 LEU A 283 GLU A 288 1 6 HELIX 16 AB7 ASP A 307 ALA A 315 1 9 HELIX 17 AB8 GLU A 341 ARG A 343 5 3 HELIX 18 AB9 LEU A 344 ALA A 350 1 7 HELIX 19 AC1 PRO A 354 HIS A 375 1 22 HELIX 20 AC2 PRO A 376 TYR A 379 5 4 HELIX 21 AC3 PRO A 387 ALA A 397 1 11 HELIX 22 AC4 HIS A 398 ASN A 403 5 6 HELIX 23 AC5 THR A 410 GLY A 418 1 9 HELIX 24 AC6 ASP C 11 GLY C 13 5 3 HELIX 25 AC7 LEU C 14 ASN C 27 1 14 HELIX 26 AC8 MET C 29 SER C 40 1 12 HELIX 27 AC9 THR C 57 LEU C 70 1 14 HELIX 28 AD1 GLN C 85 ALA C 95 1 11 HELIX 29 AD2 THR C 106 GLN C 116 1 11 HELIX 30 AD3 GLY C 133 TYR C 143 1 11 HELIX 31 AD4 PRO C 144 ILE C 150 5 7 HELIX 32 AD5 THR C 157 ASN C 170 1 14 HELIX 33 AD6 SER C 183 LYS C 188 1 6 HELIX 34 AD7 PHE C 189 ASP C 208 1 20 HELIX 35 AD8 GLY C 222 PHE C 235 1 14 HELIX 36 AD9 ASP C 245 GLU C 255 1 11 HELIX 37 AE1 THR C 261 CYS C 266 1 6 HELIX 38 AE2 LEU C 283 GLU C 288 1 6 HELIX 39 AE3 ASP C 307 ALA C 315 1 9 HELIX 40 AE4 GLU C 341 ARG C 343 5 3 HELIX 41 AE5 LEU C 344 ALA C 350 1 7 HELIX 42 AE6 PRO C 354 HIS C 375 1 22 HELIX 43 AE7 PRO C 376 TYR C 379 5 4 HELIX 44 AE8 PRO C 387 GLY C 400 1 14 HELIX 45 AE9 LYS C 401 ASN C 403 5 3 HELIX 46 AF1 THR C 410 GLY C 418 1 9 SHEET 1 AA1 7 VAL A 99 PHE A 100 0 SHEET 2 AA1 7 GLU A 73 SER A 77 1 N TRP A 76 O PHE A 100 SHEET 3 AA1 7 ARG A 49 CYS A 53 1 N ILE A 50 O GLU A 73 SHEET 4 AA1 7 MET A 127 ASP A 130 1 O LEU A 129 N CYS A 53 SHEET 5 AA1 7 GLY A 152 GLU A 155 1 O SER A 154 N ASP A 130 SHEET 6 AA1 7 ALA A 177 ASN A 179 1 O ILE A 178 N ILE A 153 SHEET 7 AA1 7 VAL A 383 HIS A 384 1 O HIS A 384 N ASN A 179 SHEET 1 AA2 2 HIS A 119 PHE A 120 0 SHEET 2 AA2 2 GLY A 123 PRO A 124 -1 O GLY A 123 N PHE A 120 SHEET 1 AA3 8 GLU A 258 VAL A 259 0 SHEET 2 AA3 8 ARG A 238 THR A 242 1 N ILE A 241 O GLU A 258 SHEET 3 AA3 8 VAL A 215 ALA A 219 1 N ALA A 216 O ILE A 240 SHEET 4 AA3 8 ILE A 271 THR A 274 1 O ILE A 271 N VAL A 217 SHEET 5 AA3 8 ALA A 294 ASN A 298 1 O ILE A 295 N PHE A 272 SHEET 6 AA3 8 ARG A 335 LEU A 339 1 O ILE A 337 N ALA A 294 SHEET 7 AA3 8 VAL A 325 TRP A 329 -1 N TYR A 328 O ILE A 336 SHEET 8 AA3 8 GLU A 317 LYS A 322 -1 N VAL A 319 O ARG A 327 SHEET 1 AA4 7 VAL C 99 PHE C 100 0 SHEET 2 AA4 7 GLU C 73 SER C 77 1 N TRP C 76 O PHE C 100 SHEET 3 AA4 7 ARG C 49 CYS C 53 1 N ILE C 50 O GLU C 73 SHEET 4 AA4 7 MET C 127 ASP C 130 1 O LEU C 129 N CYS C 53 SHEET 5 AA4 7 GLY C 152 GLU C 155 1 O SER C 154 N ASP C 130 SHEET 6 AA4 7 ALA C 177 ASN C 179 1 O ILE C 178 N ILE C 153 SHEET 7 AA4 7 VAL C 383 HIS C 384 1 O HIS C 384 N ASN C 179 SHEET 1 AA5 2 HIS C 119 PHE C 120 0 SHEET 2 AA5 2 GLY C 123 PRO C 124 -1 O GLY C 123 N PHE C 120 SHEET 1 AA6 8 GLU C 258 VAL C 259 0 SHEET 2 AA6 8 ARG C 238 THR C 242 1 N ILE C 241 O GLU C 258 SHEET 3 AA6 8 VAL C 215 ALA C 219 1 N ALA C 216 O ILE C 240 SHEET 4 AA6 8 ILE C 271 THR C 274 1 O ILE C 271 N VAL C 217 SHEET 5 AA6 8 ALA C 294 ASN C 298 1 O ILE C 295 N PHE C 272 SHEET 6 AA6 8 ARG C 335 LEU C 339 1 O ILE C 337 N ALA C 294 SHEET 7 AA6 8 VAL C 325 TRP C 329 -1 N TYR C 328 O ILE C 336 SHEET 8 AA6 8 GLU C 317 LYS C 322 -1 N VAL C 319 O ARG C 327 LINK OE2 GLU A 59 NA NA A 503 1555 1555 2.15 LINK NA NA A 503 O HOH A 774 1555 1555 2.33 LINK NA NA A 503 O HOH A 801 1555 1555 2.29 LINK NA NA A 503 O HOH A1059 1555 1555 2.40 LINK NA NA A 503 O HOH C 655 1555 1555 2.40 LINK O HOH A 676 NA NA C 503 1555 1555 2.34 LINK OE2 GLU C 59 NA NA C 503 1555 1555 2.18 LINK NA NA C 503 O HOH C 816 1555 1555 2.27 LINK NA NA C 503 O HOH C 819 1555 1555 2.29 LINK NA NA C 503 O HOH C1071 1555 1555 2.42 CISPEP 1 GLY A 423 PRO A 424 0 -1.62 CISPEP 2 GLY C 423 PRO C 424 0 -1.34 SITE 1 AC1 33 THR A 157 THR A 158 THR A 159 ASN A 191 SITE 2 AC1 33 GLY A 222 ASP A 223 VAL A 224 THR A 242 SITE 3 AC1 33 GLU A 243 ILE A 244 ASP A 245 ASN A 248 SITE 4 AC1 33 THR A 275 THR A 276 GLY A 277 CYS A 278 SITE 5 AC1 33 ILE A 281 ILE A 299 GLY A 300 HIS A 301 SITE 6 AC1 33 LEU A 344 ASN A 346 HIS A 353 GLN A 413 SITE 7 AC1 33 LYS A 426 TYR A 430 ADN A 502 HOH A 722 SITE 8 AC1 33 HOH A 737 HOH A 853 HOH A 854 HOH A 888 SITE 9 AC1 33 HOH A 898 SITE 1 AC2 15 HIS A 55 THR A 57 GLU A 59 THR A 60 SITE 2 AC2 15 ASP A 131 GLU A 156 THR A 157 LYS A 186 SITE 3 AC2 15 ASP A 190 HIS A 301 MET A 351 HIS A 353 SITE 4 AC2 15 MET A 358 PHE A 362 NAD A 501 SITE 1 AC3 6 GLU A 59 HOH A 774 HOH A 801 HOH A1059 SITE 2 AC3 6 ASP C 208 HOH C 655 SITE 1 AC4 33 THR C 157 THR C 158 THR C 159 ASN C 191 SITE 2 AC4 33 GLY C 222 ASP C 223 VAL C 224 THR C 242 SITE 3 AC4 33 GLU C 243 ILE C 244 ASP C 245 ASN C 248 SITE 4 AC4 33 THR C 275 THR C 276 GLY C 277 CYS C 278 SITE 5 AC4 33 ILE C 281 ILE C 299 GLY C 300 HIS C 301 SITE 6 AC4 33 LEU C 344 ASN C 346 HIS C 353 GLN C 413 SITE 7 AC4 33 LYS C 426 TYR C 430 ADN C 502 HOH C 673 SITE 8 AC4 33 HOH C 773 HOH C 877 HOH C 890 HOH C 895 SITE 9 AC4 33 HOH C 906 SITE 1 AC5 15 HIS C 55 THR C 57 GLU C 59 THR C 60 SITE 2 AC5 15 ASP C 131 GLU C 156 THR C 157 LYS C 186 SITE 3 AC5 15 ASP C 190 HIS C 301 MET C 351 HIS C 353 SITE 4 AC5 15 MET C 358 PHE C 362 NAD C 501 SITE 1 AC6 6 ASP A 208 HOH A 676 GLU C 59 HOH C 816 SITE 2 AC6 6 HOH C 819 HOH C1071 CRYST1 100.644 104.443 177.309 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009936 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005640 0.00000