HEADER OXIDOREDUCTASE 22-AUG-15 5AYK TITLE CRYSTAL STRUCTURE OF ERDJ5 FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY C MEMBER 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 32-793; COMPND 5 SYNONYM: ENDOPLASMIC RETICULUM DNA J DOMAIN-CONTAINING PROTEIN 5, COMPND 6 ERDJ5,ENDOPLASMIC RETICULUM DNAJ-PDI FUSION PROTEIN 1,J DOMAIN- COMPND 7 CONTAINING PROTEIN DISULFIDE ISOMERASE-LIKE PROTEIN,JPDI; COMPND 8 EC: 1.8.4.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DNAJC10, ERDJ5, JPDI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PDI FAMILY, THIOREDOXIN, ENDOPLASMIC RETICULUM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WATANABE,K.MAEGAWA,K.INABA REVDAT 3 08-NOV-23 5AYK 1 HETSYN REVDAT 2 26-FEB-20 5AYK 1 REMARK REVDAT 1 15-FEB-17 5AYK 0 JRNL AUTH K.MAEGAWA,S.WATANABE,M.OKUMURA,K.NOI,M.INOUE,R.USHIODA, JRNL AUTH 2 T.OGURA,K.NAGATA,K.INABA JRNL TITL HIGHLY DYNAMIC NATURE OF ERDJ5 IS ESSENTIAL FOR ENHANCEMENT JRNL TITL 2 OF THE ER ASSOCIATED DEGRADATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 39315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9517 - 5.3787 1.00 2766 152 0.1898 0.2033 REMARK 3 2 5.3787 - 4.2831 1.00 2719 141 0.1740 0.2080 REMARK 3 3 4.2831 - 3.7457 1.00 2672 150 0.1760 0.2240 REMARK 3 4 3.7457 - 3.4051 1.00 2688 144 0.1892 0.2003 REMARK 3 5 3.4051 - 3.1621 1.00 2689 137 0.2145 0.2530 REMARK 3 6 3.1621 - 2.9763 1.00 2681 115 0.2378 0.2592 REMARK 3 7 2.9763 - 2.8277 1.00 2676 147 0.2476 0.2772 REMARK 3 8 2.8277 - 2.7049 1.00 2658 150 0.2527 0.2903 REMARK 3 9 2.7049 - 2.6010 1.00 2644 144 0.2648 0.2919 REMARK 3 10 2.6010 - 2.5114 1.00 2642 151 0.2711 0.2910 REMARK 3 11 2.5114 - 2.4330 1.00 2657 140 0.2824 0.3313 REMARK 3 12 2.4330 - 2.3636 1.00 2667 145 0.2835 0.3386 REMARK 3 13 2.3636 - 2.3015 1.00 2609 137 0.2979 0.3109 REMARK 3 14 2.3015 - 2.2454 0.95 2570 124 0.3174 0.3396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6111 REMARK 3 ANGLE : 0.837 8303 REMARK 3 CHIRALITY : 0.032 884 REMARK 3 PLANARITY : 0.004 1080 REMARK 3 DIHEDRAL : 16.384 2187 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 116) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0456 18.6513 9.1609 REMARK 3 T TENSOR REMARK 3 T11: 0.5442 T22: 0.7201 REMARK 3 T33: 0.5182 T12: -0.0268 REMARK 3 T13: -0.0520 T23: 0.0774 REMARK 3 L TENSOR REMARK 3 L11: 0.5869 L22: 0.9364 REMARK 3 L33: 0.4367 L12: -0.3735 REMARK 3 L13: 0.2091 L23: 0.1074 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: 0.3065 S13: 0.3027 REMARK 3 S21: -0.0521 S22: 0.0527 S23: 0.1579 REMARK 3 S31: 0.0663 S32: -0.1527 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 233) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7415 -5.4112 17.9258 REMARK 3 T TENSOR REMARK 3 T11: 0.3254 T22: 0.5608 REMARK 3 T33: 0.4065 T12: -0.0646 REMARK 3 T13: -0.0289 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 1.7355 L22: 0.9737 REMARK 3 L33: 2.2642 L12: 0.8328 REMARK 3 L13: 0.1994 L23: 0.0392 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: 0.4269 S13: -0.0121 REMARK 3 S21: -0.0339 S22: 0.0559 S23: 0.1286 REMARK 3 S31: 0.2317 S32: -0.2154 S33: -0.0059 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8828 -13.3002 49.6680 REMARK 3 T TENSOR REMARK 3 T11: 0.3260 T22: 0.3057 REMARK 3 T33: 0.4937 T12: 0.0558 REMARK 3 T13: 0.1078 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 1.3535 L22: 1.7221 REMARK 3 L33: 1.4166 L12: 0.6100 REMARK 3 L13: 0.3832 L23: -0.4271 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.1593 S13: -0.1286 REMARK 3 S21: 0.2292 S22: 0.1284 S23: 0.3151 REMARK 3 S31: -0.0487 S32: -0.0975 S33: 0.0079 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 348 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7664 -3.3577 38.8614 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.1695 REMARK 3 T33: 0.1951 T12: -0.0131 REMARK 3 T13: -0.0024 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.7828 L22: 2.2809 REMARK 3 L33: 1.5693 L12: -0.0710 REMARK 3 L13: 0.0425 L23: 0.0052 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: 0.0566 S13: -0.0711 REMARK 3 S21: 0.0572 S22: 0.0380 S23: -0.0267 REMARK 3 S31: 0.0181 S32: -0.0635 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 454 THROUGH 555 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8043 3.8433 18.9056 REMARK 3 T TENSOR REMARK 3 T11: 0.4698 T22: 0.4286 REMARK 3 T33: 0.2990 T12: -0.1453 REMARK 3 T13: 0.0455 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.9623 L22: 2.0239 REMARK 3 L33: 2.8323 L12: -0.4795 REMARK 3 L13: 0.1321 L23: 0.2656 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.1058 S13: 0.0532 REMARK 3 S21: -0.2422 S22: 0.0878 S23: -0.0661 REMARK 3 S31: -0.8318 S32: 0.5528 S33: 0.0026 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 556 THROUGH 668 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.0997 2.7300 -7.4742 REMARK 3 T TENSOR REMARK 3 T11: 0.3812 T22: 0.3454 REMARK 3 T33: 0.2405 T12: 0.0976 REMARK 3 T13: 0.0212 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.4860 L22: 2.5871 REMARK 3 L33: 1.9188 L12: -0.6068 REMARK 3 L13: -0.7809 L23: 0.1572 REMARK 3 S TENSOR REMARK 3 S11: -0.0856 S12: -0.2352 S13: 0.0654 REMARK 3 S21: 0.1624 S22: 0.0669 S23: 0.0165 REMARK 3 S31: 0.2026 S32: 0.3520 S33: -0.0048 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 669 THROUGH 783 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4438 9.4514 -28.3358 REMARK 3 T TENSOR REMARK 3 T11: 0.3318 T22: 0.2559 REMARK 3 T33: 0.3389 T12: 0.1095 REMARK 3 T13: 0.0154 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 2.2897 L22: 2.4724 REMARK 3 L33: 2.5434 L12: -0.0668 REMARK 3 L13: 1.2733 L23: 1.1995 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: -0.0661 S13: 0.1479 REMARK 3 S21: 0.1097 S22: 0.0525 S23: 0.1769 REMARK 3 S31: -0.3340 S32: -0.1498 S33: -0.0037 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1300000198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39380 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 46.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3APO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, CYSTIN, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.48500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ARG A 27 REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 HIS A 30 REMARK 465 MET A 31 REMARK 465 THR A 32 REMARK 465 ASP A 33 REMARK 465 THR A 306 REMARK 465 THR A 307 REMARK 465 ALA A 308 REMARK 465 GLU A 377 REMARK 465 ASN A 378 REMARK 465 ALA A 379 REMARK 465 SER A 784 REMARK 465 GLN A 785 REMARK 465 VAL A 786 REMARK 465 LYS A 787 REMARK 465 ARG A 788 REMARK 465 ASN A 789 REMARK 465 LYS A 790 REMARK 465 ASP A 791 REMARK 465 GLU A 792 REMARK 465 LEU A 793 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 34 CG CD OE1 NE2 REMARK 470 LEU A 58 CG CD1 CD2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 ASN A 69 CG OD1 ND2 REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 ASN A 107 CG OD1 ND2 REMARK 470 GLN A 108 CG CD OE1 NE2 REMARK 470 GLN A 111 CG CD OE1 NE2 REMARK 470 SER A 116 OG REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 MET A 195 CG SD CE REMARK 470 ARG A 234 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 ASP A 305 CG OD1 OD2 REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 LYS A 375 CG CD CE NZ REMARK 470 ASN A 376 CG OD1 ND2 REMARK 470 LYS A 392 CG CD CE NZ REMARK 470 LYS A 429 CG CD CE NZ REMARK 470 LYS A 468 CG CD CE NZ REMARK 470 GLN A 521 CG CD OE1 NE2 REMARK 470 GLU A 551 CG CD OE1 OE2 REMARK 470 TYR A 645 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 688 CG CD CE NZ REMARK 470 ARG A 753 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 783 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 107 68.38 -69.68 REMARK 500 ASP A 189 53.31 -142.16 REMARK 500 HIS A 364 -81.50 -117.65 REMARK 500 ALA A 406 77.86 -159.17 REMARK 500 SER A 466 79.07 -106.04 REMARK 500 SER A 532 6.57 55.85 REMARK 500 LEU A 608 -55.16 -122.52 REMARK 500 TYR A 619 59.37 -117.79 REMARK 500 VAL A 684 -61.56 -97.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AYL RELATED DB: PDB DBREF 5AYK A 32 793 UNP Q9DC23 DJC10_MOUSE 32 793 SEQADV 5AYK MET A 11 UNP Q9DC23 INITIATING METHIONINE SEQADV 5AYK GLY A 12 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK SER A 13 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK SER A 14 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK HIS A 15 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK HIS A 16 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK HIS A 17 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK HIS A 18 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK HIS A 19 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK HIS A 20 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK SER A 21 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK SER A 22 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK GLY A 23 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK LEU A 24 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK VAL A 25 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK PRO A 26 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK ARG A 27 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK GLY A 28 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK SER A 29 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK HIS A 30 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK MET A 31 UNP Q9DC23 EXPRESSION TAG SEQADV 5AYK SER A 158 UNP Q9DC23 CYS 158 ENGINEERED MUTATION SEQADV 5AYK SER A 161 UNP Q9DC23 CYS 161 ENGINEERED MUTATION SEQADV 5AYK VAL A 399 UNP Q9DC23 GLY 399 ENGINEERED MUTATION SEQADV 5AYK SER A 419 UNP Q9DC23 CYS 419 ENGINEERED MUTATION SEQADV 5AYK SER A 480 UNP Q9DC23 CYS 480 ENGINEERED MUTATION SEQADV 5AYK SER A 483 UNP Q9DC23 CYS 483 ENGINEERED MUTATION SEQADV 5AYK SER A 588 UNP Q9DC23 CYS 588 ENGINEERED MUTATION SEQADV 5AYK SER A 591 UNP Q9DC23 CYS 591 ENGINEERED MUTATION SEQADV 5AYK SER A 700 UNP Q9DC23 CYS 700 ENGINEERED MUTATION SEQADV 5AYK SER A 703 UNP Q9DC23 CYS 703 ENGINEERED MUTATION SEQRES 1 A 783 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 783 LEU VAL PRO ARG GLY SER HIS MET THR ASP GLN ASN PHE SEQRES 3 A 783 TYR SER LEU LEU GLY VAL SER LYS THR ALA SER SER ARG SEQRES 4 A 783 GLU ILE ARG GLN ALA PHE LYS LYS LEU ALA LEU LYS LEU SEQRES 5 A 783 HIS PRO ASP LYS ASN PRO ASN ASN PRO ASN ALA HIS GLY SEQRES 6 A 783 ASP PHE LEU LYS ILE ASN ARG ALA TYR GLU VAL LEU LYS SEQRES 7 A 783 ASP GLU ASP LEU ARG LYS LYS TYR ASP LYS TYR GLY GLU SEQRES 8 A 783 LYS GLY LEU GLU ASP ASN GLN GLY GLY GLN TYR GLU SER SEQRES 9 A 783 TRP SER TYR TYR ARG TYR ASP PHE GLY ILE TYR ASP ASP SEQRES 10 A 783 ASP PRO GLU ILE ILE THR LEU GLU ARG ARG GLU PHE ASP SEQRES 11 A 783 ALA ALA VAL ASN SER GLY GLU LEU TRP PHE VAL ASN PHE SEQRES 12 A 783 TYR SER PRO GLY SER SER HIS SER HIS ASP LEU ALA PRO SEQRES 13 A 783 THR TRP ARG GLU PHE ALA LYS GLU VAL ASP GLY LEU LEU SEQRES 14 A 783 ARG ILE GLY ALA VAL ASN CYS GLY ASP ASP ARG MET LEU SEQRES 15 A 783 CYS ARG MET LYS GLY VAL ASN SER TYR PRO SER LEU PHE SEQRES 16 A 783 ILE PHE ARG SER GLY MET ALA ALA VAL LYS TYR ASN GLY SEQRES 17 A 783 ASP ARG SER LYS GLU SER LEU VAL ALA PHE ALA MET GLN SEQRES 18 A 783 HIS VAL ARG SER THR VAL THR GLU LEU SER THR GLY ASN SEQRES 19 A 783 PHE VAL ASN ALA ILE GLU THR ALA PHE ALA ALA GLY VAL SEQRES 20 A 783 GLY TRP LEU ILE THR PHE CYS SER LYS GLY GLU ASP CYS SEQRES 21 A 783 LEU THR SER GLN THR ARG LEU ARG LEU SER GLY MET LEU SEQRES 22 A 783 ASP GLY LEU VAL ASN VAL GLY TRP VAL ASP CYS ASP ALA SEQRES 23 A 783 GLN ASP SER LEU CYS LYS SER LEU ASP THR THR ALA SER SEQRES 24 A 783 THR THR ALA TYR PHE PRO PRO GLY ALA THR LEU ASN ASP SEQRES 25 A 783 ARG GLU LYS SER SER VAL LEU PHE LEU ASN SER LEU ASP SEQRES 26 A 783 ALA LYS GLU ILE TYR MET GLU ILE ILE HIS ASN LEU PRO SEQRES 27 A 783 ASP PHE GLU LEU LEU SER ALA ASN GLN LEU GLU ASP ARG SEQRES 28 A 783 LEU ALA HIS HIS ARG TRP LEU VAL PHE PHE HIS PHE GLY SEQRES 29 A 783 LYS ASN GLU ASN ALA ASN ASP PRO GLU LEU LYS LYS LEU SEQRES 30 A 783 LYS THR LEU LEU LYS ASN GLU HIS ILE GLN VAL VAL ARG SEQRES 31 A 783 PHE ASP CYS SER SER ALA PRO GLY ILE CYS SER ASP LEU SEQRES 32 A 783 TYR VAL PHE GLN PRO SER LEU ALA VAL PHE LYS GLY GLN SEQRES 33 A 783 GLY THR LYS GLU TYR GLU ILE HIS HIS GLY LYS LYS ILE SEQRES 34 A 783 LEU TYR ASP ILE LEU ALA PHE ALA LYS GLU SER VAL ASN SEQRES 35 A 783 SER HIS VAL THR THR LEU GLY PRO GLN ASN PHE PRO ALA SEQRES 36 A 783 SER ASP LYS GLU PRO TRP LEU VAL ASP PHE PHE ALA PRO SEQRES 37 A 783 TRP SER PRO PRO SER ARG ALA LEU LEU PRO GLU LEU ARG SEQRES 38 A 783 LYS ALA SER THR LEU LEU TYR GLY GLN LEU LYS VAL GLY SEQRES 39 A 783 THR LEU ASP CYS THR ILE HIS GLU GLY LEU CYS ASN MET SEQRES 40 A 783 TYR ASN ILE GLN ALA TYR PRO THR THR VAL VAL PHE ASN SEQRES 41 A 783 GLN SER SER ILE HIS GLU TYR GLU GLY HIS HIS SER ALA SEQRES 42 A 783 GLU GLN ILE LEU GLU PHE ILE GLU ASP LEU ARG ASN PRO SEQRES 43 A 783 SER VAL VAL SER LEU THR PRO SER THR PHE ASN GLU LEU SEQRES 44 A 783 VAL LYS GLN ARG LYS HIS ASP GLU VAL TRP MET VAL ASP SEQRES 45 A 783 PHE TYR SER PRO TRP SER HIS PRO SER GLN VAL LEU MET SEQRES 46 A 783 PRO GLU TRP LYS ARG MET ALA ARG THR LEU THR GLY LEU SEQRES 47 A 783 ILE ASN VAL GLY SER VAL ASP CYS GLN GLN TYR HIS SER SEQRES 48 A 783 PHE CYS THR GLN GLU ASN VAL GLN ARG TYR PRO GLU ILE SEQRES 49 A 783 ARG PHE TYR PRO GLN LYS SER SER LYS ALA TYR GLN TYR SEQRES 50 A 783 HIS SER TYR ASN GLY TRP ASN ARG ASP ALA TYR SER LEU SEQRES 51 A 783 ARG SER TRP GLY LEU GLY PHE LEU PRO GLN ALA SER ILE SEQRES 52 A 783 ASP LEU THR PRO GLN THR PHE ASN GLU LYS VAL LEU GLN SEQRES 53 A 783 GLY LYS THR HIS TRP VAL VAL ASP PHE TYR ALA PRO TRP SEQRES 54 A 783 SER GLY PRO SER GLN ASN PHE ALA PRO GLU PHE GLU LEU SEQRES 55 A 783 LEU ALA ARG MET ILE LYS GLY LYS VAL ARG ALA GLY LYS SEQRES 56 A 783 VAL ASP CYS GLN ALA TYR PRO GLN THR CYS GLN LYS ALA SEQRES 57 A 783 GLY ILE LYS ALA TYR PRO SER VAL LYS LEU TYR GLN TYR SEQRES 58 A 783 GLU ARG ALA LYS LYS SER ILE TRP GLU GLU GLN ILE ASN SEQRES 59 A 783 SER ARG ASP ALA LYS THR ILE ALA ALA LEU ILE TYR GLY SEQRES 60 A 783 LYS LEU GLU THR LEU GLN SER GLN VAL LYS ARG ASN LYS SEQRES 61 A 783 ASP GLU LEU HET 1PS A 801 13 HET CL A 802 1 HETNAM 1PS 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE HETNAM CL CHLORIDE ION HETSYN 1PS 1-(3-SULFOPROPYL) PYRIDINIUM; PPS FORMUL 2 1PS C8 H11 N O3 S FORMUL 3 CL CL 1- FORMUL 4 HOH *119(H2 O) HELIX 1 AA1 GLN A 34 GLY A 41 1 8 HELIX 2 AA2 SER A 47 HIS A 63 1 17 HELIX 3 AA3 ASN A 72 ASP A 89 1 18 HELIX 4 AA4 ASP A 89 TYR A 99 1 11 HELIX 5 AA5 GLY A 100 LEU A 104 5 5 HELIX 6 AA6 SER A 114 ASP A 121 1 8 HELIX 7 AA7 GLU A 135 ASN A 144 1 10 HELIX 8 AA8 SER A 158 VAL A 175 1 18 HELIX 9 AA9 ASP A 189 LYS A 196 1 8 HELIX 10 AB1 SER A 221 GLN A 231 1 11 HELIX 11 AB2 SER A 241 GLY A 256 1 16 HELIX 12 AB3 THR A 272 LEU A 283 1 12 HELIX 13 AB4 GLN A 297 LYS A 302 1 6 HELIX 14 AB5 ASP A 335 LEU A 347 1 13 HELIX 15 AB6 SER A 354 LEU A 362 1 9 HELIX 16 AB7 ASP A 381 LYS A 385 5 5 HELIX 17 AB8 LYS A 386 LEU A 391 1 6 HELIX 18 AB9 LYS A 392 GLU A 394 5 3 HELIX 19 AC1 ALA A 406 LEU A 413 1 8 HELIX 20 AC2 ILE A 439 ASN A 452 1 14 HELIX 21 AC3 GLY A 459 PHE A 463 5 5 HELIX 22 AC4 SER A 480 LEU A 497 1 18 HELIX 23 AC5 HIS A 511 TYR A 518 1 8 HELIX 24 AC6 SER A 542 ASN A 555 1 14 HELIX 25 AC7 THR A 562 VAL A 570 1 9 HELIX 26 AC8 SER A 588 LEU A 605 1 18 HELIX 27 AC9 TYR A 619 GLU A 626 1 8 HELIX 28 AD1 ASP A 656 GLY A 666 1 11 HELIX 29 AD2 THR A 676 VAL A 684 1 9 HELIX 30 AD3 SER A 700 LYS A 718 1 19 HELIX 31 AD4 TYR A 731 GLY A 739 1 9 HELIX 32 AD5 ASP A 767 THR A 781 1 15 SHEET 1 AA1 5 ILE A 131 THR A 133 0 SHEET 2 AA1 5 ARG A 180 ASN A 185 1 O ILE A 181 N ILE A 132 SHEET 3 AA1 5 TRP A 149 TYR A 154 1 N ASN A 152 O GLY A 182 SHEET 4 AA1 5 SER A 203 PHE A 207 -1 O PHE A 207 N TRP A 149 SHEET 5 AA1 5 VAL A 214 TYR A 216 -1 O VAL A 214 N ILE A 206 SHEET 1 AA2 5 VAL A 237 GLU A 239 0 SHEET 2 AA2 5 VAL A 287 ASP A 293 1 O VAL A 289 N THR A 238 SHEET 3 AA2 5 GLY A 258 CYS A 264 1 N LEU A 260 O ASN A 288 SHEET 4 AA2 5 THR A 310 PHE A 314 -1 O PHE A 314 N TRP A 259 SHEET 5 AA2 5 LEU A 329 LEU A 331 -1 O LEU A 331 N THR A 311 SHEET 1 AA3 5 GLU A 351 LEU A 353 0 SHEET 2 AA3 5 ILE A 396 ASP A 402 1 O ARG A 400 N GLU A 351 SHEET 3 AA3 5 ARG A 366 HIS A 372 1 N LEU A 368 O GLN A 397 SHEET 4 AA3 5 SER A 419 PHE A 423 -1 O SER A 419 N PHE A 371 SHEET 5 AA3 5 TYR A 431 ILE A 433 -1 O GLU A 432 N VAL A 422 SHEET 1 AA4 5 VAL A 455 THR A 457 0 SHEET 2 AA4 5 LYS A 502 ASP A 507 1 O VAL A 503 N THR A 456 SHEET 3 AA4 5 TRP A 471 PHE A 476 1 N LEU A 472 O LYS A 502 SHEET 4 AA4 5 THR A 525 ASN A 530 -1 O PHE A 529 N TRP A 471 SHEET 5 AA4 5 SER A 533 GLU A 536 -1 O HIS A 535 N VAL A 528 SHEET 1 AA5 5 VAL A 559 LEU A 561 0 SHEET 2 AA5 5 ASN A 610 ASP A 615 1 O SER A 613 N LEU A 561 SHEET 3 AA5 5 TRP A 579 TYR A 584 1 N MET A 580 O GLY A 612 SHEET 4 AA5 5 GLU A 633 TYR A 637 -1 O TYR A 637 N TRP A 579 SHEET 5 AA5 5 HIS A 648 SER A 649 -1 O HIS A 648 N PHE A 636 SHEET 1 AA6 5 ILE A 673 ASP A 674 0 SHEET 2 AA6 5 ARG A 722 ASP A 727 1 O LYS A 725 N ILE A 673 SHEET 3 AA6 5 TRP A 691 TYR A 696 1 N VAL A 692 O GLY A 724 SHEET 4 AA6 5 SER A 745 GLU A 752 -1 O TYR A 749 N TRP A 691 SHEET 5 AA6 5 SER A 757 ILE A 763 -1 O TRP A 759 N GLN A 750 SSBOND 1 CYS A 186 CYS A 193 1555 1555 2.02 SSBOND 2 CYS A 294 CYS A 301 1555 1555 2.03 SSBOND 3 CYS A 403 CYS A 410 1555 1555 2.03 SSBOND 4 CYS A 508 CYS A 515 1555 1555 2.03 SSBOND 5 CYS A 616 CYS A 623 1555 1555 2.03 SSBOND 6 CYS A 728 CYS A 735 1555 1555 2.03 CISPEP 1 TYR A 201 PRO A 202 0 -1.01 CISPEP 2 TYR A 523 PRO A 524 0 1.71 CISPEP 3 TYR A 631 PRO A 632 0 -5.32 CISPEP 4 TYR A 743 PRO A 744 0 -1.51 SITE 1 AC1 3 TYR A 112 GLU A 113 SER A 114 SITE 1 AC2 1 SER A 158 CRYST1 91.990 52.970 92.900 90.00 113.54 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010871 0.000000 0.004735 0.00000 SCALE2 0.000000 0.018879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011741 0.00000