HEADER SUGAR BINDING PROTEIN, PEPTIDE BINDING P27-SEP-15 5AZ6 TITLE CRYSTAL STRUCTURE OF MBP-TOM20 FUSION PROTEIN WITH A 2-RESIDUE SPACER TITLE 2 IN THE CONNECTOR HELIX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,MITOCHONDRIAL IMPORT COMPND 3 RECEPTOR SUBUNIT TOM20 HOMOLOG; COMPND 4 CHAIN: B, A; COMPND 5 FRAGMENT: UNP RESIDUES 27-394,UNP RESIDUES 65-126; COMPND 6 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN,MITOCHONDRIAL 20 KDA COMPND 7 OUTER MEMBRANE PROTEIN,OUTER MITOCHONDRIAL MEMBRANE RECEPTOR TOM20; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: THE FUSION PROTEIN OF 1-369 MALTOSE BINDING PROTEIN, COMPND 11 370-371 LINKER, AND 372-433 TOM20 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12), RATTUS SOURCE 3 NORVEGICUS; SOURCE 4 ORGANISM_COMMON: RAT; SOURCE 5 ORGANISM_TAXID: 83333, 10116; SOURCE 6 STRAIN: K12; SOURCE 7 GENE: MALE, B4034, JW3994, TOMM20; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FUSION PROTEIN, SUGAR BINDING PROTEIN, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.MATSUOKA,D.KOHDA REVDAT 5 08-NOV-23 5AZ6 1 HETSYN REVDAT 4 29-JUL-20 5AZ6 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 26-FEB-20 5AZ6 1 JRNL REMARK REVDAT 2 09-MAR-16 5AZ6 1 JRNL REVDAT 1 13-JAN-16 5AZ6 0 JRNL AUTH R.MATSUOKA,A.SHIMADA,Y.KOMURO,Y.SUGITA,D.KOHDA JRNL TITL RATIONAL DESIGN OF CRYSTAL CONTACT-FREE SPACE IN PROTEIN JRNL TITL 2 CRYSTALS FOR ANALYZING SPATIAL DISTRIBUTION OF MOTIONS JRNL TITL 3 WITHIN PROTEIN MOLECULES. JRNL REF PROTEIN SCI. V. 25 754 2016 JRNL REFN ESSN 1469-896X JRNL PMID 26694222 JRNL DOI 10.1002/PRO.2867 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 34036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1784 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2321 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.531 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.480 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6958 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6692 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9450 ; 1.718 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15476 ; 1.124 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 864 ; 7.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 304 ;40.030 ;26.184 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1190 ;20.447 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.131 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1050 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7846 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1462 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3462 ; 3.966 ; 5.814 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3461 ; 3.963 ; 5.813 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4324 ; 5.972 ; 8.714 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4325 ; 5.973 ; 8.715 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3496 ; 4.139 ; 6.178 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3497 ; 4.138 ; 6.178 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5127 ; 6.261 ; 9.079 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7923 ; 9.740 ;47.100 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7924 ; 9.739 ;47.099 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5AZ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1300000237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35889 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.790 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ANF, 2V1T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.2M DISODIUM MALONATE, REMARK 280 0.1M HEPES (PH7.3), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.95300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.61350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.95300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.61350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 133 N ASP B 137 1.92 REMARK 500 O THR B 129 OG1 THR B 250 1.92 REMARK 500 O GLU A 5 OG SER A 271 1.97 REMARK 500 O LYS B 128 N TRP B 130 1.99 REMARK 500 O GLU A 5 CB SER A 271 2.08 REMARK 500 O ASN A 350 O GLY A 354 2.14 REMARK 500 O GLU A 173 N GLY A 175 2.14 REMARK 500 O GLU A 5 N PRO A 272 2.15 REMARK 500 O GLU A 5 C SER A 271 2.17 REMARK 500 N GLY B 175 O ASN A 174 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 272 CA PRO A 272 C 0.123 REMARK 500 ASN A 273 CA ASN A 273 C 0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 173 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 GLU A 5 CA - C - N ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 PRO A 272 C - N - CA ANGL. DEV. = 11.3 DEGREES REMARK 500 PRO A 272 C - N - CD ANGL. DEV. = -14.2 DEGREES REMARK 500 PRO A 272 N - CA - C ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 2 70.83 36.63 REMARK 500 GLU B 4 -90.26 -117.70 REMARK 500 GLU B 5 -43.64 -170.48 REMARK 500 THR B 32 -39.20 -155.69 REMARK 500 THR B 54 -38.73 -37.79 REMARK 500 ASP B 56 -163.11 -105.57 REMARK 500 LYS B 84 -55.39 102.76 REMARK 500 ILE B 109 -51.95 -126.24 REMARK 500 LEU B 123 80.97 -157.03 REMARK 500 ASN B 125 93.01 61.06 REMARK 500 PRO B 127 108.46 -49.20 REMARK 500 THR B 129 7.79 23.94 REMARK 500 TRP B 130 -60.87 53.26 REMARK 500 LYS B 145 15.07 80.63 REMARK 500 SER B 146 110.36 80.55 REMARK 500 ALA B 169 -70.22 -75.13 REMARK 500 ASN B 174 57.28 35.99 REMARK 500 LYS B 180 -18.65 95.52 REMARK 500 ASP B 210 -168.37 -113.99 REMARK 500 TYR B 284 -60.75 -124.31 REMARK 500 ASP B 392 52.65 -96.66 REMARK 500 LYS A 2 94.22 -172.74 REMARK 500 GLU A 4 44.00 74.52 REMARK 500 GLU A 5 2.50 -151.11 REMARK 500 LEU A 8 64.62 110.07 REMARK 500 HIS A 40 68.24 -114.43 REMARK 500 LEU A 76 -55.70 60.51 REMARK 500 THR A 81 118.76 -166.12 REMARK 500 ILE A 109 -54.19 -127.83 REMARK 500 ALA A 169 -74.88 -74.04 REMARK 500 ASN A 174 41.35 13.52 REMARK 500 LYS A 240 -34.83 62.38 REMARK 500 SER A 271 160.73 142.35 REMARK 500 ARG A 355 -43.13 80.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 31 THR B 32 -149.72 REMARK 500 TRP B 130 GLU B 131 -123.20 REMARK 500 GLU B 131 GLU B 132 142.43 REMARK 500 GLY B 144 LYS B 145 -147.53 REMARK 500 LYS B 180 ASP B 181 149.95 REMARK 500 SER A 239 LYS A 240 139.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AZ7 RELATED DB: PDB REMARK 900 RELATED ID: 5AZ8 RELATED DB: PDB REMARK 900 RELATED ID: 5AZ9 RELATED DB: PDB REMARK 900 RELATED ID: 5AZA RELATED DB: PDB DBREF 5AZ6 B 2 369 UNP P0AEX9 MALE_ECOLI 27 394 DBREF 5AZ6 B 372 433 UNP Q62760 TOM20_RAT 65 126 DBREF 5AZ6 A 2 369 UNP P0AEX9 MALE_ECOLI 27 394 DBREF 5AZ6 A 372 433 UNP Q62760 TOM20_RAT 65 126 SEQADV 5AZ6 MET B 1 UNP P0AEX9 INITIATING METHIONINE SEQADV 5AZ6 VAL B 313 UNP P0AEX9 ALA 338 ENGINEERED MUTATION SEQADV 5AZ6 LYS B 370 UNP P0AEX9 LINKER SEQADV 5AZ6 GLU B 371 UNP P0AEX9 LINKER SEQADV 5AZ6 MET A 1 UNP P0AEX9 INITIATING METHIONINE SEQADV 5AZ6 VAL A 313 UNP P0AEX9 ALA 338 ENGINEERED MUTATION SEQADV 5AZ6 LYS A 370 UNP P0AEX9 LINKER SEQADV 5AZ6 GLU A 371 UNP P0AEX9 LINKER SEQRES 1 B 433 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 B 433 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 B 433 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 B 433 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 B 433 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 B 433 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 B 433 GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR SEQRES 8 B 433 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 B 433 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 B 433 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 B 433 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 B 433 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 B 433 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 B 433 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 B 433 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 B 433 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 B 433 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 B 433 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 B 433 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL SEQRES 20 B 433 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 B 433 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 B 433 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 B 433 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 B 433 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 B 433 VAL LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 B 433 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 B 433 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 B 433 ALA SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP SEQRES 29 B 433 ALA GLN THR ARG ILE LYS GLU ALA VAL GLN LYS PHE PHE SEQRES 30 B 433 LEU GLU GLU ILE GLN LEU GLY GLU GLU LEU LEU ALA GLN SEQRES 31 B 433 GLY ASP TYR GLU LYS GLY VAL ASP HIS LEU THR ASN ALA SEQRES 32 B 433 ILE ALA VAL CYS GLY GLN PRO GLN GLN LEU LEU GLN VAL SEQRES 33 B 433 LEU GLN GLN THR LEU PRO PRO PRO VAL PHE GLN MET LEU SEQRES 34 B 433 LEU THR LYS LEU SEQRES 1 A 433 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 433 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 433 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 433 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 433 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 433 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 433 GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 433 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 433 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 433 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 433 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 433 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 433 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 433 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 433 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 433 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 433 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 433 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 433 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 433 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 433 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 433 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 433 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 433 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 433 VAL LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 433 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 433 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 433 ALA SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP SEQRES 29 A 433 ALA GLN THR ARG ILE LYS GLU ALA VAL GLN LYS PHE PHE SEQRES 30 A 433 LEU GLU GLU ILE GLN LEU GLY GLU GLU LEU LEU ALA GLN SEQRES 31 A 433 GLY ASP TYR GLU LYS GLY VAL ASP HIS LEU THR ASN ALA SEQRES 32 A 433 ILE ALA VAL CYS GLY GLN PRO GLN GLN LEU LEU GLN VAL SEQRES 33 A 433 LEU GLN GLN THR LEU PRO PRO PRO VAL PHE GLN MET LEU SEQRES 34 A 433 LEU THR LYS LEU HET GLC C 1 12 HET GLC C 2 11 HET GLC D 1 12 HET GLC D 2 11 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 4(C6 H12 O6) FORMUL 5 HOH *21(H2 O) HELIX 1 AA1 GLY B 17 GLY B 33 1 17 HELIX 2 AA2 LYS B 43 GLY B 55 1 13 HELIX 3 AA3 ARG B 67 SER B 74 1 8 HELIX 4 AA4 PHE B 86 LEU B 90 5 5 HELIX 5 AA5 TYR B 91 VAL B 98 1 8 HELIX 6 AA6 GLU B 132 LYS B 143 1 12 HELIX 7 AA7 GLU B 154 ALA B 163 1 10 HELIX 8 AA8 ASN B 186 ASN B 202 1 17 HELIX 9 AA9 ASP B 210 LYS B 220 1 11 HELIX 10 AB1 GLY B 229 TRP B 231 5 3 HELIX 11 AB2 ALA B 232 LYS B 240 1 9 HELIX 12 AB3 ASN B 273 TYR B 284 1 12 HELIX 13 AB4 THR B 287 LYS B 298 1 12 HELIX 14 AB5 LEU B 305 VAL B 313 1 9 HELIX 15 AB6 ASP B 315 GLY B 328 1 14 HELIX 16 AB7 GLN B 336 GLY B 354 1 19 HELIX 17 AB8 THR B 357 GLN B 390 1 34 HELIX 18 AB9 ASP B 392 VAL B 406 1 15 HELIX 19 AC1 GLN B 409 LEU B 421 1 13 HELIX 20 AC2 PRO B 422 LEU B 433 1 12 HELIX 21 AC3 GLY A 17 GLY A 33 1 17 HELIX 22 AC4 LYS A 43 GLY A 55 1 13 HELIX 23 AC5 ARG A 67 GLY A 75 1 9 HELIX 24 AC6 ASP A 83 LYS A 89 1 7 HELIX 25 AC7 TYR A 91 VAL A 98 1 8 HELIX 26 AC8 THR A 129 GLU A 131 5 3 HELIX 27 AC9 GLU A 132 ALA A 142 1 11 HELIX 28 AD1 GLU A 154 ASP A 165 1 12 HELIX 29 AD2 ASN A 186 ASN A 202 1 17 HELIX 30 AD3 ASP A 210 LYS A 220 1 11 HELIX 31 AD4 GLY A 229 TRP A 231 5 3 HELIX 32 AD5 ALA A 232 SER A 239 1 8 HELIX 33 AD6 ASN A 273 TYR A 284 1 12 HELIX 34 AD7 THR A 287 LYS A 298 1 12 HELIX 35 AD8 LEU A 305 VAL A 313 1 9 HELIX 36 AD9 ASP A 315 GLY A 328 1 14 HELIX 37 AE1 GLN A 336 SER A 353 1 18 HELIX 38 AE2 THR A 357 GLN A 390 1 34 HELIX 39 AE3 ASP A 392 CYS A 407 1 16 HELIX 40 AE4 GLN A 409 LEU A 421 1 13 HELIX 41 AE5 PRO A 422 THR A 431 1 10 SHEET 1 AA1 6 VAL B 36 GLU B 39 0 SHEET 2 AA1 6 LEU B 8 TRP B 11 1 N LEU B 8 O THR B 37 SHEET 3 AA1 6 ILE B 60 ALA B 64 1 O PHE B 62 N TRP B 11 SHEET 4 AA1 6 PHE B 259 ILE B 267 -1 O SER B 264 N TRP B 63 SHEET 5 AA1 6 TYR B 107 GLU B 112 -1 N GLU B 112 O GLY B 261 SHEET 6 AA1 6 ALA B 302 VAL B 303 -1 O ALA B 302 N VAL B 111 SHEET 1 AA2 5 VAL B 36 GLU B 39 0 SHEET 2 AA2 5 LEU B 8 TRP B 11 1 N LEU B 8 O THR B 37 SHEET 3 AA2 5 ILE B 60 ALA B 64 1 O PHE B 62 N TRP B 11 SHEET 4 AA2 5 PHE B 259 ILE B 267 -1 O SER B 264 N TRP B 63 SHEET 5 AA2 5 GLU B 329 ILE B 330 1 O GLU B 329 N VAL B 260 SHEET 1 AA3 2 ARG B 99 TYR B 100 0 SHEET 2 AA3 2 LYS B 103 LEU B 104 -1 O LYS B 103 N TYR B 100 SHEET 1 AA4 3 MET B 225 ASN B 228 0 SHEET 2 AA4 3 SER B 115 ASN B 119 -1 N ILE B 117 O THR B 226 SHEET 3 AA4 3 TYR B 243 THR B 246 -1 O THR B 246 N LEU B 116 SHEET 1 AA5 2 TYR B 168 TYR B 172 0 SHEET 2 AA5 2 TYR B 177 GLY B 183 -1 O ASP B 178 N LYS B 171 SHEET 1 AA6 6 THR A 37 GLU A 39 0 SHEET 2 AA6 6 VAL A 9 TRP A 11 1 N ILE A 10 O GLU A 39 SHEET 3 AA6 6 ILE A 60 ALA A 64 1 O PHE A 62 N TRP A 11 SHEET 4 AA6 6 PHE A 259 ILE A 267 -1 O SER A 264 N TRP A 63 SHEET 5 AA6 6 TYR A 107 GLU A 112 -1 N GLU A 112 O GLY A 261 SHEET 6 AA6 6 ALA A 302 VAL A 303 -1 O ALA A 302 N VAL A 111 SHEET 1 AA7 5 THR A 37 GLU A 39 0 SHEET 2 AA7 5 VAL A 9 TRP A 11 1 N ILE A 10 O GLU A 39 SHEET 3 AA7 5 ILE A 60 ALA A 64 1 O PHE A 62 N TRP A 11 SHEET 4 AA7 5 PHE A 259 ILE A 267 -1 O SER A 264 N TRP A 63 SHEET 5 AA7 5 GLU A 329 ILE A 330 1 O GLU A 329 N VAL A 260 SHEET 1 AA8 2 ARG A 99 TYR A 100 0 SHEET 2 AA8 2 LYS A 103 LEU A 104 -1 O LYS A 103 N TYR A 100 SHEET 1 AA9 4 SER A 146 LEU A 148 0 SHEET 2 AA9 4 THR A 223 ASN A 228 1 O ALA A 224 N SER A 146 SHEET 3 AA9 4 SER A 115 ASN A 119 -1 N ILE A 117 O THR A 226 SHEET 4 AA9 4 TYR A 243 THR A 246 -1 O GLY A 244 N TYR A 118 SHEET 1 AB1 2 TYR A 168 GLU A 173 0 SHEET 2 AB1 2 LYS A 176 GLY A 183 -1 O LYS A 176 N GLU A 173 SHEET 1 AB2 2 THR A 250 PHE A 251 0 SHEET 2 AB2 2 GLN A 254 PRO A 255 -1 O GLN A 254 N PHE A 251 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.42 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.43 CISPEP 1 ILE B 3 GLU B 4 0 -26.58 CISPEP 2 ILE A 3 GLU A 4 0 9.85 CRYST1 129.906 81.227 109.890 90.00 106.38 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007698 0.000000 0.002263 0.00000 SCALE2 0.000000 0.012311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009485 0.00000