HEADER SUGAR BINDING PROTEIN, PEPTIDE BINDING P27-SEP-15 5AZ9 TITLE CRYSTAL STRUCTURE OF (5-RESIDUE DELETED)MBP-TOM20 FUSION PROTEIN TITLE 2 TETHERED WITH ALDH PRESEQUENCE VIA A DISULFIDE BOND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,MITOCHONDRIAL IMPORT COMPND 3 RECEPTOR SUBUNIT TOM20 HOMOLOG; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 27-394,UNP RESIDUES 65-126; COMPND 6 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN,MITOCHONDRIAL 20 KDA COMPND 7 OUTER MEMBRANE PROTEIN,OUTER MITOCHONDRIAL MEMBRANE RECEPTOR TOM20; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: THE FUSION PROTEIN OF 1-364 MALTOSE BINDING PROTEIN, COMPND 11 365-368 LINKER AND 369-430 TOM20 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12), RATTUS SOURCE 3 NORVEGICUS; SOURCE 4 ORGANISM_COMMON: RAT; SOURCE 5 ORGANISM_TAXID: 83333, 10116; SOURCE 6 STRAIN: K12; SOURCE 7 GENE: MALE, B4034, JW3994, TOMM20; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FUSION PROTEIN COMPLEX, SUGAR BINDING PROTEIN, PEPTIDE BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.MATSUOKA,D.KOHDA REVDAT 4 08-NOV-23 5AZ9 1 REMARK REVDAT 3 26-FEB-20 5AZ9 1 JRNL REMARK REVDAT 2 09-MAR-16 5AZ9 1 JRNL REVDAT 1 13-JAN-16 5AZ9 0 JRNL AUTH R.MATSUOKA,A.SHIMADA,Y.KOMURO,Y.SUGITA,D.KOHDA JRNL TITL RATIONAL DESIGN OF CRYSTAL CONTACT-FREE SPACE IN PROTEIN JRNL TITL 2 CRYSTALS FOR ANALYZING SPATIAL DISTRIBUTION OF MOTIONS JRNL TITL 3 WITHIN PROTEIN MOLECULES. JRNL REF PROTEIN SCI. V. 25 754 2016 JRNL REFN ESSN 1469-896X JRNL PMID 26694222 JRNL DOI 10.1002/PRO.2867 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2351 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3251 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3403 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3288 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4618 ; 1.895 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7605 ; 0.955 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 6.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;34.689 ;26.107 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 589 ;17.471 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;18.315 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 509 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3842 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 720 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1698 ; 3.132 ; 3.378 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1697 ; 3.133 ; 3.376 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2119 ; 4.264 ; 5.043 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2120 ; 4.264 ; 5.045 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1703 ; 4.065 ; 3.812 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1704 ; 4.064 ; 3.813 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2499 ; 6.027 ; 5.527 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4100 ; 7.475 ;27.923 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4035 ; 7.467 ;27.845 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5AZ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1300000240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46512 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.640 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ANF, 2V1T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M POTASSIUM NITRATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.23800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.69800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.23800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.69800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 386 REMARK 465 GLN A 387 REMARK 465 GLY A 388 REMARK 465 ASP A 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 363 OE2 GLU A 366 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 363 NH1 ARG A 363 2755 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 363 CG - CD - NE ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 104 -52.86 -120.37 REMARK 500 ALA A 137 1.81 -60.70 REMARK 500 ASN A 146 103.85 -58.77 REMARK 500 ALA A 164 -73.22 -78.65 REMARK 500 ASP A 205 -167.88 -123.87 REMARK 500 ASN A 328 41.46 -93.28 REMARK 500 GLU A 391 144.22 -16.20 REMARK 500 LYS A 392 -86.21 88.08 REMARK 500 GLN A 416 -82.03 -64.33 REMARK 500 LEU A 418 -63.89 -149.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 391 LYS A 392 -34.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AZ6 RELATED DB: PDB REMARK 900 RELATED ID: 5AZ7 RELATED DB: PDB REMARK 900 RELATED ID: 5AZ8 RELATED DB: PDB REMARK 900 RELATED ID: 5AZA RELATED DB: PDB DBREF 5AZ9 A 2 364 UNP P0AEX9 MALE_ECOLI 27 394 DBREF 5AZ9 A 369 430 UNP Q62760 TOM20_RAT 65 126 SEQADV 5AZ9 MET A 1 UNP P0AEX9 INITIATING METHIONINE SEQADV 5AZ9 A UNP P0AEX9 ALA 77 DELETION SEQADV 5AZ9 A UNP P0AEX9 ALA 78 DELETION SEQADV 5AZ9 A UNP P0AEX9 THR 79 DELETION SEQADV 5AZ9 A UNP P0AEX9 GLY 80 DELETION SEQADV 5AZ9 A UNP P0AEX9 ASP 81 DELETION SEQADV 5AZ9 VAL A 308 UNP P0AEX9 ALA 338 ENGINEERED MUTATION SEQADV 5AZ9 LYS A 365 UNP P0AEX9 LINKER SEQADV 5AZ9 GLU A 366 UNP P0AEX9 LINKER SEQADV 5AZ9 ALA A 367 UNP P0AEX9 LINKER SEQADV 5AZ9 LEU A 368 UNP P0AEX9 LINKER SEQRES 1 A 430 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 430 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 430 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 430 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL GLY SEQRES 5 A 430 PRO ASP ILE ILE PHE TRP ALA HIS ASP ARG PHE GLY GLY SEQRES 6 A 430 TYR ALA GLN SER GLY LEU LEU ALA GLU ILE THR PRO ASP SEQRES 7 A 430 LYS ALA PHE GLN ASP LYS LEU TYR PRO PHE THR TRP ASP SEQRES 8 A 430 ALA VAL ARG TYR ASN GLY LYS LEU ILE ALA TYR PRO ILE SEQRES 9 A 430 ALA VAL GLU ALA LEU SER LEU ILE TYR ASN LYS ASP LEU SEQRES 10 A 430 LEU PRO ASN PRO PRO LYS THR TRP GLU GLU ILE PRO ALA SEQRES 11 A 430 LEU ASP LYS GLU LEU LYS ALA LYS GLY LYS SER ALA LEU SEQRES 12 A 430 MET PHE ASN LEU GLN GLU PRO TYR PHE THR TRP PRO LEU SEQRES 13 A 430 ILE ALA ALA ASP GLY GLY TYR ALA PHE LYS TYR GLU ASN SEQRES 14 A 430 GLY LYS TYR ASP ILE LYS ASP VAL GLY VAL ASP ASN ALA SEQRES 15 A 430 GLY ALA LYS ALA GLY LEU THR PHE LEU VAL ASP LEU ILE SEQRES 16 A 430 LYS ASN LYS HIS MET ASN ALA ASP THR ASP TYR SER ILE SEQRES 17 A 430 ALA GLU ALA ALA PHE ASN LYS GLY GLU THR ALA MET THR SEQRES 18 A 430 ILE ASN GLY PRO TRP ALA TRP SER ASN ILE ASP THR SER SEQRES 19 A 430 LYS VAL ASN TYR GLY VAL THR VAL LEU PRO THR PHE LYS SEQRES 20 A 430 GLY GLN PRO SER LYS PRO PHE VAL GLY VAL LEU SER ALA SEQRES 21 A 430 GLY ILE ASN ALA ALA SER PRO ASN LYS GLU LEU ALA LYS SEQRES 22 A 430 GLU PHE LEU GLU ASN TYR LEU LEU THR ASP GLU GLY LEU SEQRES 23 A 430 GLU ALA VAL ASN LYS ASP LYS PRO LEU GLY ALA VAL ALA SEQRES 24 A 430 LEU LYS SER TYR GLU GLU GLU LEU VAL LYS ASP PRO ARG SEQRES 25 A 430 ILE ALA ALA THR MET GLU ASN ALA GLN LYS GLY GLU ILE SEQRES 26 A 430 MET PRO ASN ILE PRO GLN MET SER ALA PHE TRP TYR ALA SEQRES 27 A 430 VAL ARG THR ALA VAL ILE ASN ALA ALA SER GLY ARG GLN SEQRES 28 A 430 THR VAL ASP GLU ALA LEU LYS ASP ALA GLN THR ARG ILE SEQRES 29 A 430 LYS GLU ALA LEU ALA VAL GLN LYS PHE PHE LEU GLU GLU SEQRES 30 A 430 ILE GLN LEU GLY GLU GLU LEU LEU ALA GLN GLY ASP TYR SEQRES 31 A 430 GLU LYS GLY VAL ASP HIS LEU THR ASN ALA ILE ALA VAL SEQRES 32 A 430 CYS GLY GLN PRO GLN GLN LEU LEU GLN VAL LEU GLN GLN SEQRES 33 A 430 THR LEU PRO PRO PRO VAL PHE GLN MET LEU LEU THR LYS SEQRES 34 A 430 LEU FORMUL 2 HOH *172(H2 O) HELIX 1 AA1 GLY A 17 GLY A 33 1 17 HELIX 2 AA2 LYS A 43 PHE A 48 1 6 HELIX 3 AA3 ARG A 62 SER A 69 1 8 HELIX 4 AA4 ASP A 78 ASP A 83 1 6 HELIX 5 AA5 TYR A 86 ASP A 91 1 6 HELIX 6 AA6 THR A 124 GLU A 126 5 3 HELIX 7 AA7 GLU A 127 ALA A 137 1 11 HELIX 8 AA8 GLU A 149 ALA A 159 1 11 HELIX 9 AA9 ASN A 181 ASN A 197 1 17 HELIX 10 AB1 ASP A 205 LYS A 215 1 11 HELIX 11 AB2 GLY A 224 TRP A 226 5 3 HELIX 12 AB3 ALA A 227 LYS A 235 1 9 HELIX 13 AB4 ASN A 268 TYR A 279 1 12 HELIX 14 AB5 THR A 282 LYS A 293 1 12 HELIX 15 AB6 LEU A 300 VAL A 308 1 9 HELIX 16 AB7 ASP A 310 GLY A 323 1 14 HELIX 17 AB8 GLN A 331 SER A 348 1 18 HELIX 18 AB9 THR A 352 GLU A 383 1 32 HELIX 19 AC1 GLY A 393 CYS A 404 1 12 HELIX 20 AC2 PRO A 407 THR A 417 1 11 HELIX 21 AC3 PRO A 419 LEU A 430 1 12 SHEET 1 AA1 6 VAL A 36 GLU A 39 0 SHEET 2 AA1 6 LEU A 8 TRP A 11 1 N ILE A 10 O GLU A 39 SHEET 3 AA1 6 ILE A 55 ALA A 59 1 O PHE A 57 N TRP A 11 SHEET 4 AA1 6 PHE A 254 ILE A 262 -1 O GLY A 261 N ILE A 56 SHEET 5 AA1 6 TYR A 102 GLU A 107 -1 N ILE A 104 O LEU A 258 SHEET 6 AA1 6 ALA A 297 VAL A 298 -1 O ALA A 297 N VAL A 106 SHEET 1 AA2 5 VAL A 36 GLU A 39 0 SHEET 2 AA2 5 LEU A 8 TRP A 11 1 N ILE A 10 O GLU A 39 SHEET 3 AA2 5 ILE A 55 ALA A 59 1 O PHE A 57 N TRP A 11 SHEET 4 AA2 5 PHE A 254 ILE A 262 -1 O GLY A 261 N ILE A 56 SHEET 5 AA2 5 GLU A 324 ILE A 325 1 O GLU A 324 N VAL A 255 SHEET 1 AA3 2 ARG A 94 TYR A 95 0 SHEET 2 AA3 2 LYS A 98 LEU A 99 -1 O LYS A 98 N TYR A 95 SHEET 1 AA4 4 SER A 141 LEU A 143 0 SHEET 2 AA4 4 THR A 218 ASN A 223 1 O ALA A 219 N SER A 141 SHEET 3 AA4 4 SER A 110 ASN A 114 -1 N ASN A 114 O ALA A 219 SHEET 4 AA4 4 TYR A 238 THR A 241 -1 O THR A 241 N LEU A 111 SHEET 1 AA5 2 TYR A 163 GLU A 168 0 SHEET 2 AA5 2 LYS A 171 GLY A 178 -1 O LYS A 171 N GLU A 168 SHEET 1 AA6 2 THR A 245 PHE A 246 0 SHEET 2 AA6 2 GLN A 249 PRO A 250 -1 O GLN A 249 N PHE A 246 CISPEP 1 THR A 417 LEU A 418 0 11.31 CRYST1 160.476 71.396 47.538 90.00 104.91 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006231 0.000000 0.001660 0.00000 SCALE2 0.000000 0.014006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021769 0.00000