HEADER PROTEIN BINDING 05-OCT-15 5AZF TITLE CRYSTAL STRUCTURE OF LGG-1 COMPLEXED WITH A WEEL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LGG-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-116; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE FROM AUTOPHAGY-RELATED PROTEIN 19; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: ATG19 AIM; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: LGG-1, C32D5.9; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932 KEYWDS AUTOPHAGY, UBIQUITIN-LIKE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.WATANABE,N.N.NODA REVDAT 3 08-NOV-23 5AZF 1 LINK REVDAT 2 01-JAN-20 5AZF 1 JRNL REMARK REVDAT 1 30-DEC-15 5AZF 0 JRNL AUTH F.WU,Y.WATANABE,X.Y.GUO,X.QI,P.WANG,H.Y.ZHAO,Z.WANG, JRNL AUTH 2 Y.FUJIOKA,H.ZHANG,J.Q.REN,T.C.FANG,Y.X.SHEN,W.FENG,J.J.HU, JRNL AUTH 3 N.N.NODA,H.ZHANG JRNL TITL STRUCTURAL BASIS OF THE DIFFERENTIAL FUNCTION OF THE TWO C. JRNL TITL 2 ELEGANS ATG8 HOMOLOGS, LGG-1 AND LGG-2, IN AUTOPHAGY. JRNL REF MOL.CELL V. 60 914 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 26687600 JRNL DOI 10.1016/J.MOLCEL.2015.11.019 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 98719.310 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 50395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5071 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7067 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 778 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 411 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.75000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : -3.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.350 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.020 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.350 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.350 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 45.26 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR/PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR/DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR/WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR/ION.PARAM REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR/CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR/PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR/DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR/WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR/ION.TOP REMARK 3 TOPOLOGY FILE 5 : CNS_TOPPAR/CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 5AZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1300000258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51705 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1EO6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M SODIUM ACETATE, 50 MM HEPES, 25 REMARK 280 MM CADMIUM SULFATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.64000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.07300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.64000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.07300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 2 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 303 O HOH A 392 2.19 REMARK 500 O HOH B 314 O HOH B 336 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 38 -2.66 73.19 REMARK 500 LYS B 38 -0.61 70.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A -2 N REMARK 620 2 GLY A -2 O 68.9 REMARK 620 3 HOH A 337 O 77.6 129.5 REMARK 620 4 HOH A 388 O 110.1 71.7 157.9 REMARK 620 5 HIS B 0 NE2 123.9 82.0 86.9 104.2 REMARK 620 6 GLY B 116 O 138.2 150.4 76.8 84.6 87.0 REMARK 620 7 GLY B 116 OXT 91.5 134.7 80.9 78.2 139.0 52.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 0 NE2 REMARK 620 2 GLY A 116 O 131.9 REMARK 620 3 GLY B -2 N 126.2 94.7 REMARK 620 4 GLY B -2 O 82.3 141.0 70.2 REMARK 620 5 HOH B 396 O 98.5 80.8 116.6 75.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 42 NE2 REMARK 620 2 ASP A 97 OD2 23.1 REMARK 620 3 HOH A 347 O 92.0 114.5 REMARK 620 4 HOH A 426 O 99.3 77.9 165.3 REMARK 620 5 HOH A 428 O 137.1 127.8 88.6 89.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 98 NE2 REMARK 620 2 HOH A 338 O 90.1 REMARK 620 3 HOH A 432 O 103.2 86.3 REMARK 620 4 HOH A 439 O 90.7 81.3 161.4 REMARK 620 5 HOH A 451 O 98.8 161.3 107.3 82.2 REMARK 620 6 HOH A 490 O 175.3 85.7 78.5 86.7 84.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 NE2 REMARK 620 2 HOH A 445 O 89.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 NE2 REMARK 620 2 HOH A 374 O 90.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 27 OD1 REMARK 620 2 ASP B 27 OD2 52.5 REMARK 620 3 HOH B 410 O 110.9 77.0 REMARK 620 4 HOH B 437 O 87.4 129.0 93.5 REMARK 620 5 TRP C 1 N 51.4 103.1 122.2 41.4 REMARK 620 6 TRP C 1 O 50.9 102.7 122.2 41.8 0.5 REMARK 620 7 HOH C 109 O 138.8 159.9 82.9 52.2 88.0 88.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 42 NE2 REMARK 620 2 ASP B 97 OD1 23.5 REMARK 620 3 ASP B 97 OD2 25.0 2.4 REMARK 620 4 HOH B 346 O 90.4 113.4 114.4 REMARK 620 5 HOH B 429 O 98.5 76.2 75.4 168.9 REMARK 620 6 HOH B 441 O 133.8 124.5 122.1 91.8 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 98 NE2 REMARK 620 2 HOH B 319 O 89.2 REMARK 620 3 HOH B 436 O 98.2 88.2 REMARK 620 4 HOH B 452 O 97.0 86.0 163.7 REMARK 620 5 HOH B 455 O 105.9 152.7 111.4 69.9 REMARK 620 6 HOH B 482 O 169.4 80.8 85.1 79.0 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 207 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 99 NE2 REMARK 620 2 HOH B 369 O 94.3 REMARK 620 3 HOH B 412 O 70.9 161.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD D 101 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP D 1 N REMARK 620 2 TRP D 1 O 69.9 REMARK 620 3 HOH D 201 O 117.8 54.9 REMARK 620 4 HOH D 205 O 81.4 68.5 101.1 REMARK 620 5 HOH D 209 O 95.7 107.2 77.1 175.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AZG RELATED DB: PDB REMARK 900 RELATED ID: 5AZH RELATED DB: PDB DBREF 5AZF A 1 116 UNP Q09490 LGG1_CAEEL 1 116 DBREF 5AZF B 1 116 UNP Q09490 LGG1_CAEEL 1 116 DBREF 5AZF C 1 4 UNP P35193 ATG19_YEAST 412 415 DBREF 5AZF D 1 4 UNP P35193 ATG19_YEAST 412 415 SEQADV 5AZF GLY A -2 UNP Q09490 EXPRESSION TAG SEQADV 5AZF PRO A -1 UNP Q09490 EXPRESSION TAG SEQADV 5AZF HIS A 0 UNP Q09490 EXPRESSION TAG SEQADV 5AZF GLY B -2 UNP Q09490 EXPRESSION TAG SEQADV 5AZF PRO B -1 UNP Q09490 EXPRESSION TAG SEQADV 5AZF HIS B 0 UNP Q09490 EXPRESSION TAG SEQRES 1 A 119 GLY PRO HIS MET LYS TRP ALA TYR LYS GLU GLU ASN ASN SEQRES 2 A 119 PHE GLU LYS ARG ARG ALA GLU GLY ASP LYS ILE ARG ARG SEQRES 3 A 119 LYS TYR PRO ASP ARG ILE PRO VAL ILE VAL GLU LYS ALA SEQRES 4 A 119 PRO LYS SER LYS LEU HIS ASP LEU ASP LYS LYS LYS TYR SEQRES 5 A 119 LEU VAL PRO SER ASP LEU THR VAL GLY GLN PHE TYR PHE SEQRES 6 A 119 LEU ILE ARG LYS ARG ILE GLN LEU ARG PRO GLU ASP ALA SEQRES 7 A 119 LEU PHE PHE PHE VAL ASN ASN VAL ILE PRO GLN THR MET SEQRES 8 A 119 THR THR MET GLY GLN LEU TYR GLN ASP HIS HIS GLU GLU SEQRES 9 A 119 ASP LEU PHE LEU TYR ILE ALA TYR SER ASP GLU SER VAL SEQRES 10 A 119 TYR GLY SEQRES 1 B 119 GLY PRO HIS MET LYS TRP ALA TYR LYS GLU GLU ASN ASN SEQRES 2 B 119 PHE GLU LYS ARG ARG ALA GLU GLY ASP LYS ILE ARG ARG SEQRES 3 B 119 LYS TYR PRO ASP ARG ILE PRO VAL ILE VAL GLU LYS ALA SEQRES 4 B 119 PRO LYS SER LYS LEU HIS ASP LEU ASP LYS LYS LYS TYR SEQRES 5 B 119 LEU VAL PRO SER ASP LEU THR VAL GLY GLN PHE TYR PHE SEQRES 6 B 119 LEU ILE ARG LYS ARG ILE GLN LEU ARG PRO GLU ASP ALA SEQRES 7 B 119 LEU PHE PHE PHE VAL ASN ASN VAL ILE PRO GLN THR MET SEQRES 8 B 119 THR THR MET GLY GLN LEU TYR GLN ASP HIS HIS GLU GLU SEQRES 9 B 119 ASP LEU PHE LEU TYR ILE ALA TYR SER ASP GLU SER VAL SEQRES 10 B 119 TYR GLY SEQRES 1 C 4 TRP GLU GLU LEU SEQRES 1 D 4 TRP GLU GLU LEU HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET CD A 205 1 HET CD B 201 1 HET CD B 202 1 HET CD B 203 1 HET CD B 204 1 HET CD B 205 1 HET CD B 206 1 HET CD B 207 1 HET SO4 B 208 5 HET CD D 101 1 HETNAM CD CADMIUM ION HETNAM SO4 SULFATE ION FORMUL 5 CD 13(CD 2+) FORMUL 17 SO4 O4 S 2- FORMUL 19 HOH *411(H2 O) HELIX 1 AA1 TRP A 3 ASN A 9 1 7 HELIX 2 AA2 ASN A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 ILE A 68 1 13 HELIX 4 AA4 THR A 90 HIS A 99 1 10 HELIX 5 AA5 TRP B 3 ASN B 9 1 7 HELIX 6 AA6 ASN B 10 TYR B 25 1 16 HELIX 7 AA7 THR B 56 ILE B 68 1 13 HELIX 8 AA8 THR B 90 HIS B 99 1 10 SHEET 1 AA1 5 PHE A 77 PHE A 79 0 SHEET 2 AA1 5 LEU A 105 SER A 110 -1 O SER A 110 N PHE A 77 SHEET 3 AA1 5 ILE A 29 LYS A 35 1 N ILE A 32 O ILE A 107 SHEET 4 AA1 5 LYS A 48 VAL A 51 -1 O VAL A 51 N ILE A 29 SHEET 5 AA1 5 GLU C 2 GLU C 3 1 O GLU C 2 N LEU A 50 SHEET 1 AA2 5 PHE B 77 PHE B 79 0 SHEET 2 AA2 5 LEU B 105 SER B 110 -1 O SER B 110 N PHE B 77 SHEET 3 AA2 5 ARG B 28 LYS B 35 1 N ILE B 32 O ILE B 107 SHEET 4 AA2 5 LYS B 48 PRO B 52 -1 O TYR B 49 N VAL B 31 SHEET 5 AA2 5 GLU D 2 GLU D 3 1 O GLU D 2 N LEU B 50 LINK N GLY A -2 CD CD B 204 1555 1555 2.23 LINK O GLY A -2 CD CD B 204 1555 1555 2.60 LINK NE2 HIS A 0 CD CD A 204 1555 1555 2.18 LINK NE2 HIS A 42 CD CD A 201 1555 1555 2.17 LINK OD2 ASP A 97 CD CD A 201 1555 1554 2.29 LINK NE2 HIS A 98 CD CD A 202 1555 1555 2.36 LINK NE2 HIS A 99 CD CD A 203 1555 1555 2.22 LINK NE2 HIS A 99 CD CD A 205 1555 1555 2.62 LINK O GLY A 116 CD CD A 204 1555 1555 2.29 LINK CD CD A 201 O HOH A 347 1555 1556 2.36 LINK CD CD A 201 O HOH A 426 1555 1556 2.27 LINK CD CD A 201 O HOH A 428 1555 1556 2.29 LINK CD CD A 202 O HOH A 338 1555 1555 2.29 LINK CD CD A 202 O HOH A 432 1555 1555 2.53 LINK CD CD A 202 O HOH A 439 1555 1555 2.30 LINK CD CD A 202 O HOH A 451 1555 1555 2.27 LINK CD CD A 202 O HOH A 490 1555 1555 2.38 LINK CD CD A 203 O HOH A 445 1555 1555 2.64 LINK CD CD A 204 N GLY B -2 1555 1555 2.27 LINK CD CD A 204 O GLY B -2 1555 1555 2.53 LINK CD CD A 204 O HOH B 396 1555 1555 2.20 LINK CD CD A 205 O HOH A 374 1555 1555 2.41 LINK O HOH A 337 CD CD B 204 1555 1555 2.65 LINK O HOH A 388 CD CD B 204 1555 1555 2.22 LINK NE2 HIS B 0 CD CD B 204 1555 1555 2.22 LINK OE2 GLU B 17 CD CD B 206 1555 1555 2.30 LINK OD1 ASP B 27 CD CD B 205 1555 1555 2.31 LINK OD2 ASP B 27 CD CD B 205 1555 1555 2.62 LINK NE2 HIS B 42 CD CD B 201 1555 1555 2.19 LINK OD1 ASP B 97 CD CD B 201 1555 1556 2.70 LINK OD2 ASP B 97 CD CD B 201 1555 1556 2.28 LINK NE2 HIS B 98 CD CD B 202 1555 1555 2.34 LINK NE2 HIS B 99 CD CD B 203 1555 1555 2.36 LINK NE2 HIS B 99 CD CD B 207 1555 1555 2.53 LINK O GLY B 116 CD CD B 204 1555 1555 2.62 LINK OXT GLY B 116 CD CD B 204 1555 1555 2.34 LINK CD CD B 201 O HOH B 346 1555 1554 2.34 LINK CD CD B 201 O HOH B 429 1555 1554 2.23 LINK CD CD B 201 O HOH B 441 1555 1554 2.43 LINK CD CD B 202 O HOH B 319 1555 1555 2.45 LINK CD CD B 202 O HOH B 436 1555 1555 2.47 LINK CD CD B 202 O HOH B 452 1555 1555 2.51 LINK CD CD B 202 O HOH B 455 1555 1555 2.27 LINK CD CD B 202 O HOH B 482 1555 1555 2.41 LINK CD CD B 205 O HOH B 410 1555 1555 2.14 LINK CD CD B 205 O HOH B 437 1555 1555 2.37 LINK CD CD B 205 N TRP C 1 4555 1555 2.34 LINK CD CD B 205 O TRP C 1 4555 1555 2.31 LINK CD CD B 205 O HOH C 109 1555 4455 2.70 LINK CD CD B 207 O HOH B 369 1555 1555 2.18 LINK CD CD B 207 O HOH B 412 1555 1555 2.62 LINK N TRP D 1 CD CD D 101 1555 1555 2.28 LINK O TRP D 1 CD CD D 101 1555 1555 2.64 LINK CD CD D 101 O HOH D 201 1555 1555 1.91 LINK CD CD D 101 O HOH D 205 1555 1555 2.23 LINK CD CD D 101 O HOH D 209 1555 1555 2.42 SITE 1 AC1 6 HIS A 42 ASP A 97 HOH A 347 HOH A 426 SITE 2 AC1 6 HOH A 428 HOH A 435 SITE 1 AC2 6 HIS A 98 HOH A 338 HOH A 432 HOH A 439 SITE 2 AC2 6 HOH A 451 HOH A 490 SITE 1 AC3 6 HIS A 99 CD A 205 HOH A 374 HOH A 445 SITE 2 AC3 6 HOH A 461 HOH A 462 SITE 1 AC4 5 HIS A 0 GLY A 116 GLY B -2 HOH B 394 SITE 2 AC4 5 HOH B 396 SITE 1 AC5 4 HIS A 99 CD A 203 HOH A 374 HOH A 434 SITE 1 AC6 6 HIS B 42 ASP B 97 HOH B 346 HOH B 429 SITE 2 AC6 6 HOH B 441 HOH B 445 SITE 1 AC7 6 HIS B 98 HOH B 319 HOH B 436 HOH B 452 SITE 2 AC7 6 HOH B 455 HOH B 482 SITE 1 AC8 5 HIS B 99 CD B 207 HOH B 369 HOH B 458 SITE 2 AC8 5 HOH B 467 SITE 1 AC9 5 GLY A -2 HOH A 337 HOH A 388 HIS B 0 SITE 2 AC9 5 GLY B 116 SITE 1 AD1 5 ASP B 27 HOH B 410 HOH B 437 TRP C 1 SITE 2 AD1 5 HOH C 109 SITE 1 AD2 1 GLU B 17 SITE 1 AD3 4 HIS B 99 CD B 203 HOH B 369 HOH B 412 SITE 1 AD4 5 LYS B 46 LYS B 47 LYS B 48 HOH B 311 SITE 2 AD4 5 HOH B 326 SITE 1 AD5 4 TRP D 1 HOH D 201 HOH D 205 HOH D 209 CRYST1 95.280 112.146 35.859 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010495 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027887 0.00000