HEADER PROTEIN BINDING 05-OCT-15 5AZG TITLE CRYSTAL STRUCTURE OF LGG-1 COMPLEXED WITH A UNC-51 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LGG-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-116; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SERINE/THREONINE-PROTEIN KINASE UNC-51; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: UNC-51 AIM; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: LGG-1, C32D5.9; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 13 ORGANISM_TAXID: 6239 KEYWDS AUTOPHAGY, UBIQUITIN-LIKE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.WATANABE,Y.FUJIOKA,N.N.NODA REVDAT 3 08-NOV-23 5AZG 1 LINK REVDAT 2 01-JAN-20 5AZG 1 JRNL REMARK REVDAT 1 30-DEC-15 5AZG 0 JRNL AUTH F.WU,Y.WATANABE,X.Y.GUO,X.QI,P.WANG,H.Y.ZHAO,Z.WANG, JRNL AUTH 2 Y.FUJIOKA,H.ZHANG,J.Q.REN,T.C.FANG,Y.X.SHEN,W.FENG,J.J.HU, JRNL AUTH 3 N.N.NODA,H.ZHANG JRNL TITL STRUCTURAL BASIS OF THE DIFFERENTIAL FUNCTION OF THE TWO C. JRNL TITL 2 ELEGANS ATG8 HOMOLOGS, LGG-1 AND LGG-2, IN AUTOPHAGY. JRNL REF MOL.CELL V. 60 914 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 26687600 JRNL DOI 10.1016/J.MOLCEL.2015.11.019 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1768 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2117 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.646 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2173 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2070 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2928 ; 1.190 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4770 ; 0.884 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 5.740 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;32.939 ;23.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;13.935 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.288 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2407 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 529 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 992 ; 1.305 ; 3.142 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 991 ; 1.305 ; 3.141 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1233 ; 2.074 ; 4.699 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1234 ; 2.073 ; 4.700 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1181 ; 1.608 ; 3.412 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1181 ; 1.608 ; 3.413 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1695 ; 2.716 ; 5.024 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2443 ; 5.501 ;25.532 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2390 ; 5.191 ;25.079 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 12.428 16.537 13.041 REMARK 3 T TENSOR REMARK 3 T11: 0.2005 T22: 0.1752 REMARK 3 T33: 0.0306 T12: 0.0245 REMARK 3 T13: 0.0245 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 2.1830 L22: 2.6731 REMARK 3 L33: 2.2825 L12: 0.4830 REMARK 3 L13: 0.4234 L23: 0.2262 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.5787 S13: 0.2148 REMARK 3 S21: 0.6431 S22: -0.0542 S23: 0.1802 REMARK 3 S31: -0.2033 S32: -0.0031 S33: 0.0675 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5AZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1300000257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26489 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 55.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.87800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5AZF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, CADMIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.84200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.05800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.84200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.05800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.75000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.84200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.05800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.75000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.84200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.05800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR C 352 REMARK 465 GLN C 353 REMARK 465 GLU C 354 REMARK 465 SER C 355 REMARK 465 THR C 356 REMARK 465 TYR D 352 REMARK 465 GLN D 353 REMARK 465 GLU D 354 REMARK 465 SER D 355 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD CD A 203 O HOH A 301 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 38 -13.26 77.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A -2 N REMARK 620 2 GLY A -2 O 71.5 REMARK 620 3 HIS B 0 NE2 35.5 68.3 REMARK 620 4 GLY B 116 O 37.8 66.5 2.9 REMARK 620 5 GLY B 116 OXT 38.7 67.5 3.4 1.4 REMARK 620 6 HOH B 313 O 38.2 68.9 2.8 2.4 1.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 0 NE2 REMARK 620 2 GLY A 116 O 145.3 REMARK 620 3 GLY A 116 OXT 95.7 50.0 REMARK 620 4 GLY B -2 N 52.5 116.6 81.9 REMARK 620 5 GLY B -2 O 53.6 114.3 79.4 2.6 REMARK 620 6 HOH B 313 O 82.0 90.6 72.4 29.7 28.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 206 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 27 OD1 REMARK 620 2 ASP A 27 OD2 55.9 REMARK 620 3 ASP B 54 OD1 136.1 84.1 REMARK 620 4 ASP B 54 OD2 168.1 133.0 55.6 REMARK 620 5 HOH B 327 O 93.9 85.9 101.1 80.1 REMARK 620 6 HOH B 335 O 87.0 104.1 86.0 96.8 168.4 REMARK 620 7 HOH B 344 O 86.0 137.5 137.3 82.8 78.1 90.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 45 OD1 REMARK 620 2 ASP A 45 OD2 52.3 REMARK 620 3 HOH B 320 O 78.3 130.5 REMARK 620 4 HOH B 351 O 162.0 136.7 90.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 208 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD1 REMARK 620 2 ASP A 54 OD2 52.5 REMARK 620 3 ASP B 27 OD2 158.0 106.5 REMARK 620 4 HOH B 331 O 81.8 94.2 108.9 REMARK 620 5 HOH B 343 O 109.0 157.6 89.5 95.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD1 REMARK 620 2 ASP A 97 OD2 51.6 REMARK 620 3 HOH A 328 O 91.1 91.6 REMARK 620 4 ASP B 19 OD2 123.4 123.4 36.1 REMARK 620 5 HOH B 333 O 96.6 87.4 169.3 139.0 REMARK 620 6 HOH B 345 O 160.2 109.6 82.7 58.3 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 98 NE2 REMARK 620 2 HOH A 310 O 96.7 REMARK 620 3 HOH A 336 O 90.3 92.7 REMARK 620 4 HOH A 338 O 103.3 159.9 85.5 REMARK 620 5 HOH A 341 O 167.4 72.5 83.8 87.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 NE2 REMARK 620 2 HOH A 311 O 123.9 REMARK 620 3 HOH A 335 O 123.0 3.5 REMARK 620 4 HIS B 99 NE2 122.5 5.7 2.2 REMARK 620 5 HOH B 340 O 127.5 5.2 4.5 5.3 REMARK 620 6 HOH B 347 O 125.9 7.5 4.9 3.9 3.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 207 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 303 O REMARK 620 2 HOH B 324 O 101.6 REMARK 620 3 HOH B 337 O 60.9 72.8 REMARK 620 4 HOH B 346 O 163.4 92.7 116.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 206 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 302 O REMARK 620 2 HOH A 340 O 83.2 REMARK 620 3 ASP B 45 OD1 69.4 138.8 REMARK 620 4 HOH B 321 O 94.5 81.3 71.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 98 NE2 REMARK 620 2 HOH B 302 O 69.5 REMARK 620 3 HOH B 311 O 103.3 169.1 REMARK 620 4 HOH B 338 O 83.9 94.6 92.7 REMARK 620 5 HOH B 349 O 100.2 90.0 83.1 174.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AZF RELATED DB: PDB REMARK 900 5AZF CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT PEPTIDE. REMARK 900 RELATED ID: 5AZH RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 TYR WAS ADDED TO THE N-TERMINUS OF UNC-51 LIR FOR QUANTIFICATION. DBREF 5AZG A 1 116 UNP Q09490 LGG1_CAEEL 1 116 DBREF 5AZG B 1 116 UNP Q09490 LGG1_CAEEL 1 116 DBREF 5AZG C 353 361 UNP Q23023 UNC51_CAEEL 353 361 DBREF 5AZG D 353 361 UNP Q23023 UNC51_CAEEL 353 361 SEQADV 5AZG GLY A -2 UNP Q09490 EXPRESSION TAG SEQADV 5AZG PRO A -1 UNP Q09490 EXPRESSION TAG SEQADV 5AZG HIS A 0 UNP Q09490 EXPRESSION TAG SEQADV 5AZG GLY B -2 UNP Q09490 EXPRESSION TAG SEQADV 5AZG PRO B -1 UNP Q09490 EXPRESSION TAG SEQADV 5AZG HIS B 0 UNP Q09490 EXPRESSION TAG SEQADV 5AZG TYR C 352 UNP Q23023 SEE SEQUENCE DETAILS SEQADV 5AZG TYR D 352 UNP Q23023 SEE SEQUENCE DETAILS SEQRES 1 A 119 GLY PRO HIS MET LYS TRP ALA TYR LYS GLU GLU ASN ASN SEQRES 2 A 119 PHE GLU LYS ARG ARG ALA GLU GLY ASP LYS ILE ARG ARG SEQRES 3 A 119 LYS TYR PRO ASP ARG ILE PRO VAL ILE VAL GLU LYS ALA SEQRES 4 A 119 PRO LYS SER LYS LEU HIS ASP LEU ASP LYS LYS LYS TYR SEQRES 5 A 119 LEU VAL PRO SER ASP LEU THR VAL GLY GLN PHE TYR PHE SEQRES 6 A 119 LEU ILE ARG LYS ARG ILE GLN LEU ARG PRO GLU ASP ALA SEQRES 7 A 119 LEU PHE PHE PHE VAL ASN ASN VAL ILE PRO GLN THR MET SEQRES 8 A 119 THR THR MET GLY GLN LEU TYR GLN ASP HIS HIS GLU GLU SEQRES 9 A 119 ASP LEU PHE LEU TYR ILE ALA TYR SER ASP GLU SER VAL SEQRES 10 A 119 TYR GLY SEQRES 1 B 119 GLY PRO HIS MET LYS TRP ALA TYR LYS GLU GLU ASN ASN SEQRES 2 B 119 PHE GLU LYS ARG ARG ALA GLU GLY ASP LYS ILE ARG ARG SEQRES 3 B 119 LYS TYR PRO ASP ARG ILE PRO VAL ILE VAL GLU LYS ALA SEQRES 4 B 119 PRO LYS SER LYS LEU HIS ASP LEU ASP LYS LYS LYS TYR SEQRES 5 B 119 LEU VAL PRO SER ASP LEU THR VAL GLY GLN PHE TYR PHE SEQRES 6 B 119 LEU ILE ARG LYS ARG ILE GLN LEU ARG PRO GLU ASP ALA SEQRES 7 B 119 LEU PHE PHE PHE VAL ASN ASN VAL ILE PRO GLN THR MET SEQRES 8 B 119 THR THR MET GLY GLN LEU TYR GLN ASP HIS HIS GLU GLU SEQRES 9 B 119 ASP LEU PHE LEU TYR ILE ALA TYR SER ASP GLU SER VAL SEQRES 10 B 119 TYR GLY SEQRES 1 C 10 TYR GLN GLU SER THR ASP PHE THR PHE LEU SEQRES 1 D 10 TYR GLN GLU SER THR ASP PHE THR PHE LEU HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET CD A 205 1 HET CD A 206 1 HET CD A 207 1 HET CD A 208 1 HET CD B 201 1 HET CD B 202 1 HET CD B 203 1 HET CD B 204 1 HET CD B 205 1 HET CD B 206 1 HETNAM CD CADMIUM ION FORMUL 5 CD 14(CD 2+) FORMUL 19 HOH *107(H2 O) HELIX 1 AA1 TRP A 3 ASN A 9 1 7 HELIX 2 AA2 ASN A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 ILE A 68 1 13 HELIX 4 AA4 THR A 90 HIS A 99 1 10 HELIX 5 AA5 TRP B 3 ASN B 9 1 7 HELIX 6 AA6 ASN B 10 TYR B 25 1 16 HELIX 7 AA7 THR B 56 ILE B 68 1 13 HELIX 8 AA8 THR B 90 HIS B 99 1 10 SHEET 1 AA1 5 PHE A 77 PHE A 79 0 SHEET 2 AA1 5 LEU A 105 SER A 110 -1 O SER A 110 N PHE A 77 SHEET 3 AA1 5 ARG A 28 LYS A 35 1 N ILE A 32 O ILE A 107 SHEET 4 AA1 5 LYS A 48 PRO A 52 -1 O VAL A 51 N ILE A 29 SHEET 5 AA1 5 THR C 359 PHE C 360 1 O THR C 359 N LEU A 50 SHEET 1 AA2 5 PHE B 77 VAL B 80 0 SHEET 2 AA2 5 LEU B 105 SER B 110 -1 O SER B 110 N PHE B 77 SHEET 3 AA2 5 ARG B 28 LYS B 35 1 N ILE B 32 O ILE B 107 SHEET 4 AA2 5 LYS B 48 PRO B 52 -1 O TYR B 49 N VAL B 31 SHEET 5 AA2 5 THR D 359 PHE D 360 1 O THR D 359 N LYS B 48 LINK N GLY A -2 CD CD B 201 1555 6554 2.46 LINK O GLY A -2 CD CD B 201 1555 6554 2.37 LINK NE2 HIS A 0 CD CD A 201 1555 1555 2.30 LINK OE2 GLU A 17 CD CD A 202 1555 1555 2.49 LINK OD1 ASP A 27 CD CD A 206 1555 1555 2.37 LINK OD2 ASP A 27 CD CD A 206 1555 1555 2.28 LINK OD1 ASP A 45 CD CD A 203 1555 1555 2.41 LINK OD2 ASP A 45 CD CD A 203 1555 1555 2.58 LINK OD1 ASP A 54 CD CD A 208 1555 1555 2.58 LINK OD2 ASP A 54 CD CD A 208 1555 1555 2.37 LINK OD1 ASP A 97 CD CD A 204 1555 1555 2.69 LINK OD2 ASP A 97 CD CD A 204 1555 1555 2.30 LINK NE2 HIS A 98 CD CD A 205 1555 1555 2.41 LINK NE2 HIS A 99 CD CD B 202 1555 3655 2.35 LINK O GLY A 116 CD CD A 201 1555 1555 2.48 LINK OXT GLY A 116 CD CD A 201 1555 1555 2.51 LINK CD CD A 201 N GLY B -2 6555 1555 2.53 LINK CD CD A 201 O GLY B -2 6555 1555 2.36 LINK CD CD A 201 O HOH B 313 1555 6554 2.61 LINK CD CD A 203 O HOH B 320 1555 3555 2.36 LINK CD CD A 203 O HOH B 351 1555 3555 2.39 LINK CD CD A 204 O HOH A 328 1555 1555 2.22 LINK CD CD A 204 OD2 ASP B 19 3655 1555 2.33 LINK CD CD A 204 O HOH B 333 1555 3655 2.01 LINK CD CD A 204 O HOH B 345 1555 3655 2.33 LINK CD CD A 205 O HOH A 310 1555 1555 2.45 LINK CD CD A 205 O HOH A 336 1555 1555 2.12 LINK CD CD A 205 O HOH A 338 1555 1555 2.23 LINK CD CD A 205 O HOH A 341 1555 1555 2.40 LINK CD CD A 206 OD1 ASP B 54 1555 1555 2.34 LINK CD CD A 206 OD2 ASP B 54 1555 1555 2.36 LINK CD CD A 206 O HOH B 327 1555 1555 2.16 LINK CD CD A 206 O HOH B 335 1555 1555 2.01 LINK CD CD A 206 O HOH B 344 1555 1555 2.44 LINK CD CD A 207 O HOH A 303 1555 1555 2.43 LINK CD CD A 207 O HOH B 324 1555 3655 2.53 LINK CD CD A 207 O HOH B 337 1555 1555 2.51 LINK CD CD A 207 O HOH B 346 1555 3655 2.69 LINK CD CD A 208 OD2 ASP B 27 1555 1555 2.07 LINK CD CD A 208 O HOH B 331 1555 1555 2.05 LINK CD CD A 208 O HOH B 343 1555 1555 2.41 LINK O HOH A 302 CD CD B 206 3555 1555 2.11 LINK O HOH A 311 CD CD B 202 3655 1555 2.30 LINK O HOH A 335 CD CD B 202 3655 1555 2.13 LINK O HOH A 340 CD CD B 206 3555 1555 2.31 LINK NE2 HIS B 0 CD CD B 201 1555 1555 2.24 LINK OE2 GLU B 17 CD CD B 203 1555 1555 2.53 LINK OD1 ASP B 45 CD CD B 206 1555 1555 2.57 LINK NE2 HIS B 98 CD CD B 205 1555 1555 2.52 LINK NE2 HIS B 99 CD CD B 202 1555 1555 2.35 LINK OD2 ASP B 111 CD CD B 204 1555 1555 2.25 LINK O GLY B 116 CD CD B 201 1555 1555 2.31 LINK OXT GLY B 116 CD CD B 201 1555 1555 2.52 LINK CD CD B 201 O HOH B 313 1555 1555 2.16 LINK CD CD B 202 O HOH B 340 1555 1555 2.22 LINK CD CD B 202 O HOH B 347 1555 1555 2.58 LINK CD CD B 205 O HOH B 302 1555 1555 2.09 LINK CD CD B 205 O HOH B 311 1555 1555 2.35 LINK CD CD B 205 O HOH B 338 1555 1555 2.00 LINK CD CD B 205 O HOH B 349 1555 1555 2.17 LINK CD CD B 206 O HOH B 321 1555 1555 2.27 SITE 1 AC1 4 HIS A 0 GLY A 116 GLY B -2 HOH B 313 SITE 1 AC2 1 GLU A 17 SITE 1 AC3 5 ASP A 45 HOH A 301 HIS B 42 HOH B 320 SITE 2 AC3 5 HOH B 351 SITE 1 AC4 5 ASP A 97 HOH A 328 ASP B 19 HOH B 333 SITE 2 AC4 5 HOH B 345 SITE 1 AC5 6 HIS A 98 HOH A 310 HOH A 336 HOH A 338 SITE 2 AC5 6 HOH A 339 HOH A 341 SITE 1 AC6 5 ASP A 27 ASP B 54 HOH B 327 HOH B 335 SITE 2 AC6 5 HOH B 344 SITE 1 AC7 4 HOH A 303 HOH B 324 HOH B 337 HOH B 346 SITE 1 AC8 4 ASP A 54 ASP B 27 HOH B 331 HOH B 343 SITE 1 AC9 4 GLY A -2 HIS B 0 GLY B 116 HOH B 313 SITE 1 AD1 6 HIS A 99 HOH A 311 HOH A 335 HIS B 99 SITE 2 AD1 6 HOH B 340 HOH B 347 SITE 1 AD2 2 GLU B 17 HOH D 406 SITE 1 AD3 1 ASP B 111 SITE 1 AD4 6 HIS B 98 HOH B 302 HOH B 311 HOH B 338 SITE 2 AD4 6 HOH B 349 HOH B 354 SITE 1 AD5 6 HIS A 42 GLN A 69 HOH A 302 HOH A 340 SITE 2 AD5 6 ASP B 45 HOH B 321 CRYST1 63.684 80.116 111.500 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015703 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008969 0.00000