HEADER VIRAL PROTEIN 05-NOV-15 5B0V TITLE CRYSTAL STRUCTURE OF MARBURG VIRUS VP40 DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN VP40; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MEMBRANE-ASSOCIATED PROTEIN VP40; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAKE VICTORIA MARBURGVIRUS (STRAIN MUSOKE-80); SOURCE 3 ORGANISM_COMMON: MARV; SOURCE 4 ORGANISM_TAXID: 33727; SOURCE 5 STRAIN: MUSOKE-80; SOURCE 6 GENE: VP40; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MARBURG VIRUS, VIRUS ASSEMBLY PROTEIN, IMMUNOSUPPRESSION, FILOVIRUS, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.ODA,Z.A.BORNHOLDT,D.M.ABELSON,E.O.SAPHIRE REVDAT 3 13-NOV-24 5B0V 1 JRNL REMARK REVDAT 2 09-MAR-16 5B0V 1 JRNL REVDAT 1 20-JAN-16 5B0V 0 JRNL AUTH S.ODA,T.NODA,K.J.WIJESINGHE,P.HALFMANN,Z.A.BORNHOLDT, JRNL AUTH 2 D.M.ABELSON,T.ARMBRUST,R.V.STAHELIN,Y.KAWAOKA,E.O.SAPHIRE JRNL TITL CRYSTAL STRUCTURE OF MARBURG VIRUS VP40 REVEALS A BROAD, JRNL TITL 2 BASIC PATCH FOR MATRIX ASSEMBLY AND A REQUIREMENT OF THE JRNL TITL 3 N-TERMINAL DOMAIN FOR IMMUNOSUPPRESSION JRNL REF J.VIROL. V. 90 1839 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 26656687 JRNL DOI 10.1128/JVI.01597-15 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 15475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 828 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1111 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4033 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.373 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.317 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.489 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4042 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3877 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5516 ; 1.546 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8867 ; 1.090 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 507 ; 6.579 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;37.721 ;24.277 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 575 ;14.759 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;23.713 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4619 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 944 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2046 ; 1.391 ; 2.319 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2045 ; 1.388 ; 2.317 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2544 ; 2.431 ; 3.459 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2545 ; 2.431 ; 3.461 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1995 ; 1.281 ; 2.370 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1996 ; 1.281 ; 2.371 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2971 ; 2.176 ; 3.499 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 16138 ; 5.721 ;21.307 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 16136 ; 5.721 ;21.309 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 38 301 B 38 301 13386 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3949 3.7253 34.7479 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.0253 REMARK 3 T33: 0.0406 T12: 0.0290 REMARK 3 T13: 0.0150 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.1491 L22: 2.7250 REMARK 3 L33: 1.2192 L12: -0.4790 REMARK 3 L13: 0.6896 L23: -0.5032 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: -0.0814 S13: -0.0113 REMARK 3 S21: 0.0241 S22: -0.0407 S23: 0.0003 REMARK 3 S31: -0.0716 S32: -0.1358 S33: 0.1038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 36 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3357 27.2745 1.9498 REMARK 3 T TENSOR REMARK 3 T11: 0.2420 T22: 0.0353 REMARK 3 T33: 0.0237 T12: 0.0119 REMARK 3 T13: 0.0392 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.6443 L22: 1.6471 REMARK 3 L33: 2.7477 L12: -0.0857 REMARK 3 L13: 0.7153 L23: -0.0570 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: 0.2205 S13: 0.0760 REMARK 3 S21: -0.3503 S22: 0.0039 S23: -0.0688 REMARK 3 S31: 0.0062 S32: 0.0280 S33: -0.0543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5B0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1300000279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979, 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25037 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.810 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.5% ETHANOL, 75MM NACL, 10MM CHAPS, REMARK 280 100MM TRIS-HCL, PH 7.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.90500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.65500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.82500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.90500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.65500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.82500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.90500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.65500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.82500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.90500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.65500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.82500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -13 REMARK 465 ALA A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 VAL A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 ASN A 6 REMARK 465 TYR A 7 REMARK 465 ASN A 8 REMARK 465 THR A 9 REMARK 465 TYR A 10 REMARK 465 MSE A 11 REMARK 465 GLN A 12 REMARK 465 TYR A 13 REMARK 465 LEU A 14 REMARK 465 ASN A 15 REMARK 465 PRO A 16 REMARK 465 PRO A 17 REMARK 465 PRO A 18 REMARK 465 TYR A 19 REMARK 465 ALA A 20 REMARK 465 ASP A 21 REMARK 465 HIS A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 ASN A 25 REMARK 465 GLN A 26 REMARK 465 LEU A 27 REMARK 465 ILE A 28 REMARK 465 PRO A 29 REMARK 465 ALA A 30 REMARK 465 ASP A 31 REMARK 465 GLN A 32 REMARK 465 LEU A 33 REMARK 465 SER A 34 REMARK 465 ASN A 35 REMARK 465 GLN A 36 REMARK 465 GLN A 37 REMARK 465 ALA A 71 REMARK 465 TYR A 72 REMARK 465 SER A 156 REMARK 465 THR A 157 REMARK 465 LYS A 264 REMARK 465 LYS A 265 REMARK 465 ARG A 266 REMARK 465 GLY A 267 REMARK 465 MSE B -13 REMARK 465 ALA B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 VAL B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 ASP B -1 REMARK 465 LYS B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 ASN B 6 REMARK 465 TYR B 7 REMARK 465 ASN B 8 REMARK 465 THR B 9 REMARK 465 TYR B 10 REMARK 465 MSE B 11 REMARK 465 GLN B 12 REMARK 465 TYR B 13 REMARK 465 LEU B 14 REMARK 465 ASN B 15 REMARK 465 PRO B 16 REMARK 465 PRO B 17 REMARK 465 PRO B 18 REMARK 465 TYR B 19 REMARK 465 ALA B 20 REMARK 465 ASP B 21 REMARK 465 HIS B 22 REMARK 465 GLY B 23 REMARK 465 ALA B 24 REMARK 465 ASN B 25 REMARK 465 GLN B 26 REMARK 465 LEU B 27 REMARK 465 ILE B 28 REMARK 465 PRO B 29 REMARK 465 ALA B 30 REMARK 465 ASP B 31 REMARK 465 GLN B 32 REMARK 465 LEU B 33 REMARK 465 SER B 34 REMARK 465 ASN B 35 REMARK 465 GLN B 216 REMARK 465 HIS B 217 REMARK 465 LYS B 218 REMARK 465 LYS B 259 REMARK 465 GLU B 260 REMARK 465 LYS B 264 REMARK 465 LYS B 265 REMARK 465 ARG B 266 REMARK 465 GLY B 267 REMARK 465 GLU B 268 REMARK 465 ASN B 269 REMARK 465 ALA B 302 REMARK 465 VAL B 303 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 73 CB CG OD1 ND2 REMARK 480 GLU A 74 CB CG CD OE1 OE2 REMARK 480 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 78 CE NZ REMARK 480 ASN A 158 CB CG OD1 ND2 REMARK 480 LYS A 173 CE NZ REMARK 480 LYS A 183 CG CD CE NZ REMARK 480 LYS A 211 CB CG CD CE NZ REMARK 480 GLN A 212 CG CD OE1 NE2 REMARK 480 LYS A 259 CG CD CE NZ REMARK 480 GLU A 260 CG CD OE1 OE2 REMARK 480 MSE A 263 CG SE CE REMARK 480 GLU A 268 CB CG CD OE1 OE2 REMARK 480 VAL A 303 CB CG1 CG2 REMARK 480 GLN B 36 CB CG CD OE1 NE2 REMARK 480 GLN B 37 CB CG CD OE1 NE2 REMARK 480 LYS B 185 CG CD CE NZ REMARK 480 LYS B 211 CG CD CE NZ REMARK 480 GLN B 212 CG CD OE1 NE2 REMARK 480 ARG B 215 CB CG CD NE CZ NH1 NH2 REMARK 480 ASN B 219 CG OD1 ND2 REMARK 480 ASN B 221 CB CG OD1 ND2 REMARK 480 ARG B 236 CD NE CZ NH1 NH2 REMARK 480 MSE B 263 CB CG SE CE REMARK 480 SER B 270 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 56 SE MSE A 263 1.60 REMARK 500 O ALA B 102 NH1 ARG B 125 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 148 3.29 -67.43 REMARK 500 VAL A 150 -46.64 -136.66 REMARK 500 SER A 301 88.02 -165.18 REMARK 500 ASN B 148 4.45 -67.25 REMARK 500 VAL B 150 -53.56 -139.46 REMARK 500 MSE B 262 -151.95 -130.62 REMARK 500 LEU B 300 75.65 -114.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 5B0V A 2 303 UNP P35260 VP40_MABVM 2 303 DBREF 5B0V B 2 303 UNP P35260 VP40_MABVM 2 303 SEQADV 5B0V MSE A -13 UNP P35260 INITIATING METHIONINE SEQADV 5B0V ALA A -12 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS A -11 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS A -10 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS A -9 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS A -8 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS A -7 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS A -6 UNP P35260 EXPRESSION TAG SEQADV 5B0V VAL A -5 UNP P35260 EXPRESSION TAG SEQADV 5B0V ASP A -4 UNP P35260 EXPRESSION TAG SEQADV 5B0V ASP A -3 UNP P35260 EXPRESSION TAG SEQADV 5B0V ASP A -2 UNP P35260 EXPRESSION TAG SEQADV 5B0V ASP A -1 UNP P35260 EXPRESSION TAG SEQADV 5B0V LYS A 0 UNP P35260 EXPRESSION TAG SEQADV 5B0V MSE A 1 UNP P35260 EXPRESSION TAG SEQADV 5B0V MSE B -13 UNP P35260 INITIATING METHIONINE SEQADV 5B0V ALA B -12 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS B -11 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS B -10 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS B -9 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS B -8 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS B -7 UNP P35260 EXPRESSION TAG SEQADV 5B0V HIS B -6 UNP P35260 EXPRESSION TAG SEQADV 5B0V VAL B -5 UNP P35260 EXPRESSION TAG SEQADV 5B0V ASP B -4 UNP P35260 EXPRESSION TAG SEQADV 5B0V ASP B -3 UNP P35260 EXPRESSION TAG SEQADV 5B0V ASP B -2 UNP P35260 EXPRESSION TAG SEQADV 5B0V ASP B -1 UNP P35260 EXPRESSION TAG SEQADV 5B0V LYS B 0 UNP P35260 EXPRESSION TAG SEQADV 5B0V MSE B 1 UNP P35260 EXPRESSION TAG SEQRES 1 A 317 MSE ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 317 LYS MSE ALA SER SER SER ASN TYR ASN THR TYR MSE GLN SEQRES 3 A 317 TYR LEU ASN PRO PRO PRO TYR ALA ASP HIS GLY ALA ASN SEQRES 4 A 317 GLN LEU ILE PRO ALA ASP GLN LEU SER ASN GLN GLN GLY SEQRES 5 A 317 ILE THR PRO ASN TYR VAL GLY ASP LEU ASN LEU ASP ASP SEQRES 6 A 317 GLN PHE LYS GLY ASN VAL CYS HIS ALA PHE THR LEU GLU SEQRES 7 A 317 ALA ILE ILE ASP ILE SER ALA TYR ASN GLU ARG THR VAL SEQRES 8 A 317 LYS GLY VAL PRO ALA TRP LEU PRO LEU GLY ILE MSE SER SEQRES 9 A 317 ASN PHE GLU TYR PRO LEU ALA HIS THR VAL ALA ALA LEU SEQRES 10 A 317 LEU THR GLY SER TYR THR ILE THR GLN PHE THR HIS ASN SEQRES 11 A 317 GLY GLN LYS PHE VAL ARG VAL ASN ARG LEU GLY THR GLY SEQRES 12 A 317 ILE PRO ALA HIS PRO LEU ARG MSE LEU ARG GLU GLY ASN SEQRES 13 A 317 GLN ALA PHE ILE GLN ASN MSE VAL ILE PRO ARG ASN PHE SEQRES 14 A 317 SER THR ASN GLN PHE THR TYR ASN LEU THR ASN LEU VAL SEQRES 15 A 317 LEU SER VAL GLN LYS LEU PRO ASP ASP ALA TRP ARG PRO SEQRES 16 A 317 SER LYS ASP LYS LEU ILE GLY ASN THR MSE HIS PRO ALA SEQRES 17 A 317 VAL SER ILE HIS PRO ASN LEU PRO PRO ILE VAL LEU PRO SEQRES 18 A 317 THR VAL LYS LYS GLN ALA TYR ARG GLN HIS LYS ASN PRO SEQRES 19 A 317 ASN ASN GLY PRO LEU LEU ALA ILE SER GLY ILE LEU HIS SEQRES 20 A 317 GLN LEU ARG VAL GLU LYS VAL PRO GLU LYS THR SER LEU SEQRES 21 A 317 PHE ARG ILE SER LEU PRO ALA ASP MSE PHE SER VAL LYS SEQRES 22 A 317 GLU GLY MSE MSE LYS LYS ARG GLY GLU ASN SER PRO VAL SEQRES 23 A 317 VAL TYR PHE GLN ALA PRO GLU ASN PHE PRO LEU ASN GLY SEQRES 24 A 317 PHE ASN ASN ARG GLN VAL VAL LEU ALA TYR ALA ASN PRO SEQRES 25 A 317 THR LEU SER ALA VAL SEQRES 1 B 317 MSE ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 317 LYS MSE ALA SER SER SER ASN TYR ASN THR TYR MSE GLN SEQRES 3 B 317 TYR LEU ASN PRO PRO PRO TYR ALA ASP HIS GLY ALA ASN SEQRES 4 B 317 GLN LEU ILE PRO ALA ASP GLN LEU SER ASN GLN GLN GLY SEQRES 5 B 317 ILE THR PRO ASN TYR VAL GLY ASP LEU ASN LEU ASP ASP SEQRES 6 B 317 GLN PHE LYS GLY ASN VAL CYS HIS ALA PHE THR LEU GLU SEQRES 7 B 317 ALA ILE ILE ASP ILE SER ALA TYR ASN GLU ARG THR VAL SEQRES 8 B 317 LYS GLY VAL PRO ALA TRP LEU PRO LEU GLY ILE MSE SER SEQRES 9 B 317 ASN PHE GLU TYR PRO LEU ALA HIS THR VAL ALA ALA LEU SEQRES 10 B 317 LEU THR GLY SER TYR THR ILE THR GLN PHE THR HIS ASN SEQRES 11 B 317 GLY GLN LYS PHE VAL ARG VAL ASN ARG LEU GLY THR GLY SEQRES 12 B 317 ILE PRO ALA HIS PRO LEU ARG MSE LEU ARG GLU GLY ASN SEQRES 13 B 317 GLN ALA PHE ILE GLN ASN MSE VAL ILE PRO ARG ASN PHE SEQRES 14 B 317 SER THR ASN GLN PHE THR TYR ASN LEU THR ASN LEU VAL SEQRES 15 B 317 LEU SER VAL GLN LYS LEU PRO ASP ASP ALA TRP ARG PRO SEQRES 16 B 317 SER LYS ASP LYS LEU ILE GLY ASN THR MSE HIS PRO ALA SEQRES 17 B 317 VAL SER ILE HIS PRO ASN LEU PRO PRO ILE VAL LEU PRO SEQRES 18 B 317 THR VAL LYS LYS GLN ALA TYR ARG GLN HIS LYS ASN PRO SEQRES 19 B 317 ASN ASN GLY PRO LEU LEU ALA ILE SER GLY ILE LEU HIS SEQRES 20 B 317 GLN LEU ARG VAL GLU LYS VAL PRO GLU LYS THR SER LEU SEQRES 21 B 317 PHE ARG ILE SER LEU PRO ALA ASP MSE PHE SER VAL LYS SEQRES 22 B 317 GLU GLY MSE MSE LYS LYS ARG GLY GLU ASN SER PRO VAL SEQRES 23 B 317 VAL TYR PHE GLN ALA PRO GLU ASN PHE PRO LEU ASN GLY SEQRES 24 B 317 PHE ASN ASN ARG GLN VAL VAL LEU ALA TYR ALA ASN PRO SEQRES 25 B 317 THR LEU SER ALA VAL MODRES 5B0V MSE A 89 MET MODIFIED RESIDUE MODRES 5B0V MSE A 137 MET MODIFIED RESIDUE MODRES 5B0V MSE A 149 MET MODIFIED RESIDUE MODRES 5B0V MSE A 191 MET MODIFIED RESIDUE MODRES 5B0V MSE A 255 MET MODIFIED RESIDUE MODRES 5B0V MSE A 262 MET MODIFIED RESIDUE MODRES 5B0V MSE A 263 MET MODIFIED RESIDUE MODRES 5B0V MSE B 89 MET MODIFIED RESIDUE MODRES 5B0V MSE B 137 MET MODIFIED RESIDUE MODRES 5B0V MSE B 149 MET MODIFIED RESIDUE MODRES 5B0V MSE B 191 MET MODIFIED RESIDUE MODRES 5B0V MSE B 255 MET MODIFIED RESIDUE MODRES 5B0V MSE B 262 MET MODIFIED RESIDUE MODRES 5B0V MSE B 263 MET MODIFIED RESIDUE HET MSE A 89 8 HET MSE A 137 8 HET MSE A 149 8 HET MSE A 191 8 HET MSE A 255 8 HET MSE A 262 8 HET MSE A 263 8 HET MSE B 89 8 HET MSE B 137 8 HET MSE B 149 8 HET MSE B 191 8 HET MSE B 255 8 HET MSE B 262 8 HET MSE B 263 8 HET EOH B 401 3 HETNAM MSE SELENOMETHIONINE HETNAM EOH ETHANOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 EOH C2 H6 O FORMUL 4 HOH *35(H2 O) HELIX 1 AA1 ASN A 48 GLN A 52 5 5 HELIX 2 AA2 PHE A 92 TYR A 94 5 3 HELIX 3 AA3 PRO A 95 GLY A 106 1 12 HELIX 4 AA4 LEU A 135 GLY A 141 1 7 HELIX 5 AA5 ASN A 148 VAL A 150 5 3 HELIX 6 AA6 SER A 182 GLY A 188 1 7 HELIX 7 AA7 LYS A 210 ARG A 215 5 6 HELIX 8 AA8 ASN A 222 GLY A 230 1 9 HELIX 9 AA9 ILE A 231 LEU A 235 5 5 HELIX 10 AB1 PRO A 282 PHE A 286 5 5 HELIX 11 AB2 ASN A 297 SER A 301 5 5 HELIX 12 AB3 ASN B 48 GLN B 52 5 5 HELIX 13 AB4 PHE B 92 TYR B 94 5 3 HELIX 14 AB5 PRO B 95 GLY B 106 1 12 HELIX 15 AB6 LEU B 135 GLY B 141 1 7 HELIX 16 AB7 ASN B 148 VAL B 150 5 3 HELIX 17 AB8 PRO B 152 SER B 156 5 5 HELIX 18 AB9 SER B 182 GLY B 188 1 7 HELIX 19 AC1 LYS B 210 TYR B 214 5 5 HELIX 20 AC2 ASN B 222 GLY B 230 1 9 HELIX 21 AC3 ILE B 231 LEU B 235 5 5 HELIX 22 AC4 PRO B 282 PHE B 286 5 5 SHEET 1 AA1 4 ASN A 42 GLY A 45 0 SHEET 2 AA1 4 THR A 161 LYS A 173 1 O LEU A 169 N ASN A 42 SHEET 3 AA1 4 CYS A 58 SER A 70 -1 N GLU A 64 O VAL A 168 SHEET 4 AA1 4 VAL A 77 SER A 90 -1 O LEU A 84 N LEU A 63 SHEET 1 AA2 3 TYR A 108 THR A 114 0 SHEET 2 AA2 3 LYS A 119 ARG A 125 -1 O ASN A 124 N THR A 109 SHEET 3 AA2 3 ASN A 142 ILE A 146 -1 O GLN A 143 N VAL A 123 SHEET 1 AA3 3 ILE A 204 VAL A 205 0 SHEET 2 AA3 3 MSE A 191 SER A 196 -1 N VAL A 195 O ILE A 204 SHEET 3 AA3 3 GLN A 290 TYR A 295 -1 O GLN A 290 N SER A 196 SHEET 1 AA4 3 VAL A 237 LYS A 239 0 SHEET 2 AA4 3 LEU A 246 SER A 250 -1 O ARG A 248 N GLU A 238 SHEET 3 AA4 3 VAL A 272 GLN A 276 -1 O PHE A 275 N PHE A 247 SHEET 1 AA5 4 ASN B 42 GLY B 45 0 SHEET 2 AA5 4 PHE B 160 LYS B 173 1 O LEU B 169 N ASN B 42 SHEET 3 AA5 4 CYS B 58 ALA B 71 -1 N GLU B 64 O VAL B 168 SHEET 4 AA5 4 LYS B 78 SER B 90 -1 O LEU B 84 N LEU B 63 SHEET 1 AA6 3 TYR B 108 HIS B 115 0 SHEET 2 AA6 3 GLN B 118 ARG B 125 -1 O ASN B 124 N THR B 109 SHEET 3 AA6 3 ASN B 142 ILE B 146 -1 O PHE B 145 N VAL B 121 SHEET 1 AA7 3 ILE B 204 VAL B 205 0 SHEET 2 AA7 3 MSE B 191 SER B 196 -1 N VAL B 195 O ILE B 204 SHEET 3 AA7 3 GLN B 290 TYR B 295 -1 O GLN B 290 N SER B 196 SHEET 1 AA8 3 VAL B 237 LYS B 239 0 SHEET 2 AA8 3 LEU B 246 SER B 250 -1 O ARG B 248 N GLU B 238 SHEET 3 AA8 3 VAL B 272 GLN B 276 -1 O PHE B 275 N PHE B 247 LINK C ILE A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N SER A 90 1555 1555 1.32 LINK C ARG A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N LEU A 138 1555 1555 1.33 LINK C ASN A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N VAL A 150 1555 1555 1.33 LINK C THR A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N HIS A 192 1555 1555 1.33 LINK C ASP A 254 N MSE A 255 1555 1555 1.34 LINK C MSE A 255 N PHE A 256 1555 1555 1.34 LINK C GLY A 261 N MSE A 262 1555 1555 1.33 LINK C MSE A 262 N MSE A 263 1555 1555 1.33 LINK C ILE B 88 N MSE B 89 1555 1555 1.33 LINK C MSE B 89 N SER B 90 1555 1555 1.32 LINK C ARG B 136 N MSE B 137 1555 1555 1.33 LINK C MSE B 137 N LEU B 138 1555 1555 1.33 LINK C ASN B 148 N MSE B 149 1555 1555 1.33 LINK C MSE B 149 N VAL B 150 1555 1555 1.33 LINK C THR B 190 N MSE B 191 1555 1555 1.33 LINK C MSE B 191 N HIS B 192 1555 1555 1.33 LINK C ASP B 254 N MSE B 255 1555 1555 1.34 LINK C MSE B 255 N PHE B 256 1555 1555 1.33 LINK C GLY B 261 N MSE B 262 1555 1555 1.33 LINK C MSE B 262 N MSE B 263 1555 1555 1.33 CRYST1 95.810 107.310 127.650 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010437 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007834 0.00000