HEADER TRANSFERASE 03-APR-16 5B4F TITLE SULFUR TRANSFERASE TTUA IN COMPLEX WITH IRON SULFUR CLUSTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFUR TRANSFERASE TTUA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRNA SULFUR TRANSFERASE, VEG136 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB27 / ATCC BAA- SOURCE 3 163 / DSM 7039); SOURCE 4 ORGANISM_TAXID: 262724; SOURCE 5 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 6 GENE: TT_C0106; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SULFUR TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CHEN,S.NARAI,Y.TANAKA,M.YAO REVDAT 4 20-MAR-24 5B4F 1 REMARK REVDAT 3 24-MAY-17 5B4F 1 JRNL REVDAT 2 17-MAY-17 5B4F 1 TITLE COMPND JRNL REVDAT 1 10-MAY-17 5B4F 0 JRNL AUTH M.CHEN,S.I.ASAI,S.NARAI,S.NAMBU,N.OMURA,Y.SAKAGUCHI, JRNL AUTH 2 T.SUZUKI,M.IKEDA-SAITO,K.WATANABE,M.YAO,N.SHIGI,Y.TANAKA JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 OXYGEN-SENSITIVE 2-THIOURIDINE SYNTHESIS CATALYZED BY AN JRNL TITL 3 IRON-SULFUR PROTEIN TTUA JRNL REF PROC. NATL. ACAD. SCI. V. 114 4954 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28439027 JRNL DOI 10.1073/PNAS.1615585114 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9668 - 5.2594 1.00 2770 146 0.2179 0.2429 REMARK 3 2 5.2594 - 4.1753 1.00 2588 137 0.2027 0.2618 REMARK 3 3 4.1753 - 3.6478 1.00 2538 133 0.2047 0.2487 REMARK 3 4 3.6478 - 3.3144 1.00 2516 133 0.2237 0.2479 REMARK 3 5 3.3144 - 3.0768 1.00 2492 131 0.2379 0.2642 REMARK 3 6 3.0768 - 2.8955 1.00 2497 131 0.2585 0.2910 REMARK 3 7 2.8955 - 2.7505 1.00 2451 129 0.2662 0.3075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2413 REMARK 3 ANGLE : 1.319 3253 REMARK 3 CHIRALITY : 0.049 352 REMARK 3 PLANARITY : 0.007 410 REMARK 3 DIHEDRAL : 15.830 918 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-16. REMARK 100 THE DEPOSITION ID IS D_1300000471. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18794 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE (PH 3.8-5.6), 30 REMARK 280 -60%(V/V) 1,2-PROPANEDIOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.16667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 176.33333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.25000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 220.41667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.08333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.16667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 176.33333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 220.41667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 132.25000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.08333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -204.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -46.96000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 81.33711 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 308.58333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 174 REMARK 465 GLU A 175 REMARK 465 GLU A 176 REMARK 465 THR A 177 REMARK 465 LEU A 178 REMARK 465 SER A 179 REMARK 465 ARG A 180 REMARK 465 GLU A 257 REMARK 465 LYS A 258 REMARK 465 ILE A 259 REMARK 465 ARG A 260 REMARK 465 PRO A 261 REMARK 465 ARG A 262 REMARK 465 LEU A 263 REMARK 465 ASP A 264 REMARK 465 VAL A 265 REMARK 465 GLY A 266 REMARK 465 GLU A 267 REMARK 465 GLU A 268 REMARK 465 VAL A 269 REMARK 465 ALA A 270 REMARK 465 PRO A 317 REMARK 465 LEU A 318 REMARK 465 ARG A 319 REMARK 465 ALA A 320 REMARK 465 GLY A 321 REMARK 465 VAL A 322 REMARK 465 GLU A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 46 -53.97 -28.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 3 SG REMARK 620 2 CYS A 6 SG 102.5 REMARK 620 3 CYS A 22 SG 113.2 113.3 REMARK 620 4 HIS A 25 ND1 117.2 116.0 95.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 409 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 SF4 A 409 S1 135.1 REMARK 620 3 SF4 A 409 S2 115.2 91.9 REMARK 620 4 SF4 A 409 S3 122.6 88.1 93.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 409 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 133 SG REMARK 620 2 SF4 A 409 S1 117.9 REMARK 620 3 SF4 A 409 S2 124.5 92.6 REMARK 620 4 SF4 A 409 S4 127.4 92.0 93.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 409 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 222 SG REMARK 620 2 SF4 A 409 S2 125.5 REMARK 620 3 SF4 A 409 S3 126.7 93.9 REMARK 620 4 SF4 A 409 S4 117.3 93.4 90.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 274 SG REMARK 620 2 CYS A 277 SG 111.5 REMARK 620 3 CYS A 286 SG 103.7 123.4 REMARK 620 4 CYS A 289 SG 110.7 106.1 100.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B4E RELATED DB: PDB REMARK 900 RELATED ID: 5B4G RELATED DB: PDB DBREF 5B4F A 1 321 UNP Q72LF3 Q72LF3_THET2 1 321 SEQADV 5B4F VAL A 322 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4F GLU A 323 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4F HIS A 324 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4F HIS A 325 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4F HIS A 326 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4F HIS A 327 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4F HIS A 328 UNP Q72LF3 EXPRESSION TAG SEQADV 5B4F HIS A 329 UNP Q72LF3 EXPRESSION TAG SEQRES 1 A 329 MET VAL CYS LYS VAL CYS GLY GLN LYS ALA GLN VAL GLU SEQRES 2 A 329 MET ARG SER ARG GLY LEU ALA LEU CYS ARG GLU HIS TYR SEQRES 3 A 329 LEU ASP TRP PHE VAL LYS GLU THR GLU ARG ALA ILE ARG SEQRES 4 A 329 ARG HIS ARG MET LEU LEU PRO GLY GLU ARG VAL LEU VAL SEQRES 5 A 329 ALA VAL SER GLY GLY LYS ASP SER LEU ALA LEU TRP ASP SEQRES 6 A 329 VAL LEU SER ARG LEU GLY TYR GLN ALA VAL GLY LEU HIS SEQRES 7 A 329 ILE GLU LEU GLY ILE GLY GLU TYR SER LYS ARG SER LEU SEQRES 8 A 329 GLU VAL THR GLN ALA PHE ALA ARG GLU ARG GLY LEU GLU SEQRES 9 A 329 LEU LEU VAL VAL ASP LEU LYS GLU ALA TYR GLY PHE GLY SEQRES 10 A 329 VAL PRO GLU LEU ALA ARG LEU SER GLY ARG VAL ALA CYS SEQRES 11 A 329 SER ALA CYS GLY LEU SER LYS ARG TYR ILE ILE ASN GLN SEQRES 12 A 329 VAL ALA VAL GLU GLU GLY PHE ARG VAL VAL ALA THR GLY SEQRES 13 A 329 HIS ASN LEU ASP ASP GLU ALA ALA VAL LEU PHE GLY ASN SEQRES 14 A 329 LEU LEU ASN PRO GLN GLU GLU THR LEU SER ARG GLN GLY SEQRES 15 A 329 PRO VAL LEU PRO GLU LYS PRO GLY LEU ALA ALA ARG VAL SEQRES 16 A 329 LYS PRO PHE TYR ARG PHE SER GLU ARG GLU VAL LEU SER SEQRES 17 A 329 TYR THR LEU LEU ARG GLY ILE ARG TYR LEU HIS GLU GLU SEQRES 18 A 329 CYS PRO ASN ALA LYS GLY ALA LYS SER LEU LEU TYR LYS SEQRES 19 A 329 GLU ALA LEU ASN LEU VAL GLU ARG SER MET PRO GLY ALA SEQRES 20 A 329 LYS LEU ARG PHE LEU ASP GLY PHE LEU GLU LYS ILE ARG SEQRES 21 A 329 PRO ARG LEU ASP VAL GLY GLU GLU VAL ALA LEU ARG GLU SEQRES 22 A 329 CYS GLU ARG CYS GLY TYR PRO THR THR GLY ALA VAL CYS SEQRES 23 A 329 ALA PHE CYS ARG MET TRP ASP ALA VAL TYR ARG ARG ALA SEQRES 24 A 329 LYS LYS ARG LYS LEU LEU PRO GLU GLU VAL SER PHE ARG SEQRES 25 A 329 PRO ARG VAL LYS PRO LEU ARG ALA GLY VAL GLU HIS HIS SEQRES 26 A 329 HIS HIS HIS HIS HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET ZN A 407 1 HET ZN A 408 1 HET SF4 A 409 8 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 ZN 2(ZN 2+) FORMUL 10 SF4 FE4 S4 FORMUL 11 HOH *25(H2 O) HELIX 1 AA1 ARG A 15 GLY A 18 5 4 HELIX 2 AA2 CYS A 22 HIS A 41 1 20 HELIX 3 AA3 GLY A 57 LEU A 70 1 14 HELIX 4 AA4 ILE A 83 GLY A 102 1 20 HELIX 5 AA5 LEU A 110 GLY A 115 1 6 HELIX 6 AA6 GLY A 117 GLY A 126 1 10 HELIX 7 AA7 VAL A 128 GLU A 148 1 21 HELIX 8 AA8 ASN A 158 ASN A 172 1 15 HELIX 9 AA9 SER A 202 ARG A 213 1 12 HELIX 10 AB1 ALA A 228 MET A 244 1 17 HELIX 11 AB2 GLY A 246 LEU A 256 1 11 HELIX 12 AB3 CYS A 286 ARG A 302 1 17 SHEET 1 AA1 2 VAL A 12 MET A 14 0 SHEET 2 AA1 2 LEU A 19 LEU A 21 -1 O LEU A 19 N MET A 14 SHEET 1 AA2 6 LEU A 105 ASP A 109 0 SHEET 2 AA2 6 GLN A 73 GLU A 80 1 N GLY A 76 O LEU A 106 SHEET 3 AA2 6 ARG A 49 ALA A 53 1 N VAL A 52 O VAL A 75 SHEET 4 AA2 6 VAL A 152 ALA A 154 1 O ALA A 154 N LEU A 51 SHEET 5 AA2 6 ALA A 193 VAL A 195 1 O ALA A 193 N VAL A 153 SHEET 6 AA2 6 VAL A 184 LEU A 185 -1 N LEU A 185 O ARG A 194 SHEET 1 AA3 2 ARG A 272 GLU A 273 0 SHEET 2 AA3 2 PRO A 280 THR A 281 -1 O THR A 281 N ARG A 272 LINK SG CYS A 3 ZN ZN A 407 1555 1555 2.23 LINK SG CYS A 6 ZN ZN A 407 1555 1555 2.25 LINK SG CYS A 22 ZN ZN A 407 1555 1555 2.25 LINK ND1 HIS A 25 ZN ZN A 407 1555 1555 2.17 LINK SG CYS A 130 FE4 SF4 A 409 1555 1555 2.28 LINK SG CYS A 133 FE3 SF4 A 409 1555 1555 2.28 LINK SG CYS A 222 FE1 SF4 A 409 1555 1555 2.29 LINK SG CYS A 274 ZN ZN A 408 1555 1555 2.42 LINK SG CYS A 277 ZN ZN A 408 1555 1555 2.42 LINK SG CYS A 286 ZN ZN A 408 1555 1555 2.28 LINK SG CYS A 289 ZN ZN A 408 1555 1555 2.34 CISPEP 1 ASN A 224 ALA A 225 0 9.48 CISPEP 2 ALA A 225 LYS A 226 0 4.94 SITE 1 AC1 5 SER A 55 GLY A 57 LYS A 58 ASP A 59 SITE 2 AC1 5 SER A 60 SITE 1 AC2 4 LYS A 9 ARG A 297 LYS A 300 ARG A 312 SITE 1 AC3 5 VAL A 2 ALA A 10 ARG A 297 LYS A 301 SITE 2 AC3 5 SO4 A 404 SITE 1 AC4 4 VAL A 2 ARG A 298 LYS A 301 SO4 A 403 SITE 1 AC5 6 GLU A 13 ARG A 15 SER A 16 SER A 202 SITE 2 AC5 6 GLU A 205 HOH A 501 SITE 1 AC6 4 THR A 281 THR A 282 CYS A 286 ALA A 287 SITE 1 AC7 4 CYS A 3 CYS A 6 CYS A 22 HIS A 25 SITE 1 AC8 4 CYS A 274 CYS A 277 CYS A 286 CYS A 289 SITE 1 AC9 5 CYS A 130 CYS A 133 LYS A 137 CYS A 222 SITE 2 AC9 5 ASN A 224 CRYST1 93.920 93.920 264.500 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010647 0.006147 0.000000 0.00000 SCALE2 0.000000 0.012295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003781 0.00000