HEADER SIGNALING PROTEIN/MEMBRANE PROTEIN 12-APR-16 5B4P TITLE COMPLEX STRUCTURE OF HUMAN C5A AND ITS BINDING REPEBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPEBODY; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C5A ANAPHYLATOXIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: C5, CPAMD4; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS REPEBODY HUMAN C5A SCAFFOLD LEUCINE-RICH REPEAT, SIGNALING PROTEIN- KEYWDS 2 MEMBRANE PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.-S.KIM,J.M.CHOI,D.E.HWANG REVDAT 1 12-APR-17 5B4P 0 JRNL AUTH H.-S.KIM,J.M.CHOI,D.E.HWANG JRNL TITL COMPLEX STRUCTURE OF HUMAN C5A AND ITS BINDING REPEBODY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 32377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.272 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1723 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2008 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.4340 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5016 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.452 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.271 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.084 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5174 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7041 ; 1.628 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 653 ; 6.075 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;45.578 ;26.296 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 859 ;23.970 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.887 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 835 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3804 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5B4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-17. REMARK 100 THE DEPOSITION ID IS D_1300000527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37186 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PEG 400, AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.19600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.19600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -1 REMARK 465 LEU A 0 REMARK 465 ILE A 255 REMARK 465 ILE A 256 REMARK 465 CYS A 257 REMARK 465 PRO A 258 REMARK 465 THR A 259 REMARK 465 LEU B 72 REMARK 465 GLY B 73 REMARK 465 ARG B 74 REMARK 465 GLY C 222 REMARK 465 LEU D 72 REMARK 465 GLY D 73 REMARK 465 ARG D 74 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 224 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 226 CG CD1 CD2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 LYS C 29 CG CD CE NZ REMARK 470 GLN C 98 CG CD OE1 NE2 REMARK 470 LYS C 193 CG CD CE NZ REMARK 470 ARG C 202 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 224 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 232 CG CD CE NZ REMARK 470 LYS C 250 CG CD CE NZ REMARK 470 ILE C 255 CG1 CG2 CD1 REMARK 470 LYS D 12 CG CD CE NZ REMARK 470 LYS D 68 CG CD CE NZ REMARK 470 GLN D 71 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 112 OH TYR A 114 1.73 REMARK 500 O THR A 85 ND2 ASN A 109 1.78 REMARK 500 O ASP C 241 NZ LYS C 244 1.94 REMARK 500 OD2 ASP A 15 N SER A 55 1.94 REMARK 500 O ARG C 253 CD1 ILE C 256 2.02 REMARK 500 C ARG C 253 N ILE C 255 2.05 REMARK 500 O PHE A 176 CD1 LEU A 179 2.08 REMARK 500 O GLN A 37 ND2 ASN A 41 2.09 REMARK 500 O THR A 7 CA ALA A 34 2.12 REMARK 500 O ARG C 253 CA ILE C 255 2.16 REMARK 500 OD1 ASN A 50 N ASP A 52 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 251 C - N - CD ANGL. DEV. = -14.3 DEGREES REMARK 500 CYS B 54 CA - CB - SG ANGL. DEV. = -14.0 DEGREES REMARK 500 PRO C 221 C - N - CD ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 -168.45 -165.25 REMARK 500 THR A 7 149.13 -176.60 REMARK 500 VAL A 56 32.96 -88.25 REMARK 500 MET A 141 6.95 80.87 REMARK 500 LEU A 155 50.97 -117.91 REMARK 500 LEU A 158 98.50 -66.39 REMARK 500 ASN A 190 -158.13 -121.21 REMARK 500 GLN A 207 -62.92 -94.34 REMARK 500 ASP A 213 37.08 74.43 REMARK 500 PRO A 240 -11.63 -42.29 REMARK 500 LYS A 250 167.13 -40.86 REMARK 500 PRO A 251 -158.75 -77.80 REMARK 500 VAL A 252 176.09 164.13 REMARK 500 ARG B 40 -8.96 -53.31 REMARK 500 ASN B 64 34.18 75.62 REMARK 500 ASP C 77 71.48 45.20 REMARK 500 GLU C 112 109.35 -160.94 REMARK 500 GLN C 121 12.32 82.27 REMARK 500 GLN C 143 8.08 53.07 REMARK 500 ASN C 157 3.30 -64.25 REMARK 500 LEU C 179 49.65 -87.49 REMARK 500 TYR C 189 65.80 60.20 REMARK 500 ASP C 213 38.23 74.03 REMARK 500 SER C 234 45.36 -79.44 REMARK 500 PRO C 240 -19.20 -37.29 REMARK 500 SER C 248 64.50 67.58 REMARK 500 ARG C 253 -88.39 -74.37 REMARK 500 SER C 254 -7.37 -26.11 REMARK 500 ILE C 256 142.40 -32.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG C 253 and ILE C REMARK 800 255 DBREF 5B4P A -1 259 PDB 5B4P 5B4P -1 259 DBREF 5B4P B 1 74 UNP P01031 CO5_HUMAN 678 751 DBREF 5B4P C -1 259 PDB 5B4P 5B4P -1 259 DBREF 5B4P D 1 74 UNP P01031 CO5_HUMAN 678 751 SEQADV 5B4P SER B 0 UNP P01031 EXPRESSION TAG SEQADV 5B4P SER D 0 UNP P01031 EXPRESSION TAG SEQRES 1 A 261 ALA LEU GLU THR ILE THR VAL SER THR PRO ILE LYS GLN SEQRES 2 A 261 ILE PHE PRO ASP ASP ALA PHE ALA GLU THR ILE LYS ALA SEQRES 3 A 261 ASN LEU LYS LYS LYS SER VAL THR ASP ALA VAL THR GLN SEQRES 4 A 261 ASN GLU LEU ASN SER ILE ASP GLN ILE ILE ALA ASN ASN SEQRES 5 A 261 SER ASP ILE LYS SER VAL GLN GLY ILE GLN TYR LEU PRO SEQRES 6 A 261 ASN VAL ARG TYR LEU ALA LEU GLY GLY ASN LYS LEU HIS SEQRES 7 A 261 ASP ILE SER ALA LEU LYS GLU LEU THR ASN LEU THR TYR SEQRES 8 A 261 LEU PHE LEU ASP PHE ASN GLN LEU GLN LEU PRO ASN GLY SEQRES 9 A 261 VAL PHE ASP LYS LEU THR ASN LEU LYS GLU LEU TYR LEU SEQRES 10 A 261 SER PRO ASN GLN LEU GLN SER LEU PRO ASP GLY VAL PHE SEQRES 11 A 261 ASP LYS LEU THR ASN LEU THR ILE LEU GLY LEU ASP MET SEQRES 12 A 261 ASN GLN LEU GLN SER LEU PRO LYS GLY VAL PHE ASP LYS SEQRES 13 A 261 LEU THR ASN LEU THR GLU LEU ASP LEU SER TYR ASN GLN SEQRES 14 A 261 LEU GLN SER LEU PRO LYS GLY VAL PHE ASP LYS LEU THR SEQRES 15 A 261 GLN LEU LYS ASP LEU SER LEU SER TYR ASN GLN LEU LYS SEQRES 16 A 261 SER VAL PRO ASP GLY VAL PHE ASP ARG LEU THR SER LEU SEQRES 17 A 261 GLN TYR ILE TRP LEU HIS ASP ASN PRO TRP ASP CYS THR SEQRES 18 A 261 CYS PRO GLY ILE ARG TYR LEU SER GLU TRP ILE ASN LYS SEQRES 19 A 261 HIS SER GLY VAL VAL GLY GLY PRO ASP SER ALA LYS CYS SEQRES 20 A 261 SER GLY SER GLY LYS PRO VAL ARG SER ILE ILE CYS PRO SEQRES 21 A 261 THR SEQRES 1 B 75 SER THR LEU GLN LYS LYS ILE GLU GLU ILE ALA ALA LYS SEQRES 2 B 75 TYR LYS HIS SER VAL VAL LYS LYS CYS CYS TYR ASP GLY SEQRES 3 B 75 ALA CYS VAL ASN ASN ASP GLU THR CYS GLU GLN ARG ALA SEQRES 4 B 75 ALA ARG ILE SER LEU GLY PRO ARG CYS ILE LYS ALA PHE SEQRES 5 B 75 THR GLU CYS CYS VAL VAL ALA SER GLN LEU ARG ALA ASN SEQRES 6 B 75 ILE SER HIS LYS ASP MET GLN LEU GLY ARG SEQRES 1 C 261 ALA LEU GLU THR ILE THR VAL SER THR PRO ILE LYS GLN SEQRES 2 C 261 ILE PHE PRO ASP ASP ALA PHE ALA GLU THR ILE LYS ALA SEQRES 3 C 261 ASN LEU LYS LYS LYS SER VAL THR ASP ALA VAL THR GLN SEQRES 4 C 261 ASN GLU LEU ASN SER ILE ASP GLN ILE ILE ALA ASN ASN SEQRES 5 C 261 SER ASP ILE LYS SER VAL GLN GLY ILE GLN TYR LEU PRO SEQRES 6 C 261 ASN VAL ARG TYR LEU ALA LEU GLY GLY ASN LYS LEU HIS SEQRES 7 C 261 ASP ILE SER ALA LEU LYS GLU LEU THR ASN LEU THR TYR SEQRES 8 C 261 LEU PHE LEU ASP PHE ASN GLN LEU GLN LEU PRO ASN GLY SEQRES 9 C 261 VAL PHE ASP LYS LEU THR ASN LEU LYS GLU LEU TYR LEU SEQRES 10 C 261 SER PRO ASN GLN LEU GLN SER LEU PRO ASP GLY VAL PHE SEQRES 11 C 261 ASP LYS LEU THR ASN LEU THR ILE LEU GLY LEU ASP MET SEQRES 12 C 261 ASN GLN LEU GLN SER LEU PRO LYS GLY VAL PHE ASP LYS SEQRES 13 C 261 LEU THR ASN LEU THR GLU LEU ASP LEU SER TYR ASN GLN SEQRES 14 C 261 LEU GLN SER LEU PRO LYS GLY VAL PHE ASP LYS LEU THR SEQRES 15 C 261 GLN LEU LYS ASP LEU SER LEU SER TYR ASN GLN LEU LYS SEQRES 16 C 261 SER VAL PRO ASP GLY VAL PHE ASP ARG LEU THR SER LEU SEQRES 17 C 261 GLN TYR ILE TRP LEU HIS ASP ASN PRO TRP ASP CYS THR SEQRES 18 C 261 CYS PRO GLY ILE ARG TYR LEU SER GLU TRP ILE ASN LYS SEQRES 19 C 261 HIS SER GLY VAL VAL GLY GLY PRO ASP SER ALA LYS CYS SEQRES 20 C 261 SER GLY SER GLY LYS PRO VAL ARG SER ILE ILE CYS PRO SEQRES 21 C 261 THR SEQRES 1 D 75 SER THR LEU GLN LYS LYS ILE GLU GLU ILE ALA ALA LYS SEQRES 2 D 75 TYR LYS HIS SER VAL VAL LYS LYS CYS CYS TYR ASP GLY SEQRES 3 D 75 ALA CYS VAL ASN ASN ASP GLU THR CYS GLU GLN ARG ALA SEQRES 4 D 75 ALA ARG ILE SER LEU GLY PRO ARG CYS ILE LYS ALA PHE SEQRES 5 D 75 THR GLU CYS CYS VAL VAL ALA SER GLN LEU ARG ALA ASN SEQRES 6 D 75 ILE SER HIS LYS ASP MET GLN LEU GLY ARG HET 1PE A 301 16 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET 1PE B 101 16 HET SO4 B 102 5 HET SO4 C 301 5 HET SO4 C 302 5 HET SO4 C 303 5 HET SO4 D 101 5 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN 1PE PEG400 FORMUL 5 1PE 2(C10 H22 O6) FORMUL 6 SO4 8(O4 S 2-) FORMUL 15 HOH *69(H2 O) HELIX 1 AA1 PRO A 8 PHE A 13 1 6 HELIX 2 AA2 ASP A 15 LEU A 26 1 12 HELIX 3 AA3 THR A 36 ILE A 43 1 8 HELIX 4 AA4 ASP A 77 LYS A 82 5 6 HELIX 5 AA5 GLY A 102 LEU A 107 5 6 HELIX 6 AA6 ILE A 223 LYS A 232 1 10 HELIX 7 AA7 THR B 1 ALA B 11 1 11 HELIX 8 AA8 HIS B 15 CYS B 27 1 13 HELIX 9 AA9 THR B 33 ARG B 40 1 8 HELIX 10 AB1 GLY B 44 ASN B 64 1 21 HELIX 11 AB2 ILE C 9 PHE C 13 1 5 HELIX 12 AB3 ASP C 15 LYS C 27 1 13 HELIX 13 AB4 THR C 36 ILE C 43 1 8 HELIX 14 AB5 GLY C 58 LEU C 62 5 5 HELIX 15 AB6 ASP C 77 LYS C 82 5 6 HELIX 16 AB7 ARG C 224 HIS C 233 1 10 HELIX 17 AB8 GLY C 239 ALA C 243 5 5 HELIX 18 AB9 THR D 1 TYR D 13 1 13 HELIX 19 AC1 HIS D 15 CYS D 27 1 13 HELIX 20 AC2 THR D 33 ILE D 41 1 9 HELIX 21 AC3 GLY D 44 ALA D 63 1 20 HELIX 22 AC4 SER D 66 GLN D 71 1 6 SHEET 1 AA1 8 GLN A 45 ASN A 49 0 SHEET 2 AA1 8 TYR A 67 LEU A 75 1 O ALA A 69 N ILE A 46 SHEET 3 AA1 8 TYR A 89 LEU A 97 1 O PHE A 91 N LEU A 68 SHEET 4 AA1 8 GLU A 112 TYR A 114 1 O TYR A 114 N LEU A 90 SHEET 5 AA1 8 ILE A 136 GLY A 138 1 O GLY A 138 N LEU A 113 SHEET 6 AA1 8 GLU A 160 ASP A 162 1 O ASP A 162 N LEU A 137 SHEET 7 AA1 8 ASP A 184 SER A 186 1 O ASP A 184 N LEU A 161 SHEET 8 AA1 8 ILE A 209 TRP A 210 1 O TRP A 210 N LEU A 185 SHEET 1 AA2 2 THR C 7 PRO C 8 0 SHEET 2 AA2 2 ALA C 34 VAL C 35 -1 O VAL C 35 N THR C 7 SHEET 1 AA3 8 GLN C 45 ASN C 49 0 SHEET 2 AA3 8 TYR C 67 LEU C 75 1 O ALA C 69 N ILE C 46 SHEET 3 AA3 8 TYR C 89 LEU C 97 1 O PHE C 91 N LEU C 68 SHEET 4 AA3 8 GLU C 112 TYR C 114 1 O TYR C 114 N LEU C 92 SHEET 5 AA3 8 ILE C 136 GLY C 138 1 O GLY C 138 N LEU C 113 SHEET 6 AA3 8 GLU C 160 ASP C 162 1 O ASP C 162 N LEU C 137 SHEET 7 AA3 8 ASP C 184 SER C 186 1 O ASP C 184 N LEU C 161 SHEET 8 AA3 8 TYR C 208 TRP C 210 1 O TRP C 210 N LEU C 185 SSBOND 1 CYS A 218 CYS A 245 1555 1555 1.99 SSBOND 2 CYS B 21 CYS B 47 1555 1555 2.07 SSBOND 3 CYS B 22 CYS B 54 1555 1555 1.93 SSBOND 4 CYS B 27 CYS D 27 1555 1555 2.07 SSBOND 5 CYS B 34 CYS B 55 1555 1555 2.01 SSBOND 6 CYS C 218 CYS C 245 1555 1555 1.99 SSBOND 7 CYS D 21 CYS D 47 1555 1555 2.07 SSBOND 8 CYS D 22 CYS D 54 1555 1555 1.94 SSBOND 9 CYS D 34 CYS D 55 1555 1555 2.05 LINK O ARG C 253 N ILE C 255 1555 1555 1.19 SITE 1 AC1 3 ILE A 136 GLU A 160 LYS C 27 SITE 1 AC2 5 ASP A 77 SER A 79 ALA A 80 ASP C 77 SITE 2 AC2 5 SER C 79 SITE 1 AC3 2 ASP A 125 GLY A 126 SITE 1 AC4 3 LYS A 111 HOH A 403 HOH A 404 SITE 1 AC5 7 TYR A 67 TYR A 89 GLU A 112 LYS B 14 SITE 2 AC5 7 HIS B 15 SER B 16 SER D 16 SITE 1 AC6 3 GLU B 8 GLU C 20 LYS C 23 SITE 1 AC7 3 LEU C 161 ASP C 162 TRP C 210 SITE 1 AC8 2 ARG C 66 HOH C 419 SITE 1 AC9 2 TYR C 114 ILE C 136 SITE 1 AD1 1 ARG D 40 SITE 1 AD2 9 ARG A 253 SER C 227 ASN C 231 LYS C 250 SITE 2 AD2 9 PRO C 251 VAL C 252 SER C 254 ILE C 256 SITE 3 AD2 9 CYS C 257 CRYST1 55.837 87.553 188.392 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017909 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005308 0.00000