HEADER TRANSFERASE 26-MAY-16 5B6D TITLE CRYSTAL STRUCTURE OF CYTIDINE MONOPHOSPHATE HYDROXYMETHYLASE MILA WITH TITLE 2 CMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CMP 5-HYDROXYMETHYLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 5-329; COMPND 5 SYNONYM: CYTIDINE MONOPHOSPHATE HYDROXYMETHYLASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES RIMOFACIENS; SOURCE 3 ORGANISM_TAXID: 504097; SOURCE 4 GENE: MILA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS CMP HYDROXYMETHYLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.GONG,G.WU,X.HE REVDAT 2 08-NOV-23 5B6D 1 REMARK REVDAT 1 25-JAN-17 5B6D 0 JRNL AUTH G.ZHAO,C.CHEN,W.XIONG,T.GAO,Z.DENG,G.WU,X.HE JRNL TITL STRUCTURAL BASIS OF THE SUBSTRATE PREFERENCE TOWARDS CMP FOR JRNL TITL 2 A THYMIDYLATE SYNTHASE MILA INVOLVED IN MILDIOMYCIN JRNL TITL 3 BIOSYNTHESIS JRNL REF SCI REP V. 6 39675 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 28000775 JRNL DOI 10.1038/SREP39675 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 91516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4782 - 5.1249 1.00 3212 144 0.1752 0.1762 REMARK 3 2 5.1249 - 4.0685 1.00 3095 155 0.1356 0.1493 REMARK 3 3 4.0685 - 3.5544 0.76 2326 129 0.1520 0.1680 REMARK 3 4 3.5544 - 3.2295 1.00 3021 161 0.1613 0.1649 REMARK 3 5 3.2295 - 2.9981 1.00 3046 160 0.1698 0.1885 REMARK 3 6 2.9981 - 2.8213 1.00 2996 177 0.1714 0.2154 REMARK 3 7 2.8213 - 2.6801 1.00 3018 154 0.1741 0.1763 REMARK 3 8 2.6801 - 2.5634 1.00 2985 188 0.1612 0.1874 REMARK 3 9 2.5634 - 2.4647 1.00 2975 161 0.1613 0.1927 REMARK 3 10 2.4647 - 2.3797 1.00 3000 163 0.1576 0.1792 REMARK 3 11 2.3797 - 2.3053 1.00 3005 164 0.1605 0.2040 REMARK 3 12 2.3053 - 2.2394 0.57 1683 93 0.1664 0.2001 REMARK 3 13 2.2394 - 2.1804 0.82 2402 159 0.1595 0.1826 REMARK 3 14 2.1804 - 2.1272 1.00 2987 155 0.1628 0.1930 REMARK 3 15 2.1272 - 2.0789 1.00 3000 162 0.1603 0.1719 REMARK 3 16 2.0789 - 2.0346 1.00 2965 168 0.1608 0.1945 REMARK 3 17 2.0346 - 1.9939 1.00 3008 133 0.1570 0.1959 REMARK 3 18 1.9939 - 1.9563 1.00 2987 135 0.1709 0.1916 REMARK 3 19 1.9563 - 1.9214 0.97 2883 162 0.2150 0.2196 REMARK 3 20 1.9214 - 1.8888 0.85 2553 124 0.3700 0.4324 REMARK 3 21 1.8888 - 1.8583 1.00 2968 164 0.1790 0.2480 REMARK 3 22 1.8583 - 1.8297 1.00 2969 169 0.1811 0.2209 REMARK 3 23 1.8297 - 1.8028 1.00 3005 145 0.1774 0.1998 REMARK 3 24 1.8028 - 1.7774 1.00 2996 150 0.1956 0.2466 REMARK 3 25 1.7774 - 1.7534 1.00 2996 134 0.1976 0.2332 REMARK 3 26 1.7534 - 1.7306 1.00 2992 151 0.2138 0.2630 REMARK 3 27 1.7306 - 1.7090 1.00 2968 140 0.2225 0.2808 REMARK 3 28 1.7090 - 1.6884 1.00 2964 160 0.2365 0.2730 REMARK 3 29 1.6884 - 1.6688 1.00 2991 160 0.2458 0.2945 REMARK 3 30 1.6688 - 1.6500 1.00 2932 168 0.2644 0.3071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5254 REMARK 3 ANGLE : 0.811 7157 REMARK 3 CHIRALITY : 0.051 753 REMARK 3 PLANARITY : 0.006 941 REMARK 3 DIHEDRAL : 14.453 3044 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2900 62.3161 118.7462 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1441 REMARK 3 T33: 0.1243 T12: -0.0117 REMARK 3 T13: -0.0064 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.5696 L22: 0.6215 REMARK 3 L33: 0.6283 L12: -0.3574 REMARK 3 L13: 0.1566 L23: 0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: 0.0995 S13: -0.0505 REMARK 3 S21: -0.0741 S22: -0.0329 S23: 0.0414 REMARK 3 S31: -0.0179 S32: -0.0174 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9183 70.2184 137.5918 REMARK 3 T TENSOR REMARK 3 T11: 0.1901 T22: 0.1492 REMARK 3 T33: 0.1899 T12: 0.0117 REMARK 3 T13: 0.0048 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.1639 L22: 0.2674 REMARK 3 L33: 0.3103 L12: -0.0359 REMARK 3 L13: -0.1415 L23: -0.0298 REMARK 3 S TENSOR REMARK 3 S11: -0.0963 S12: -0.1264 S13: 0.0136 REMARK 3 S21: 0.1075 S22: 0.1300 S23: 0.1447 REMARK 3 S31: -0.0365 S32: -0.0260 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8049 68.0399 138.0375 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.1644 REMARK 3 T33: 0.1504 T12: -0.0176 REMARK 3 T13: -0.0063 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.2278 L22: 0.2983 REMARK 3 L33: 0.4808 L12: -0.0420 REMARK 3 L13: 0.1737 L23: 0.3021 REMARK 3 S TENSOR REMARK 3 S11: 0.0979 S12: -0.1891 S13: 0.0183 REMARK 3 S21: 0.0331 S22: -0.0036 S23: -0.0402 REMARK 3 S31: -0.0053 S32: 0.0781 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0718 60.2107 130.9214 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.1530 REMARK 3 T33: 0.1172 T12: -0.0195 REMARK 3 T13: 0.0061 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.0586 L22: 0.6654 REMARK 3 L33: 0.2287 L12: -0.0510 REMARK 3 L13: 0.1163 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.0214 S13: 0.0306 REMARK 3 S21: 0.0063 S22: 0.0058 S23: 0.0686 REMARK 3 S31: -0.0232 S32: 0.0224 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5596 65.1503 121.1058 REMARK 3 T TENSOR REMARK 3 T11: 0.1506 T22: 0.1206 REMARK 3 T33: 0.1205 T12: -0.0152 REMARK 3 T13: -0.0087 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.3336 L22: 0.2550 REMARK 3 L33: 0.2395 L12: -0.3258 REMARK 3 L13: 0.1790 L23: -0.0592 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: -0.0029 S13: -0.0223 REMARK 3 S21: -0.1206 S22: -0.0324 S23: 0.0535 REMARK 3 S31: -0.0438 S32: -0.0335 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3038 86.2603 127.7321 REMARK 3 T TENSOR REMARK 3 T11: 0.2338 T22: 0.1077 REMARK 3 T33: 0.1936 T12: -0.0158 REMARK 3 T13: -0.0102 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.3834 L22: 0.7273 REMARK 3 L33: 0.3640 L12: -0.5412 REMARK 3 L13: -0.0768 L23: 0.0714 REMARK 3 S TENSOR REMARK 3 S11: -0.0353 S12: 0.0294 S13: 0.1457 REMARK 3 S21: 0.0098 S22: 0.0157 S23: -0.0602 REMARK 3 S31: -0.0808 S32: 0.0057 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5108 84.5286 117.8654 REMARK 3 T TENSOR REMARK 3 T11: 0.2721 T22: 0.1840 REMARK 3 T33: 0.2390 T12: 0.0287 REMARK 3 T13: -0.0293 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.1059 L22: 0.4366 REMARK 3 L33: 0.3961 L12: 0.1970 REMARK 3 L13: 0.0893 L23: -0.1657 REMARK 3 S TENSOR REMARK 3 S11: 0.1035 S12: 0.1262 S13: 0.2503 REMARK 3 S21: -0.2324 S22: -0.0252 S23: 0.2044 REMARK 3 S31: -0.2521 S32: -0.2025 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4510 43.3285 123.1022 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.1642 REMARK 3 T33: 0.1247 T12: -0.0048 REMARK 3 T13: 0.0061 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.2526 L22: 0.8542 REMARK 3 L33: 0.4704 L12: -0.2837 REMARK 3 L13: -0.1972 L23: -0.4310 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0037 S13: -0.0789 REMARK 3 S21: -0.1392 S22: -0.0205 S23: -0.0761 REMARK 3 S31: 0.0899 S32: 0.0982 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6976 44.9507 143.3580 REMARK 3 T TENSOR REMARK 3 T11: 0.1973 T22: 0.1761 REMARK 3 T33: 0.1558 T12: 0.0281 REMARK 3 T13: 0.0017 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.1282 L22: 0.8480 REMARK 3 L33: 0.3486 L12: -0.1877 REMARK 3 L13: -0.1553 L23: 0.0342 REMARK 3 S TENSOR REMARK 3 S11: -0.1262 S12: -0.1350 S13: 0.0299 REMARK 3 S21: 0.1848 S22: 0.1340 S23: -0.0498 REMARK 3 S31: 0.0248 S32: 0.0639 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8343 52.2595 135.9660 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.1739 REMARK 3 T33: 0.1443 T12: -0.0125 REMARK 3 T13: -0.0044 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.3538 L22: 0.9249 REMARK 3 L33: 0.2642 L12: -0.6116 REMARK 3 L13: -0.0799 L23: -0.0350 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: -0.1785 S13: -0.0963 REMARK 3 S21: 0.0843 S22: 0.0234 S23: -0.0129 REMARK 3 S31: 0.0312 S32: 0.0167 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 165 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7047 42.6447 126.4927 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.1416 REMARK 3 T33: 0.1301 T12: 0.0104 REMARK 3 T13: -0.0008 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.4173 L22: 0.7239 REMARK 3 L33: 0.2627 L12: -0.3162 REMARK 3 L13: -0.0538 L23: 0.0145 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.0250 S13: -0.0370 REMARK 3 S21: -0.1749 S22: -0.0117 S23: 0.0239 REMARK 3 S31: 0.0888 S32: 0.0880 S33: 0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 231 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2963 25.1845 141.9970 REMARK 3 T TENSOR REMARK 3 T11: 0.2284 T22: 0.1883 REMARK 3 T33: 0.2883 T12: 0.0270 REMARK 3 T13: 0.0491 T23: 0.0748 REMARK 3 L TENSOR REMARK 3 L11: 0.9987 L22: 1.0040 REMARK 3 L33: 0.3798 L12: -0.3180 REMARK 3 L13: 0.1241 L23: -0.0746 REMARK 3 S TENSOR REMARK 3 S11: -0.0823 S12: -0.2735 S13: -0.4475 REMARK 3 S21: 0.0709 S22: 0.1254 S23: 0.1625 REMARK 3 S31: 0.0723 S32: -0.0796 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 283 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1483 23.5155 134.1108 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.1505 REMARK 3 T33: 0.2366 T12: 0.0379 REMARK 3 T13: 0.0272 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.2483 L22: 0.4924 REMARK 3 L33: 0.3015 L12: -0.0914 REMARK 3 L13: -0.0630 L23: -0.0989 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.0168 S13: -0.2502 REMARK 3 S21: -0.0115 S22: 0.0514 S23: -0.0215 REMARK 3 S31: 0.1480 S32: 0.0778 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91579 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.88500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JNH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE TRIHYDRATE(PH REMARK 280 6.5), 1.4 M SODIUM ACETATE TRIHYDRATE, PH 8.5, EVAPORATION, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.62133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.81067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.81067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.62133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 771 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 731 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 232 REMARK 465 THR A 233 REMARK 465 PRO A 234 REMARK 465 ASP A 235 REMARK 465 GLY A 236 REMARK 465 GLY A 237 REMARK 465 PRO A 238 REMARK 465 ARG A 239 REMARK 465 PRO A 240 REMARK 465 ALA B 232 REMARK 465 THR B 233 REMARK 465 PRO B 234 REMARK 465 ASP B 235 REMARK 465 GLY B 236 REMARK 465 GLY B 237 REMARK 465 PRO B 238 REMARK 465 ARG B 239 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 709 O HOH B 720 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 97 -33.57 -135.55 REMARK 500 ARG A 100 -87.48 -107.23 REMARK 500 ARG A 110 68.59 -153.95 REMARK 500 ASP A 152 80.26 -152.67 REMARK 500 ARG A 181 -66.76 -98.97 REMARK 500 ALA B 29 71.27 -151.64 REMARK 500 ARG B 100 -89.36 -108.09 REMARK 500 ARG B 110 59.19 -156.20 REMARK 500 ILE B 139 -63.30 -109.94 REMARK 500 ASP B 152 78.47 -153.02 REMARK 500 ARG B 181 -72.61 -98.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C5P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C5P B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B6E RELATED DB: PDB DBREF 5B6D A 5 329 UNP B4Y380 B4Y380_9ACTN 5 329 DBREF 5B6D B 5 329 UNP B4Y380 B4Y380_9ACTN 5 329 SEQRES 1 A 325 THR PHE GLY THR PHE GLN ASP ALA TYR LEU SER GLN LEU SEQRES 2 A 325 ARG ASP ILE TYR HIS SER PRO GLU PHE ARG ASN ALA PRO SEQRES 3 A 325 ARG GLY GLN ALA SER ARG GLU ARG ILE GLY ALA GLY PHE SEQRES 4 A 325 ARG LEU LEU ASP PRO VAL GLN ARG HIS ILE SER VAL PRO SEQRES 5 A 325 ALA ARG ARG ALA ASN VAL VAL PHE ASN PHE ALA GLU ALA SEQRES 6 A 325 LEU TRP TYR LEU SER GLY SER ASP ARG LEU ASP PHE ILE SEQRES 7 A 325 GLN TYR TYR ALA PRO GLY ILE ALA ALA TYR SER ALA ASP SEQRES 8 A 325 GLY ARG THR LEU ARG GLY THR ALA TYR GLY PRO ARG ILE SEQRES 9 A 325 PHE ARG HIS PRO ALA GLY GLY VAL ASN GLN TRP GLU ASN SEQRES 10 A 325 VAL VAL LYS THR LEU THR ASP ASP PRO ASP SER LYS ARG SEQRES 11 A 325 ALA VAL ILE GLN ILE PHE ASP PRO ARG GLU LEU ALA VAL SEQRES 12 A 325 ALA ASP ASN ILE ASP VAL ALA CYS THR LEU ALA LEU GLN SEQRES 13 A 325 PHE LEU ILE ARG ASP GLY LEU LEU CYS GLY ILE GLY TYR SEQRES 14 A 325 MET ARG ALA ASN ASP ALA PHE ARG GLY ALA VAL SER ASP SEQRES 15 A 325 VAL PHE SER PHE THR PHE LEU GLN GLU PHE THR ALA ARG SEQRES 16 A 325 TYR LEU GLY LEU GLY ILE GLY THR TYR HIS HIS VAL VAL SEQRES 17 A 325 GLY SER VAL HIS ILE TYR ASP SER ASP ALA ARG TRP ALA SEQRES 18 A 325 GLU ARG VAL LEU ASP ALA ALA THR PRO ASP GLY GLY PRO SEQRES 19 A 325 ARG PRO GLY PHE PRO ALA MET PRO ASP GLY ASP ASN TRP SEQRES 20 A 325 PRO HIS VAL ARG ARG VAL LEU GLU TRP GLU GLU ARG LEU SEQRES 21 A 325 ARG THR ASN ALA ALA ARG LEU SER ALA ASP ALA LEU ASP SEQRES 22 A 325 ALA LEU ASP LEU PRO ALA TYR TRP LYS HIS VAL VAL ALA SEQRES 23 A 325 LEU PHE GLU ALA HIS ARG GLN VAL ARG HIS GLU ASP THR SEQRES 24 A 325 PRO ASP ARG ALA LEU LEU ALA ALA LEU PRO GLU VAL TYR SEQRES 25 A 325 ARG GLN SER LEU ALA VAL LYS TRP PRO GLY HIS PHE GLY SEQRES 1 B 325 THR PHE GLY THR PHE GLN ASP ALA TYR LEU SER GLN LEU SEQRES 2 B 325 ARG ASP ILE TYR HIS SER PRO GLU PHE ARG ASN ALA PRO SEQRES 3 B 325 ARG GLY GLN ALA SER ARG GLU ARG ILE GLY ALA GLY PHE SEQRES 4 B 325 ARG LEU LEU ASP PRO VAL GLN ARG HIS ILE SER VAL PRO SEQRES 5 B 325 ALA ARG ARG ALA ASN VAL VAL PHE ASN PHE ALA GLU ALA SEQRES 6 B 325 LEU TRP TYR LEU SER GLY SER ASP ARG LEU ASP PHE ILE SEQRES 7 B 325 GLN TYR TYR ALA PRO GLY ILE ALA ALA TYR SER ALA ASP SEQRES 8 B 325 GLY ARG THR LEU ARG GLY THR ALA TYR GLY PRO ARG ILE SEQRES 9 B 325 PHE ARG HIS PRO ALA GLY GLY VAL ASN GLN TRP GLU ASN SEQRES 10 B 325 VAL VAL LYS THR LEU THR ASP ASP PRO ASP SER LYS ARG SEQRES 11 B 325 ALA VAL ILE GLN ILE PHE ASP PRO ARG GLU LEU ALA VAL SEQRES 12 B 325 ALA ASP ASN ILE ASP VAL ALA CYS THR LEU ALA LEU GLN SEQRES 13 B 325 PHE LEU ILE ARG ASP GLY LEU LEU CYS GLY ILE GLY TYR SEQRES 14 B 325 MET ARG ALA ASN ASP ALA PHE ARG GLY ALA VAL SER ASP SEQRES 15 B 325 VAL PHE SER PHE THR PHE LEU GLN GLU PHE THR ALA ARG SEQRES 16 B 325 TYR LEU GLY LEU GLY ILE GLY THR TYR HIS HIS VAL VAL SEQRES 17 B 325 GLY SER VAL HIS ILE TYR ASP SER ASP ALA ARG TRP ALA SEQRES 18 B 325 GLU ARG VAL LEU ASP ALA ALA THR PRO ASP GLY GLY PRO SEQRES 19 B 325 ARG PRO GLY PHE PRO ALA MET PRO ASP GLY ASP ASN TRP SEQRES 20 B 325 PRO HIS VAL ARG ARG VAL LEU GLU TRP GLU GLU ARG LEU SEQRES 21 B 325 ARG THR ASN ALA ALA ARG LEU SER ALA ASP ALA LEU ASP SEQRES 22 B 325 ALA LEU ASP LEU PRO ALA TYR TRP LYS HIS VAL VAL ALA SEQRES 23 B 325 LEU PHE GLU ALA HIS ARG GLN VAL ARG HIS GLU ASP THR SEQRES 24 B 325 PRO ASP ARG ALA LEU LEU ALA ALA LEU PRO GLU VAL TYR SEQRES 25 B 325 ARG GLN SER LEU ALA VAL LYS TRP PRO GLY HIS PHE GLY HET C5P A 401 21 HET C5P B 401 21 HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE FORMUL 3 C5P 2(C9 H14 N3 O8 P) FORMUL 5 HOH *547(H2 O) HELIX 1 AA1 THR A 8 SER A 23 1 16 HELIX 2 AA2 ALA A 29 GLN A 33 5 5 HELIX 3 AA3 VAL A 55 ARG A 59 5 5 HELIX 4 AA4 ASN A 61 SER A 74 1 14 HELIX 5 AA5 ARG A 78 TYR A 84 1 7 HELIX 6 AA6 ALA A 86 SER A 93 5 8 HELIX 7 AA7 ALA A 103 ARG A 110 1 8 HELIX 8 AA8 ASN A 117 ASP A 129 1 13 HELIX 9 AA9 ARG A 143 VAL A 147 5 5 HELIX 10 AB1 ARG A 181 GLY A 202 1 22 HELIX 11 AB2 ASP A 221 ALA A 231 1 11 HELIX 12 AB3 ASN A 250 THR A 266 1 17 HELIX 13 AB4 SER A 272 ALA A 278 1 7 HELIX 14 AB5 PRO A 282 HIS A 300 1 19 HELIX 15 AB6 ASP A 305 LEU A 312 1 8 HELIX 16 AB7 PRO A 313 TRP A 324 1 12 HELIX 17 AB8 TRP A 324 GLY A 329 1 6 HELIX 18 AB9 THR B 8 SER B 23 1 16 HELIX 19 AC1 ALA B 29 GLN B 33 5 5 HELIX 20 AC2 VAL B 55 ARG B 59 5 5 HELIX 21 AC3 ASN B 61 SER B 74 1 14 HELIX 22 AC4 ARG B 78 TYR B 84 1 7 HELIX 23 AC5 ALA B 86 SER B 93 5 8 HELIX 24 AC6 ALA B 103 ARG B 110 1 8 HELIX 25 AC7 ASN B 117 ASP B 129 1 13 HELIX 26 AC8 ASP B 141 ALA B 146 5 6 HELIX 27 AC9 ARG B 181 LEU B 201 1 21 HELIX 28 AD1 ASP B 221 ALA B 231 1 11 HELIX 29 AD2 ASN B 250 THR B 266 1 17 HELIX 30 AD3 SER B 272 ALA B 278 1 7 HELIX 31 AD4 PRO B 282 HIS B 300 1 19 HELIX 32 AD5 ASP B 305 ALA B 311 1 7 HELIX 33 AD6 PRO B 313 TRP B 324 1 12 HELIX 34 AD7 TRP B 324 GLY B 329 1 6 SHEET 1 AA1 6 PHE A 26 ASN A 28 0 SHEET 2 AA1 6 SER A 35 LEU A 45 -1 O SER A 35 N ASN A 28 SHEET 3 AA1 6 GLY A 204 TYR A 218 -1 O TYR A 208 N LEU A 45 SHEET 4 AA1 6 LEU A 167 ASP A 178 1 N GLY A 172 O HIS A 209 SHEET 5 AA1 6 THR A 156 ARG A 164 -1 N LEU A 162 O CYS A 169 SHEET 6 AA1 6 VAL A 136 GLN A 138 -1 N ILE A 137 O LEU A 159 SHEET 1 AA2 6 PHE B 26 ASN B 28 0 SHEET 2 AA2 6 SER B 35 LEU B 45 -1 O SER B 35 N ASN B 28 SHEET 3 AA2 6 GLY B 204 TYR B 218 -1 O TYR B 208 N LEU B 45 SHEET 4 AA2 6 LEU B 167 ASP B 178 1 N LEU B 168 O GLY B 204 SHEET 5 AA2 6 THR B 156 ARG B 164 -1 N LEU B 162 O CYS B 169 SHEET 6 AA2 6 VAL B 136 GLN B 138 -1 N ILE B 137 O LEU B 159 SITE 1 AC1 16 ARG A 31 TYR A 104 CYS A 155 ARG A 175 SITE 2 AC1 16 ALA A 176 ASN A 177 ASP A 178 ASP A 186 SITE 3 AC1 16 HIS A 216 TYR A 218 HOH A 572 HOH A 621 SITE 4 AC1 16 HOH A 661 LYS B 133 ARG B 134 HOH B 648 SITE 1 AC2 16 LYS A 133 ARG A 134 ARG B 31 TYR B 104 SITE 2 AC2 16 CYS B 155 ARG B 175 ALA B 176 ASN B 177 SITE 3 AC2 16 ASP B 178 ASP B 186 HIS B 216 TYR B 218 SITE 4 AC2 16 HOH B 524 HOH B 556 HOH B 634 HOH B 670 CRYST1 109.601 109.601 113.432 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009124 0.005268 0.000000 0.00000 SCALE2 0.000000 0.010535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008816 0.00000