HEADER TRANSCRIPTION 02-JUN-16 5B70 TITLE OXYR2 E204G REGULATORY DOMAIN FROM VIBRIO VULNIFICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 86-301; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672; SOURCE 4 STRAIN: MO6-24/O; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LYSR-TYPE TRANSCRIPTION REGULATOR, LTTR, OXYR, H2O2, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR I.JO,N.-C.HA REVDAT 3 20-MAR-24 5B70 1 REMARK REVDAT 2 10-MAY-17 5B70 1 JRNL REVDAT 1 15-MAR-17 5B70 0 JRNL AUTH I.JO,D.KIM,Y.-J.BANG,J.AHN,S.H.CHOI,N.-C.HA JRNL TITL THE HYDROGEN PEROXIDE HYPERSENSITIVITY OF OXYR2 IN VIBRIO JRNL TITL 2 VULNIFICUS DEPENDS ON CONFORMATIONAL CONSTRAINTS JRNL REF J. BIOL. CHEM. V. 292 7223 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28264933 JRNL DOI 10.1074/JBC.M116.743765 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.510 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 53827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.730 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9609 - 5.5359 0.99 4056 155 0.1656 0.1910 REMARK 3 2 5.5359 - 4.3970 1.00 3892 157 0.1506 0.1984 REMARK 3 3 4.3970 - 3.8421 1.00 3897 150 0.1646 0.2102 REMARK 3 4 3.8421 - 3.4912 1.00 3888 154 0.2021 0.2504 REMARK 3 5 3.4912 - 3.2412 1.00 3853 148 0.2254 0.2524 REMARK 3 6 3.2412 - 3.0502 0.99 3836 147 0.2442 0.3007 REMARK 3 7 3.0502 - 2.8975 0.98 3781 150 0.2708 0.3126 REMARK 3 8 2.8975 - 2.7715 0.98 3768 152 0.2960 0.3644 REMARK 3 9 2.7715 - 2.6648 0.97 3741 146 0.3068 0.3536 REMARK 3 10 2.6648 - 2.5729 0.96 3740 144 0.3218 0.3635 REMARK 3 11 2.5729 - 2.4925 0.95 3613 135 0.3334 0.3660 REMARK 3 12 2.4925 - 2.4212 0.91 3512 134 0.3339 0.3853 REMARK 3 13 2.4212 - 2.3575 0.85 3271 123 0.3503 0.3624 REMARK 3 14 2.3575 - 2.3000 0.77 2972 112 0.3599 0.3736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6686 REMARK 3 ANGLE : 0.586 9075 REMARK 3 CHIRALITY : 0.044 1086 REMARK 3 PLANARITY : 0.004 1177 REMARK 3 DIHEDRAL : 12.300 4107 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5B70 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000641. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 33.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 0.1M TRIS-HCL (PH REMARK 280 9.0), 14% PEG 4000, 2MM TCEP, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.55467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.10933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.10933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.55467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O GLY D 269 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 86 REMARK 465 LEU A 87 REMARK 465 GLY A 88 REMARK 465 SER A 89 REMARK 465 LEU A 90 REMARK 465 CYS A 91 REMARK 465 GLN A 92 REMARK 465 GLY A 93 REMARK 465 ASP A 94 REMARK 465 SER A 95 REMARK 465 GLY B 88 REMARK 465 SER B 89 REMARK 465 LEU B 90 REMARK 465 CYS B 91 REMARK 465 GLN B 92 REMARK 465 LEU C 87 REMARK 465 GLY C 88 REMARK 465 SER C 89 REMARK 465 LEU C 90 REMARK 465 CYS C 91 REMARK 465 GLN C 92 REMARK 465 GLY C 93 REMARK 465 ASP C 94 REMARK 465 LEU D 90 REMARK 465 CYS D 91 REMARK 465 GLN D 92 REMARK 465 GLY D 93 REMARK 465 ASP D 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 193 NZ LYS A 222 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C GLY D 269 O GLY D 269 5677 1.25 REMARK 500 CA GLY D 269 O GLY D 269 5677 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY D 269 CA - C - O ANGL. DEV. = -18.2 DEGREES REMARK 500 GLY D 269 O - C - N ANGL. DEV. = 23.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 108 -35.50 -131.36 REMARK 500 ASP A 160 13.43 58.98 REMARK 500 ASP A 219 97.69 -68.19 REMARK 500 LYS A 222 -9.81 -59.58 REMARK 500 ASP B 160 99.40 -68.20 REMARK 500 ASP C 160 -121.26 56.65 REMARK 500 ARG C 286 34.79 -89.24 REMARK 500 MET D 96 31.75 -86.84 REMARK 500 ILE D 108 -42.17 -132.87 REMARK 500 GLN D 126 35.87 -99.39 REMARK 500 ASP D 160 -119.63 56.74 REMARK 500 ARG D 286 36.35 -91.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B7D RELATED DB: PDB REMARK 900 RELATED ID: 5B7H RELATED DB: PDB REMARK 900 RELATED ID: 5X0Q RELATED DB: PDB REMARK 900 RELATED ID: 5X0V RELATED DB: PDB DBREF1 5B70 A 86 301 UNP A0A087I947_VIBVL DBREF2 5B70 A A0A087I947 86 301 DBREF1 5B70 B 86 301 UNP A0A087I947_VIBVL DBREF2 5B70 B A0A087I947 86 301 DBREF1 5B70 C 86 301 UNP A0A087I947_VIBVL DBREF2 5B70 C A0A087I947 86 301 DBREF1 5B70 D 86 301 UNP A0A087I947_VIBVL DBREF2 5B70 D A0A087I947 86 301 SEQADV 5B70 GLY A 83 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 ALA A 84 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 MET A 85 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 GLY A 204 UNP A0A087I94 GLU 204 ENGINEERED MUTATION SEQADV 5B70 GLY B 83 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 ALA B 84 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 MET B 85 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 GLY B 204 UNP A0A087I94 GLU 204 ENGINEERED MUTATION SEQADV 5B70 GLY C 83 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 ALA C 84 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 MET C 85 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 GLY C 204 UNP A0A087I94 GLU 204 ENGINEERED MUTATION SEQADV 5B70 GLY D 83 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 ALA D 84 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 MET D 85 UNP A0A087I94 EXPRESSION TAG SEQADV 5B70 GLY D 204 UNP A0A087I94 GLU 204 ENGINEERED MUTATION SEQRES 1 A 219 GLY ALA MET GLU LEU GLY SER LEU CYS GLN GLY ASP SER SEQRES 2 A 219 MET GLN GLY GLN LEU LYS LEU GLY CYS ILE PRO THR ILE SEQRES 3 A 219 ALA PRO PHE LEU LEU CYS ASP LEU VAL GLN GLU ILE ASN SEQRES 4 A 219 GLN ARG PHE PRO GLN LEU ASN LEU LEU LEU ARG GLU ASP SEQRES 5 A 219 THR THR THR ASN LEU LEU THR ALA LEU ARG HIS GLY GLU SEQRES 6 A 219 LEU ASP VAL LEU ILE LEU ALA LEU PRO VAL GLU ILE ASP SEQRES 7 A 219 GLY MET GLU SER ARG VAL VAL GLY GLN ASP PRO PHE LYS SEQRES 8 A 219 MET VAL ILE SER ARG HIS GLN ALA GLY ALA ILE LYS VAL SEQRES 9 A 219 PRO ILE LYS TYR ASP ASP LEU PRO ASP GLU SER VAL PHE SEQRES 10 A 219 LEU LEU GLU LYS GLY HIS CYS LEU THR GLU HIS ALA VAL SEQRES 11 A 219 SER ALA CYS LYS LEU THR ASP LYS GLU LYS ILE ASN PRO SEQRES 12 A 219 PHE SER ALA THR SER LEU HIS THR LEU VAL GLN MET VAL SEQRES 13 A 219 ALA ASN GLY LEU GLY THR THR PHE ILE PRO GLN MET ALA SEQRES 14 A 219 ILE ASP HIS GLY LEU LEU ASP ASN GLN ASN LEU VAL VAL SEQRES 15 A 219 ILE GLU PRO PRO GLY GLN GLN ALA TYR ARG ASP ILE GLY SEQRES 16 A 219 LEU VAL TRP ARG PRO SER SER SER ARG SER LYS THR PHE SEQRES 17 A 219 ASN GLN LEU ALA GLU VAL VAL SER GLU LEU LEU SEQRES 1 B 219 GLY ALA MET GLU LEU GLY SER LEU CYS GLN GLY ASP SER SEQRES 2 B 219 MET GLN GLY GLN LEU LYS LEU GLY CYS ILE PRO THR ILE SEQRES 3 B 219 ALA PRO PHE LEU LEU CYS ASP LEU VAL GLN GLU ILE ASN SEQRES 4 B 219 GLN ARG PHE PRO GLN LEU ASN LEU LEU LEU ARG GLU ASP SEQRES 5 B 219 THR THR THR ASN LEU LEU THR ALA LEU ARG HIS GLY GLU SEQRES 6 B 219 LEU ASP VAL LEU ILE LEU ALA LEU PRO VAL GLU ILE ASP SEQRES 7 B 219 GLY MET GLU SER ARG VAL VAL GLY GLN ASP PRO PHE LYS SEQRES 8 B 219 MET VAL ILE SER ARG HIS GLN ALA GLY ALA ILE LYS VAL SEQRES 9 B 219 PRO ILE LYS TYR ASP ASP LEU PRO ASP GLU SER VAL PHE SEQRES 10 B 219 LEU LEU GLU LYS GLY HIS CYS LEU THR GLU HIS ALA VAL SEQRES 11 B 219 SER ALA CYS LYS LEU THR ASP LYS GLU LYS ILE ASN PRO SEQRES 12 B 219 PHE SER ALA THR SER LEU HIS THR LEU VAL GLN MET VAL SEQRES 13 B 219 ALA ASN GLY LEU GLY THR THR PHE ILE PRO GLN MET ALA SEQRES 14 B 219 ILE ASP HIS GLY LEU LEU ASP ASN GLN ASN LEU VAL VAL SEQRES 15 B 219 ILE GLU PRO PRO GLY GLN GLN ALA TYR ARG ASP ILE GLY SEQRES 16 B 219 LEU VAL TRP ARG PRO SER SER SER ARG SER LYS THR PHE SEQRES 17 B 219 ASN GLN LEU ALA GLU VAL VAL SER GLU LEU LEU SEQRES 1 C 219 GLY ALA MET GLU LEU GLY SER LEU CYS GLN GLY ASP SER SEQRES 2 C 219 MET GLN GLY GLN LEU LYS LEU GLY CYS ILE PRO THR ILE SEQRES 3 C 219 ALA PRO PHE LEU LEU CYS ASP LEU VAL GLN GLU ILE ASN SEQRES 4 C 219 GLN ARG PHE PRO GLN LEU ASN LEU LEU LEU ARG GLU ASP SEQRES 5 C 219 THR THR THR ASN LEU LEU THR ALA LEU ARG HIS GLY GLU SEQRES 6 C 219 LEU ASP VAL LEU ILE LEU ALA LEU PRO VAL GLU ILE ASP SEQRES 7 C 219 GLY MET GLU SER ARG VAL VAL GLY GLN ASP PRO PHE LYS SEQRES 8 C 219 MET VAL ILE SER ARG HIS GLN ALA GLY ALA ILE LYS VAL SEQRES 9 C 219 PRO ILE LYS TYR ASP ASP LEU PRO ASP GLU SER VAL PHE SEQRES 10 C 219 LEU LEU GLU LYS GLY HIS CYS LEU THR GLU HIS ALA VAL SEQRES 11 C 219 SER ALA CYS LYS LEU THR ASP LYS GLU LYS ILE ASN PRO SEQRES 12 C 219 PHE SER ALA THR SER LEU HIS THR LEU VAL GLN MET VAL SEQRES 13 C 219 ALA ASN GLY LEU GLY THR THR PHE ILE PRO GLN MET ALA SEQRES 14 C 219 ILE ASP HIS GLY LEU LEU ASP ASN GLN ASN LEU VAL VAL SEQRES 15 C 219 ILE GLU PRO PRO GLY GLN GLN ALA TYR ARG ASP ILE GLY SEQRES 16 C 219 LEU VAL TRP ARG PRO SER SER SER ARG SER LYS THR PHE SEQRES 17 C 219 ASN GLN LEU ALA GLU VAL VAL SER GLU LEU LEU SEQRES 1 D 219 GLY ALA MET GLU LEU GLY SER LEU CYS GLN GLY ASP SER SEQRES 2 D 219 MET GLN GLY GLN LEU LYS LEU GLY CYS ILE PRO THR ILE SEQRES 3 D 219 ALA PRO PHE LEU LEU CYS ASP LEU VAL GLN GLU ILE ASN SEQRES 4 D 219 GLN ARG PHE PRO GLN LEU ASN LEU LEU LEU ARG GLU ASP SEQRES 5 D 219 THR THR THR ASN LEU LEU THR ALA LEU ARG HIS GLY GLU SEQRES 6 D 219 LEU ASP VAL LEU ILE LEU ALA LEU PRO VAL GLU ILE ASP SEQRES 7 D 219 GLY MET GLU SER ARG VAL VAL GLY GLN ASP PRO PHE LYS SEQRES 8 D 219 MET VAL ILE SER ARG HIS GLN ALA GLY ALA ILE LYS VAL SEQRES 9 D 219 PRO ILE LYS TYR ASP ASP LEU PRO ASP GLU SER VAL PHE SEQRES 10 D 219 LEU LEU GLU LYS GLY HIS CYS LEU THR GLU HIS ALA VAL SEQRES 11 D 219 SER ALA CYS LYS LEU THR ASP LYS GLU LYS ILE ASN PRO SEQRES 12 D 219 PHE SER ALA THR SER LEU HIS THR LEU VAL GLN MET VAL SEQRES 13 D 219 ALA ASN GLY LEU GLY THR THR PHE ILE PRO GLN MET ALA SEQRES 14 D 219 ILE ASP HIS GLY LEU LEU ASP ASN GLN ASN LEU VAL VAL SEQRES 15 D 219 ILE GLU PRO PRO GLY GLN GLN ALA TYR ARG ASP ILE GLY SEQRES 16 D 219 LEU VAL TRP ARG PRO SER SER SER ARG SER LYS THR PHE SEQRES 17 D 219 ASN GLN LEU ALA GLU VAL VAL SER GLU LEU LEU HET GOL C 401 6 HET GOL D 401 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *173(H2 O) HELIX 1 AA1 ILE A 108 PHE A 124 1 17 HELIX 2 AA2 THR A 135 HIS A 145 1 11 HELIX 3 AA3 HIS A 179 ALA A 181 5 3 HELIX 4 AA4 LYS A 189 LEU A 193 5 5 HELIX 5 AA5 HIS A 205 CYS A 215 1 11 HELIX 6 AA6 ASP A 219 ILE A 223 5 5 HELIX 7 AA7 SER A 230 ASN A 240 1 11 HELIX 8 AA8 GLN A 249 GLY A 255 1 7 HELIX 9 AA9 ARG A 286 GLU A 299 1 14 HELIX 10 AB1 ILE B 108 PHE B 124 1 17 HELIX 11 AB2 THR B 135 HIS B 145 1 11 HELIX 12 AB3 LYS B 189 LEU B 193 5 5 HELIX 13 AB4 CYS B 206 CYS B 215 1 10 HELIX 14 AB5 ASP B 219 GLU B 221 5 3 HELIX 15 AB6 SER B 230 ASN B 240 1 11 HELIX 16 AB7 GLN B 249 GLY B 255 1 7 HELIX 17 AB8 ARG B 286 LEU B 300 1 15 HELIX 18 AB9 ILE C 108 PHE C 124 1 17 HELIX 19 AC1 THR C 135 HIS C 145 1 11 HELIX 20 AC2 ARG C 178 GLY C 182 1 5 HELIX 21 AC3 LYS C 189 LEU C 193 5 5 HELIX 22 AC4 HIS C 205 CYS C 215 1 11 HELIX 23 AC5 ASP C 219 ILE C 223 5 5 HELIX 24 AC6 SER C 230 ASN C 240 1 11 HELIX 25 AC7 GLN C 249 GLY C 255 1 7 HELIX 26 AC8 ARG C 286 GLU C 299 1 14 HELIX 27 AC9 ILE D 108 PHE D 124 1 17 HELIX 28 AD1 THR D 135 HIS D 145 1 11 HELIX 29 AD2 LYS D 189 LEU D 193 5 5 HELIX 30 AD3 HIS D 205 CYS D 215 1 11 HELIX 31 AD4 ASP D 219 ILE D 223 5 5 HELIX 32 AD5 SER D 230 ASN D 240 1 11 HELIX 33 AD6 GLN D 249 GLY D 255 1 7 HELIX 34 AD7 ARG D 286 LEU D 300 1 15 SHEET 1 AA1 6 LEU A 127 GLU A 133 0 SHEET 2 AA1 6 GLY A 98 CYS A 104 1 N LEU A 102 O LEU A 130 SHEET 3 AA1 6 VAL A 150 LEU A 155 1 O VAL A 150 N GLY A 103 SHEET 4 AA1 6 TYR A 273 TRP A 280 -1 O VAL A 279 N LEU A 151 SHEET 5 AA1 6 GLU A 163 SER A 177 -1 N ASP A 170 O ARG A 274 SHEET 6 AA1 6 THR A 245 PRO A 248 -1 O ILE A 247 N LYS A 173 SHEET 1 AA2 6 LEU A 127 GLU A 133 0 SHEET 2 AA2 6 GLY A 98 CYS A 104 1 N LEU A 102 O LEU A 130 SHEET 3 AA2 6 VAL A 150 LEU A 155 1 O VAL A 150 N GLY A 103 SHEET 4 AA2 6 TYR A 273 TRP A 280 -1 O VAL A 279 N LEU A 151 SHEET 5 AA2 6 GLU A 163 SER A 177 -1 N ASP A 170 O ARG A 274 SHEET 6 AA2 6 LEU A 262 ILE A 265 -1 O ILE A 265 N MET A 174 SHEET 1 AA3 6 LEU B 127 GLU B 133 0 SHEET 2 AA3 6 GLY B 98 CYS B 104 1 N LEU B 102 O LEU B 130 SHEET 3 AA3 6 VAL B 150 LEU B 155 1 O VAL B 150 N GLY B 103 SHEET 4 AA3 6 TYR B 273 TRP B 280 -1 O ASP B 275 N LEU B 155 SHEET 5 AA3 6 GLU B 163 SER B 177 -1 N VAL B 167 O ILE B 276 SHEET 6 AA3 6 THR B 245 PRO B 248 -1 O ILE B 247 N LYS B 173 SHEET 1 AA4 6 LEU B 127 GLU B 133 0 SHEET 2 AA4 6 GLY B 98 CYS B 104 1 N LEU B 102 O LEU B 130 SHEET 3 AA4 6 VAL B 150 LEU B 155 1 O VAL B 150 N GLY B 103 SHEET 4 AA4 6 TYR B 273 TRP B 280 -1 O ASP B 275 N LEU B 155 SHEET 5 AA4 6 GLU B 163 SER B 177 -1 N VAL B 167 O ILE B 276 SHEET 6 AA4 6 LEU B 262 ILE B 265 -1 O ILE B 265 N MET B 174 SHEET 1 AA5 2 VAL B 198 LEU B 201 0 SHEET 2 AA5 2 ILE B 223 ALA B 228 1 O ASN B 224 N VAL B 198 SHEET 1 AA6 6 LEU C 127 GLU C 133 0 SHEET 2 AA6 6 GLY C 98 CYS C 104 1 N GLY C 98 O ASN C 128 SHEET 3 AA6 6 VAL C 150 LEU C 155 1 O ILE C 152 N GLY C 103 SHEET 4 AA6 6 TYR C 273 TRP C 280 -1 O VAL C 279 N LEU C 151 SHEET 5 AA6 6 GLU C 163 SER C 177 -1 N ASP C 170 O ARG C 274 SHEET 6 AA6 6 THR C 245 PRO C 248 -1 O ILE C 247 N LYS C 173 SHEET 1 AA7 6 LEU C 127 GLU C 133 0 SHEET 2 AA7 6 GLY C 98 CYS C 104 1 N GLY C 98 O ASN C 128 SHEET 3 AA7 6 VAL C 150 LEU C 155 1 O ILE C 152 N GLY C 103 SHEET 4 AA7 6 TYR C 273 TRP C 280 -1 O VAL C 279 N LEU C 151 SHEET 5 AA7 6 GLU C 163 SER C 177 -1 N ASP C 170 O ARG C 274 SHEET 6 AA7 6 LEU C 262 ILE C 265 -1 O ILE C 265 N MET C 174 SHEET 1 AA8 6 LEU D 127 GLU D 133 0 SHEET 2 AA8 6 GLY D 98 CYS D 104 1 N LEU D 102 O LEU D 130 SHEET 3 AA8 6 VAL D 150 LEU D 155 1 O VAL D 150 N GLY D 103 SHEET 4 AA8 6 TYR D 273 TRP D 280 -1 O VAL D 279 N LEU D 151 SHEET 5 AA8 6 GLU D 163 SER D 177 -1 N VAL D 167 O ILE D 276 SHEET 6 AA8 6 THR D 245 PRO D 248 -1 O ILE D 247 N LYS D 173 SHEET 1 AA9 6 LEU D 127 GLU D 133 0 SHEET 2 AA9 6 GLY D 98 CYS D 104 1 N LEU D 102 O LEU D 130 SHEET 3 AA9 6 VAL D 150 LEU D 155 1 O VAL D 150 N GLY D 103 SHEET 4 AA9 6 TYR D 273 TRP D 280 -1 O VAL D 279 N LEU D 151 SHEET 5 AA9 6 GLU D 163 SER D 177 -1 N VAL D 167 O ILE D 276 SHEET 6 AA9 6 LEU D 262 ILE D 265 -1 O ILE D 265 N MET D 174 CISPEP 1 LEU A 155 PRO A 156 0 3.11 CISPEP 2 VAL A 186 PRO A 187 0 3.39 CISPEP 3 LEU B 155 PRO B 156 0 2.32 CISPEP 4 VAL B 186 PRO B 187 0 -1.05 CISPEP 5 LEU C 155 PRO C 156 0 2.57 CISPEP 6 VAL C 186 PRO C 187 0 0.58 CISPEP 7 LEU D 155 PRO D 156 0 3.42 CISPEP 8 VAL D 186 PRO D 187 0 2.90 SITE 1 AC1 4 THR C 137 GLY C 204 GLU C 209 HOH C 502 SITE 1 AC2 5 THR D 137 VAL D 157 GLY D 204 CYS D 206 SITE 2 AC2 5 GLU D 209 CRYST1 141.375 141.375 109.664 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007073 0.004084 0.000000 0.00000 SCALE2 0.000000 0.008168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009119 0.00000