data_5BJP # _entry.id 5BJP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5BJP pdb_00005bjp 10.2210/pdb5bjp/pdb WWPDB D_1001310022 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-09-27 2 'Structure model' 1 1 2017-10-11 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 3 'Structure model' '_citation.journal_volume' 10 3 'Structure model' '_citation.page_first' 11 3 'Structure model' '_citation.page_last' 12 4 'Structure model' '_database_2.pdbx_DOI' 13 4 'Structure model' '_database_2.pdbx_database_accession' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5BJP _pdbx_database_status.recvd_initial_deposition_date 2016-08-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Warner, K.D.' 1 ? 'Song, W.' 2 ? 'Filonov, G.S.' 3 ? 'Jaffrey, S.R.' 4 ? ;Ferre-D'Amare, A.R. ; 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 1195 _citation.page_last 1201 _citation.title 'A homodimer interface without base pairs in an RNA mimic of red fluorescent protein.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nchembio.2475 _citation.pdbx_database_id_PubMed 28945234 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Warner, K.D.' 1 ? primary 'Sjekloca, L.' 2 ? primary 'Song, W.' 3 ? primary 'Filonov, G.S.' 4 ? primary 'Jaffrey, S.R.' 5 ? primary ;Ferre-D'Amare, A.R. ; 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (36-MER)' 11794.100 2 ? ? ? ? 2 non-polymer syn 'IRIDIUM ION' 192.217 2 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 1 ? ? ? ? 6 non-polymer syn '(5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one' 281.215 1 ? ? ? ? 7 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGCGAGGAAGGAGGUCUGAGGAGGUCACUGCGCC _entity_poly.pdbx_seq_one_letter_code_can GGCGCGAGGAAGGAGGUCUGAGGAGGUCACUGCGCC _entity_poly.pdbx_strand_id E,Y _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IRIDIUM ION' IR 3 'POTASSIUM ION' K 4 'MAGNESIUM ION' MG 5 'DIMETHYL SULFOXIDE' DMS 6 '(5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one' 747 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 C n 1 6 G n 1 7 A n 1 8 G n 1 9 G n 1 10 A n 1 11 A n 1 12 G n 1 13 G n 1 14 A n 1 15 G n 1 16 G n 1 17 U n 1 18 C n 1 19 U n 1 20 G n 1 21 A n 1 22 G n 1 23 G n 1 24 A n 1 25 G n 1 26 G n 1 27 U n 1 28 C n 1 29 A n 1 30 C n 1 31 U n 1 32 G n 1 33 C n 1 34 G n 1 35 C n 1 36 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 36 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 747 non-polymer . '(5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one' ? 'C12 H9 F2 N3 O3' 281.215 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 IR non-polymer . 'IRIDIUM ION' ? 'Ir 4' 192.217 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G E . n A 1 2 G 2 2 2 G G E . n A 1 3 C 3 3 3 C C E . n A 1 4 G 4 4 4 G G E . n A 1 5 C 5 5 5 C C E . n A 1 6 G 6 6 6 G G E . n A 1 7 A 7 7 7 A A E . n A 1 8 G 8 8 8 G G E . n A 1 9 G 9 9 9 G G E . n A 1 10 A 10 10 10 A A E . n A 1 11 A 11 11 11 A A E . n A 1 12 G 12 12 12 G G E . n A 1 13 G 13 13 13 G G E . n A 1 14 A 14 14 14 A A E . n A 1 15 G 15 15 15 G G E . n A 1 16 G 16 16 16 G G E . n A 1 17 U 17 17 17 U U E . n A 1 18 C 18 18 18 C C E . n A 1 19 U 19 19 19 U U E . n A 1 20 G 20 20 20 G G E . n A 1 21 A 21 21 21 A A E . n A 1 22 G 22 22 22 G G E . n A 1 23 G 23 23 23 G G E . n A 1 24 A 24 24 24 A A E . n A 1 25 G 25 25 25 G G E . n A 1 26 G 26 26 26 G G E . n A 1 27 U 27 27 27 U U E . n A 1 28 C 28 28 28 C C E . n A 1 29 A 29 29 29 A A E . n A 1 30 C 30 30 30 C C E . n A 1 31 U 31 31 31 U U E . n A 1 32 G 32 32 32 G G E . n A 1 33 C 33 33 33 C C E . n A 1 34 G 34 34 34 G G E . n A 1 35 C 35 35 35 C C E . n A 1 36 C 36 36 36 C C E . n B 1 1 G 1 1 1 G G Y . n B 1 2 G 2 2 2 G G Y . n B 1 3 C 3 3 3 C C Y . n B 1 4 G 4 4 4 G G Y . n B 1 5 C 5 5 5 C C Y . n B 1 6 G 6 6 6 G G Y . n B 1 7 A 7 7 7 A A Y . n B 1 8 G 8 8 8 G G Y . n B 1 9 G 9 9 9 G G Y . n B 1 10 A 10 10 10 A A Y . n B 1 11 A 11 11 11 A A Y . n B 1 12 G 12 12 12 G G Y . n B 1 13 G 13 13 13 G G Y . n B 1 14 A 14 14 14 A A Y . n B 1 15 G 15 15 15 G G Y . n B 1 16 G 16 16 16 G G Y . n B 1 17 U 17 17 17 U U Y . n B 1 18 C 18 18 18 C C Y . n B 1 19 U 19 19 19 U U Y . n B 1 20 G 20 20 20 G G Y . n B 1 21 A 21 21 21 A A Y . n B 1 22 G 22 22 22 G G Y . n B 1 23 G 23 23 23 G G Y . n B 1 24 A 24 24 24 A A Y . n B 1 25 G 25 25 25 G G Y . n B 1 26 G 26 26 26 G G Y . n B 1 27 U 27 27 27 U U Y . n B 1 28 C 28 28 28 C C Y . n B 1 29 A 29 29 29 A A Y . n B 1 30 C 30 30 30 C C Y . n B 1 31 U 31 31 31 U U Y . n B 1 32 G 32 32 32 G G Y . n B 1 33 C 33 33 33 C C Y . n B 1 34 G 34 34 34 G G Y . n B 1 35 C 35 35 35 C C Y . n B 1 36 C 36 36 36 C C Y . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IR 1 101 1 IR IR E . D 3 K 1 102 4 K K E . E 3 K 1 103 22 K K E . F 4 MG 1 104 1 MG MG E . G 4 MG 1 105 2 MG MG E . H 5 DMS 1 106 1 DMS DMS E . I 2 IR 1 101 2 IR IR Y . J 3 K 1 102 3 K K Y . K 3 K 1 103 23 K K Y . L 6 747 1 104 1 747 SQ3 Y . M 7 HOH 1 201 9 HOH HOH E . M 7 HOH 2 202 5 HOH HOH E . M 7 HOH 3 203 8 HOH HOH E . M 7 HOH 4 204 12 HOH HOH E . M 7 HOH 5 205 13 HOH HOH E . M 7 HOH 6 206 4 HOH HOH E . M 7 HOH 7 207 7 HOH HOH E . M 7 HOH 8 208 11 HOH HOH E . N 7 HOH 1 201 1 HOH HOH Y . N 7 HOH 2 202 10 HOH HOH Y . N 7 HOH 3 203 6 HOH HOH Y . N 7 HOH 4 204 3 HOH HOH Y . N 7 HOH 5 205 2 HOH HOH Y . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0103 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # _cell.entry_id 5BJP _cell.length_a 36.642 _cell.length_b 55.438 _cell.length_c 98.676 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BJP _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5BJP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '32.5% PEG 550 MME, 0.1 M Tris-HCl pH 8.05' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-04-21 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1050 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.1050 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5BJP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6468 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.6 _reflns.pdbx_Rmerge_I_obs 0.130 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5BJP _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6468 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.34 _refine.ls_d_res_high 2.51 _refine.ls_percent_reflns_obs 98.68 _refine.ls_R_factor_obs 0.19547 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19067 _refine.ls_R_factor_R_free 0.23902 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 720 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 43.160 _refine.aniso_B[1][1] -1.06 _refine.aniso_B[2][2] 0.39 _refine.aniso_B[3][3] 0.66 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 3.536 _refine.pdbx_overall_ESU_R_Free 0.312 _refine.overall_SU_ML 0.212 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.857 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1564 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 1609 _refine_hist.d_res_high 2.51 _refine_hist.d_res_low 49.34 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.011 ? 1778 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.020 ? 727 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.878 1.275 ? 2773 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.894 3.000 ? 1748 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.091 0.200 ? 289 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.019 0.020 ? 926 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 410 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.717 4.571 ? 1778 'X-RAY DIFFRACTION' ? r_scbond_other 3.713 4.571 ? 1778 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 5.090 6.862 ? 2774 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.920 44.463 ? 8845 'X-RAY DIFFRACTION' ? r_long_range_B_other 7.921 44.461 ? 8846 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.514 _refine_ls_shell.d_res_low 2.579 _refine_ls_shell.number_reflns_R_work 420 _refine_ls_shell.R_factor_R_work 0.358 _refine_ls_shell.percent_reflns_obs 88.57 _refine_ls_shell.R_factor_R_free 0.367 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5BJP _struct.title 'Crystal structure of the Corn RNA aptamer in complex with DFHO, iridium hexammine soak' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5BJP _struct_keywords.text 'aptamer, fluorogenic RNA, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 6 ? M N N 7 ? N N N 7 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5BJP _struct_ref.pdbx_db_accession 5BJP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5BJP E 1 ? 36 ? 5BJP 1 ? 36 ? 1 36 2 1 5BJP Y 1 ? 36 ? 5BJP 1 ? 36 ? 1 36 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2660 ? 1 MORE -16 ? 1 'SSA (A^2)' 10810 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 8 O6 ? ? ? 1_555 G MG . MG ? ? E G 8 E MG 105 1_555 ? ? ? ? ? ? ? 2.555 ? ? metalc2 metalc ? ? A G 12 O6 ? ? ? 1_555 E K . K ? ? E G 12 E K 103 1_555 ? ? ? ? ? ? ? 2.731 ? ? metalc3 metalc ? ? A G 13 O6 ? ? ? 1_555 D K . K ? ? E G 13 E K 102 1_555 ? ? ? ? ? ? ? 3.114 ? ? metalc4 metalc ? ? A G 13 O6 ? ? ? 1_555 E K . K ? ? E G 13 E K 103 1_555 ? ? ? ? ? ? ? 2.894 ? ? metalc5 metalc ? ? A G 15 O6 ? ? ? 1_555 E K . K ? ? E G 15 E K 103 1_555 ? ? ? ? ? ? ? 2.576 ? ? metalc6 metalc ? ? A G 16 O6 ? ? ? 1_555 D K . K ? ? E G 16 E K 102 1_555 ? ? ? ? ? ? ? 2.707 ? ? metalc7 metalc ? ? A G 16 O6 ? ? ? 1_555 E K . K ? ? E G 16 E K 103 1_555 ? ? ? ? ? ? ? 2.923 ? ? metalc8 metalc ? ? A U 17 O2 ? ? ? 1_555 D K . K ? ? E U 17 E K 102 1_555 ? ? ? ? ? ? ? 3.135 ? ? metalc9 metalc ? ? A G 22 O6 ? ? ? 1_555 E K . K ? ? E G 22 E K 103 1_555 ? ? ? ? ? ? ? 2.669 ? ? metalc10 metalc ? ? A G 23 O6 ? ? ? 1_555 D K . K ? ? E G 23 E K 102 1_555 ? ? ? ? ? ? ? 2.883 ? ? metalc11 metalc ? ? A G 23 O6 ? ? ? 1_555 E K . K ? ? E G 23 E K 103 1_555 ? ? ? ? ? ? ? 3.050 ? ? metalc12 metalc ? ? A G 25 O6 ? ? ? 1_555 E K . K ? ? E G 25 E K 103 1_555 ? ? ? ? ? ? ? 2.657 ? ? metalc13 metalc ? ? A G 26 O6 ? ? ? 1_555 D K . K ? ? E G 26 E K 102 1_555 ? ? ? ? ? ? ? 2.946 ? ? metalc14 metalc ? ? A G 26 O6 ? ? ? 1_555 E K . K ? ? E G 26 E K 103 1_555 ? ? ? ? ? ? ? 3.023 ? ? metalc15 metalc ? ? D K . K ? ? ? 1_555 M HOH . O ? ? E K 102 E HOH 202 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc16 metalc ? ? D K . K ? ? ? 1_555 M HOH . O ? ? E K 102 E HOH 204 1_555 ? ? ? ? ? ? ? 2.917 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? E MG 104 E HOH 207 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc18 metalc ? ? B G 12 O6 ? ? ? 1_555 J K . K ? ? Y G 12 Y K 102 1_555 ? ? ? ? ? ? ? 2.786 ? ? metalc19 metalc ? ? B G 13 O6 ? ? ? 1_555 J K . K ? ? Y G 13 Y K 102 1_555 ? ? ? ? ? ? ? 3.002 ? ? metalc20 metalc ? ? B G 13 O6 ? ? ? 1_555 K K . K ? ? Y G 13 Y K 103 1_555 ? ? ? ? ? ? ? 3.112 ? ? metalc21 metalc ? ? B G 15 O6 ? ? ? 1_555 J K . K ? ? Y G 15 Y K 102 1_555 ? ? ? ? ? ? ? 2.711 ? ? metalc22 metalc ? ? B G 16 O6 ? ? ? 1_555 J K . K ? ? Y G 16 Y K 102 1_555 ? ? ? ? ? ? ? 2.846 ? ? metalc23 metalc ? ? B G 16 O6 ? ? ? 1_555 K K . K ? ? Y G 16 Y K 103 1_555 ? ? ? ? ? ? ? 2.817 ? ? metalc24 metalc ? ? B U 17 O2 ? ? ? 1_555 K K . K ? ? Y U 17 Y K 103 1_555 ? ? ? ? ? ? ? 3.040 ? ? metalc25 metalc ? ? B G 22 O6 ? ? ? 1_555 J K . K ? ? Y G 22 Y K 102 1_555 ? ? ? ? ? ? ? 2.735 ? ? metalc26 metalc ? ? B G 23 O6 ? ? ? 1_555 J K . K ? ? Y G 23 Y K 102 1_555 ? ? ? ? ? ? ? 2.929 ? ? metalc27 metalc ? ? B G 23 O6 ? ? ? 1_555 K K . K ? ? Y G 23 Y K 103 1_555 ? ? ? ? ? ? ? 2.749 ? ? metalc28 metalc ? ? B G 25 O6 ? ? ? 1_555 J K . K ? ? Y G 25 Y K 102 1_555 ? ? ? ? ? ? ? 2.767 ? ? metalc29 metalc ? ? B G 26 O6 ? ? ? 1_555 J K . K ? ? Y G 26 Y K 102 1_555 ? ? ? ? ? ? ? 3.121 ? ? metalc30 metalc ? ? B G 26 O6 ? ? ? 1_555 K K . K ? ? Y G 26 Y K 103 1_555 ? ? ? ? ? ? ? 2.878 ? ? metalc31 metalc ? ? K K . K ? ? ? 1_555 N HOH . O ? ? Y K 103 Y HOH 203 1_555 ? ? ? ? ? ? ? 2.876 ? ? metalc32 metalc ? ? K K . K ? ? ? 1_555 N HOH . O ? ? Y K 103 Y HOH 205 1_555 ? ? ? ? ? ? ? 2.963 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 36 N3 ? ? E G 1 E C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 36 O2 ? ? E G 1 E C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 36 N4 ? ? E G 1 E C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 35 N3 ? ? E G 2 E C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 35 O2 ? ? E G 2 E C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 35 N4 ? ? E G 2 E C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 34 N1 ? ? E C 3 E G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 34 O6 ? ? E C 3 E G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 34 N2 ? ? E C 3 E G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 33 N3 ? ? E G 4 E C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 33 O2 ? ? E G 4 E C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 33 N4 ? ? E G 4 E C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 32 N1 ? ? E C 5 E G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 32 O6 ? ? E C 5 E G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 32 N2 ? ? E C 5 E G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 18 N3 ? ? E G 9 E C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 18 O2 ? ? E G 9 E C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 18 N4 ? ? E G 9 E C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 N2 ? ? ? 1_555 A U 27 O2 ? ? E G 9 E U 27 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog20 hydrog ? ? A G 12 N1 ? ? ? 1_555 A G 15 O6 ? ? E G 12 E G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A G 12 N2 ? ? ? 1_555 A G 15 N7 ? ? E G 12 E G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A G 12 N7 ? ? ? 1_555 A G 25 N2 ? ? E G 12 E G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A G 12 O6 ? ? ? 1_555 A G 25 N1 ? ? E G 12 E G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 16 O6 ? ? E G 13 E G 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 13 N2 ? ? ? 1_555 A G 16 N7 ? ? E G 13 E G 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A G 13 N7 ? ? ? 1_555 A G 26 N2 ? ? E G 13 E G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A G 13 O6 ? ? ? 1_555 A G 26 N1 ? ? E G 13 E G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A G 15 N1 ? ? ? 1_555 A G 22 O6 ? ? E G 15 E G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A G 15 N2 ? ? ? 1_555 A G 22 N7 ? ? E G 15 E G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A G 16 N1 ? ? ? 1_555 A G 23 O6 ? ? E G 16 E G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A G 16 N2 ? ? ? 1_555 A G 23 N7 ? ? E G 16 E G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 20 N2 ? ? E C 18 E G 20 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog33 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 28 N3 ? ? E G 20 E C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 28 O2 ? ? E G 20 E C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 28 N4 ? ? E G 20 E C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 27 O4 ? ? E A 21 E U 27 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog37 hydrog ? ? A G 22 N1 ? ? ? 1_555 A G 25 O6 ? ? E G 22 E G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? A G 22 N2 ? ? ? 1_555 A G 25 N7 ? ? E G 22 E G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? A G 23 N1 ? ? ? 1_555 A G 26 O6 ? ? E G 23 E G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? A G 23 N2 ? ? ? 1_555 A G 26 N7 ? ? E G 23 E G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? A G 25 O6 ? ? ? 1_555 B A 11 N6 ? ? E G 25 Y A 11 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog42 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 36 N3 ? ? Y G 1 Y C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 36 O2 ? ? Y G 1 Y C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 36 N4 ? ? Y G 1 Y C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 35 N3 ? ? Y G 2 Y C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 35 O2 ? ? Y G 2 Y C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 35 N4 ? ? Y G 2 Y C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 34 N1 ? ? Y C 3 Y G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 34 O6 ? ? Y C 3 Y G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 34 N2 ? ? Y C 3 Y G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 33 N3 ? ? Y G 4 Y C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 33 O2 ? ? Y G 4 Y C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 33 N4 ? ? Y G 4 Y C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 32 N1 ? ? Y C 5 Y G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 32 O6 ? ? Y C 5 Y G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 32 N2 ? ? Y C 5 Y G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 18 N3 ? ? Y G 9 Y C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 18 O2 ? ? Y G 9 Y C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 18 N4 ? ? Y G 9 Y C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B G 12 N2 ? ? ? 1_555 B A 14 N7 ? ? Y G 12 Y A 14 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog61 hydrog ? ? B G 12 N3 ? ? ? 1_555 B A 14 N6 ? ? Y G 12 Y A 14 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog62 hydrog ? ? B G 12 N1 ? ? ? 1_555 B G 15 O6 ? ? Y G 12 Y G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog63 hydrog ? ? B G 12 N2 ? ? ? 1_555 B G 15 N7 ? ? Y G 12 Y G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog64 hydrog ? ? B G 12 N7 ? ? ? 1_555 B G 25 N2 ? ? Y G 12 Y G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog65 hydrog ? ? B G 12 O6 ? ? ? 1_555 B G 25 N1 ? ? Y G 12 Y G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog66 hydrog ? ? B G 13 N1 ? ? ? 1_555 B G 16 O6 ? ? Y G 13 Y G 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog67 hydrog ? ? B G 13 N2 ? ? ? 1_555 B G 16 N7 ? ? Y G 13 Y G 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog68 hydrog ? ? B G 13 N7 ? ? ? 1_555 B G 26 N2 ? ? Y G 13 Y G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog69 hydrog ? ? B G 13 O6 ? ? ? 1_555 B G 26 N1 ? ? Y G 13 Y G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog70 hydrog ? ? B G 15 N1 ? ? ? 1_555 B G 22 O6 ? ? Y G 15 Y G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog71 hydrog ? ? B G 15 N2 ? ? ? 1_555 B G 22 N7 ? ? Y G 15 Y G 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog72 hydrog ? ? B G 16 N1 ? ? ? 1_555 B G 23 O6 ? ? Y G 16 Y G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog73 hydrog ? ? B G 16 N2 ? ? ? 1_555 B G 23 N7 ? ? Y G 16 Y G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog74 hydrog ? ? B C 18 O2 ? ? ? 1_555 B G 20 N2 ? ? Y C 18 Y G 20 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog75 hydrog ? ? B G 20 N1 ? ? ? 1_555 B C 28 N3 ? ? Y G 20 Y C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B G 20 N2 ? ? ? 1_555 B C 28 O2 ? ? Y G 20 Y C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B G 20 O6 ? ? ? 1_555 B C 28 N4 ? ? Y G 20 Y C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B A 21 N6 ? ? ? 1_555 B U 27 O4 ? ? Y A 21 Y U 27 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog79 hydrog ? ? B G 22 N1 ? ? ? 1_555 B G 25 O6 ? ? Y G 22 Y G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog80 hydrog ? ? B G 22 N2 ? ? ? 1_555 B G 25 N7 ? ? Y G 22 Y G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog81 hydrog ? ? B G 23 N1 ? ? ? 1_555 B G 26 O6 ? ? Y G 23 Y G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog82 hydrog ? ? B G 23 N2 ? ? ? 1_555 B G 26 N7 ? ? Y G 23 Y G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 12 ? E G 12 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 13 ? E G 13 ? 1_555 78.1 ? 2 O6 ? A G 12 ? E G 12 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 15 ? E G 15 ? 1_555 79.7 ? 3 O6 ? A G 13 ? E G 13 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 15 ? E G 15 ? 1_555 81.9 ? 4 O6 ? A G 12 ? E G 12 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 16 ? E G 16 ? 1_555 137.4 ? 5 O6 ? A G 13 ? E G 13 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 16 ? E G 16 ? 1_555 68.8 ? 6 O6 ? A G 15 ? E G 15 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 16 ? E G 16 ? 1_555 70.0 ? 7 O6 ? A G 12 ? E G 12 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 22 ? E G 22 ? 1_555 119.7 ? 8 O6 ? A G 13 ? E G 13 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 22 ? E G 22 ? 1_555 149.8 ? 9 O6 ? A G 15 ? E G 15 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 22 ? E G 22 ? 1_555 78.2 ? 10 O6 ? A G 16 ? E G 16 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 22 ? E G 22 ? 1_555 83.1 ? 11 O6 ? A G 12 ? E G 12 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 23 ? E G 23 ? 1_555 153.5 ? 12 O6 ? A G 13 ? E G 13 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 23 ? E G 23 ? 1_555 106.5 ? 13 O6 ? A G 15 ? E G 15 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 23 ? E G 23 ? 1_555 126.6 ? 14 O6 ? A G 16 ? E G 16 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 23 ? E G 23 ? 1_555 65.2 ? 15 O6 ? A G 22 ? E G 22 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 23 ? E G 23 ? 1_555 69.2 ? 16 O6 ? A G 12 ? E G 12 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 25 ? E G 25 ? 1_555 75.2 ? 17 O6 ? A G 13 ? E G 13 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 25 ? E G 25 ? 1_555 130.6 ? 18 O6 ? A G 15 ? E G 15 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 25 ? E G 25 ? 1_555 131.5 ? 19 O6 ? A G 16 ? E G 16 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 25 ? E G 25 ? 1_555 147.3 ? 20 O6 ? A G 22 ? E G 22 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 25 ? E G 25 ? 1_555 79.3 ? 21 O6 ? A G 23 ? E G 23 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 25 ? E G 25 ? 1_555 82.8 ? 22 O6 ? A G 12 ? E G 12 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 26 ? E G 26 ? 1_555 91.7 ? 23 O6 ? A G 13 ? E G 13 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 26 ? E G 26 ? 1_555 67.7 ? 24 O6 ? A G 15 ? E G 15 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 26 ? E G 26 ? 1_555 149.6 ? 25 O6 ? A G 16 ? E G 16 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 26 ? E G 26 ? 1_555 99.5 ? 26 O6 ? A G 22 ? E G 22 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 26 ? E G 26 ? 1_555 130.2 ? 27 O6 ? A G 23 ? E G 23 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 26 ? E G 26 ? 1_555 67.4 ? 28 O6 ? A G 25 ? E G 25 ? 1_555 K ? E K . ? E K 103 ? 1_555 O6 ? A G 26 ? E G 26 ? 1_555 72.3 ? 29 O6 ? A G 13 ? E G 13 ? 1_555 K ? D K . ? E K 102 ? 1_555 O6 ? A G 16 ? E G 16 ? 1_555 68.3 ? 30 O6 ? A G 13 ? E G 13 ? 1_555 K ? D K . ? E K 102 ? 1_555 O2 ? A U 17 ? E U 17 ? 1_555 129.1 ? 31 O6 ? A G 16 ? E G 16 ? 1_555 K ? D K . ? E K 102 ? 1_555 O2 ? A U 17 ? E U 17 ? 1_555 72.8 ? 32 O6 ? A G 13 ? E G 13 ? 1_555 K ? D K . ? E K 102 ? 1_555 O6 ? A G 23 ? E G 23 ? 1_555 105.1 ? 33 O6 ? A G 16 ? E G 16 ? 1_555 K ? D K . ? E K 102 ? 1_555 O6 ? A G 23 ? E G 23 ? 1_555 70.3 ? 34 O2 ? A U 17 ? E U 17 ? 1_555 K ? D K . ? E K 102 ? 1_555 O6 ? A G 23 ? E G 23 ? 1_555 90.8 ? 35 O6 ? A G 13 ? E G 13 ? 1_555 K ? D K . ? E K 102 ? 1_555 O6 ? A G 26 ? E G 26 ? 1_555 65.9 ? 36 O6 ? A G 16 ? E G 16 ? 1_555 K ? D K . ? E K 102 ? 1_555 O6 ? A G 26 ? E G 26 ? 1_555 106.7 ? 37 O2 ? A U 17 ? E U 17 ? 1_555 K ? D K . ? E K 102 ? 1_555 O6 ? A G 26 ? E G 26 ? 1_555 159.8 ? 38 O6 ? A G 23 ? E G 23 ? 1_555 K ? D K . ? E K 102 ? 1_555 O6 ? A G 26 ? E G 26 ? 1_555 70.6 ? 39 O6 ? A G 13 ? E G 13 ? 1_555 K ? D K . ? E K 102 ? 1_555 O ? M HOH . ? E HOH 202 ? 1_555 137.8 ? 40 O6 ? A G 16 ? E G 16 ? 1_555 K ? D K . ? E K 102 ? 1_555 O ? M HOH . ? E HOH 202 ? 1_555 153.3 ? 41 O2 ? A U 17 ? E U 17 ? 1_555 K ? D K . ? E K 102 ? 1_555 O ? M HOH . ? E HOH 202 ? 1_555 87.4 ? 42 O6 ? A G 23 ? E G 23 ? 1_555 K ? D K . ? E K 102 ? 1_555 O ? M HOH . ? E HOH 202 ? 1_555 92.9 ? 43 O6 ? A G 26 ? E G 26 ? 1_555 K ? D K . ? E K 102 ? 1_555 O ? M HOH . ? E HOH 202 ? 1_555 85.7 ? 44 O6 ? A G 13 ? E G 13 ? 1_555 K ? D K . ? E K 102 ? 1_555 O ? M HOH . ? E HOH 204 ? 1_555 80.0 ? 45 O6 ? A G 16 ? E G 16 ? 1_555 K ? D K . ? E K 102 ? 1_555 O ? M HOH . ? E HOH 204 ? 1_555 97.6 ? 46 O2 ? A U 17 ? E U 17 ? 1_555 K ? D K . ? E K 102 ? 1_555 O ? M HOH . ? E HOH 204 ? 1_555 73.9 ? 47 O6 ? A G 23 ? E G 23 ? 1_555 K ? D K . ? E K 102 ? 1_555 O ? M HOH . ? E HOH 204 ? 1_555 163.0 ? 48 O6 ? A G 26 ? E G 26 ? 1_555 K ? D K . ? E K 102 ? 1_555 O ? M HOH . ? E HOH 204 ? 1_555 125.5 ? 49 O ? M HOH . ? E HOH 202 ? 1_555 K ? D K . ? E K 102 ? 1_555 O ? M HOH . ? E HOH 204 ? 1_555 93.7 ? 50 O6 ? B G 12 ? Y G 12 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 13 ? Y G 13 ? 1_555 75.3 ? 51 O6 ? B G 12 ? Y G 12 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 15 ? Y G 15 ? 1_555 78.5 ? 52 O6 ? B G 13 ? Y G 13 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 15 ? Y G 15 ? 1_555 88.8 ? 53 O6 ? B G 12 ? Y G 12 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 16 ? Y G 16 ? 1_555 137.8 ? 54 O6 ? B G 13 ? Y G 13 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 16 ? Y G 16 ? 1_555 75.5 ? 55 O6 ? B G 15 ? Y G 15 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 16 ? Y G 16 ? 1_555 71.1 ? 56 O6 ? B G 12 ? Y G 12 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 22 ? Y G 22 ? 1_555 117.0 ? 57 O6 ? B G 13 ? Y G 13 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 22 ? Y G 22 ? 1_555 157.6 ? 58 O6 ? B G 15 ? Y G 15 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 22 ? Y G 22 ? 1_555 76.4 ? 59 O6 ? B G 16 ? Y G 16 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 22 ? Y G 22 ? 1_555 83.8 ? 60 O6 ? B G 12 ? Y G 12 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 23 ? Y G 23 ? 1_555 151.8 ? 61 O6 ? B G 13 ? Y G 13 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 23 ? Y G 23 ? 1_555 106.5 ? 62 O6 ? B G 15 ? Y G 15 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 23 ? Y G 23 ? 1_555 129.3 ? 63 O6 ? B G 16 ? Y G 16 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 23 ? Y G 23 ? 1_555 67.0 ? 64 O6 ? B G 22 ? Y G 22 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 23 ? Y G 23 ? 1_555 72.0 ? 65 O6 ? B G 12 ? Y G 12 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 25 ? Y G 25 ? 1_555 74.3 ? 66 O6 ? B G 13 ? Y G 13 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 25 ? Y G 25 ? 1_555 126.5 ? 67 O6 ? B G 15 ? Y G 15 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 25 ? Y G 25 ? 1_555 125.8 ? 68 O6 ? B G 16 ? Y G 16 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 25 ? Y G 25 ? 1_555 147.9 ? 69 O6 ? B G 22 ? Y G 22 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 25 ? Y G 25 ? 1_555 75.8 ? 70 O6 ? B G 23 ? Y G 23 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 25 ? Y G 25 ? 1_555 83.1 ? 71 O6 ? B G 12 ? Y G 12 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 26 ? Y G 26 ? 1_555 89.6 ? 72 O6 ? B G 13 ? Y G 13 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 26 ? Y G 26 ? 1_555 62.7 ? 73 O6 ? B G 15 ? Y G 15 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 26 ? Y G 26 ? 1_555 151.2 ? 74 O6 ? B G 16 ? Y G 16 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 26 ? Y G 26 ? 1_555 103.2 ? 75 O6 ? B G 22 ? Y G 22 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 26 ? Y G 26 ? 1_555 132.0 ? 76 O6 ? B G 23 ? Y G 23 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 26 ? Y G 26 ? 1_555 67.8 ? 77 O6 ? B G 25 ? Y G 25 ? 1_555 K ? J K . ? Y K 102 ? 1_555 O6 ? B G 26 ? Y G 26 ? 1_555 74.2 ? 78 O6 ? B G 13 ? Y G 13 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O6 ? B G 16 ? Y G 16 ? 1_555 74.1 ? 79 O6 ? B G 13 ? Y G 13 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O2 ? B U 17 ? Y U 17 ? 1_555 126.6 ? 80 O6 ? B G 16 ? Y G 16 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O2 ? B U 17 ? Y U 17 ? 1_555 71.2 ? 81 O6 ? B G 13 ? Y G 13 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O6 ? B G 23 ? Y G 23 ? 1_555 108.2 ? 82 O6 ? B G 16 ? Y G 16 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O6 ? B G 23 ? Y G 23 ? 1_555 69.8 ? 83 O2 ? B U 17 ? Y U 17 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O6 ? B G 23 ? Y G 23 ? 1_555 96.5 ? 84 O6 ? B G 13 ? Y G 13 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O6 ? B G 26 ? Y G 26 ? 1_555 64.1 ? 85 O6 ? B G 16 ? Y G 16 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O6 ? B G 26 ? Y G 26 ? 1_555 110.5 ? 86 O2 ? B U 17 ? Y U 17 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O6 ? B G 26 ? Y G 26 ? 1_555 168.1 ? 87 O6 ? B G 23 ? Y G 23 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O6 ? B G 26 ? Y G 26 ? 1_555 73.8 ? 88 O6 ? B G 13 ? Y G 13 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O ? N HOH . ? Y HOH 203 ? 1_555 134.1 ? 89 O6 ? B G 16 ? Y G 16 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O ? N HOH . ? Y HOH 203 ? 1_555 150.9 ? 90 O2 ? B U 17 ? Y U 17 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O ? N HOH . ? Y HOH 203 ? 1_555 83.0 ? 91 O6 ? B G 23 ? Y G 23 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O ? N HOH . ? Y HOH 203 ? 1_555 100.9 ? 92 O6 ? B G 26 ? Y G 26 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O ? N HOH . ? Y HOH 203 ? 1_555 92.1 ? 93 O6 ? B G 13 ? Y G 13 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O ? N HOH . ? Y HOH 205 ? 1_555 72.4 ? 94 O6 ? B G 16 ? Y G 16 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O ? N HOH . ? Y HOH 205 ? 1_555 91.9 ? 95 O2 ? B U 17 ? Y U 17 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O ? N HOH . ? Y HOH 205 ? 1_555 69.5 ? 96 O6 ? B G 23 ? Y G 23 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O ? N HOH . ? Y HOH 205 ? 1_555 160.2 ? 97 O6 ? B G 26 ? Y G 26 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O ? N HOH . ? Y HOH 205 ? 1_555 121.6 ? 98 O ? N HOH . ? Y HOH 203 ? 1_555 K ? K K . ? Y K 103 ? 1_555 O ? N HOH . ? Y HOH 205 ? 1_555 91.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software E IR 101 ? 1 'binding site for residue IR E 101' AC2 Software E K 102 ? 8 'binding site for residue K E 102' AC3 Software E K 103 ? 9 'binding site for residue K E 103' AC4 Software E MG 104 ? 1 'binding site for residue MG E 104' AC5 Software E MG 105 ? 1 'binding site for residue MG E 105' AC6 Software E DMS 106 ? 3 'binding site for residue DMS E 106' AC7 Software Y K 102 ? 9 'binding site for residue K Y 102' AC8 Software Y K 103 ? 8 'binding site for residue K Y 103' AC9 Software Y 747 104 ? 11 'binding site for residue 747 Y 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 U A 19 ? U E 19 . ? 1_555 ? 2 AC2 8 G A 13 ? G E 13 . ? 1_555 ? 3 AC2 8 G A 16 ? G E 16 . ? 1_555 ? 4 AC2 8 U A 17 ? U E 17 . ? 1_555 ? 5 AC2 8 G A 23 ? G E 23 . ? 1_555 ? 6 AC2 8 G A 26 ? G E 26 . ? 1_555 ? 7 AC2 8 K E . ? K E 103 . ? 1_555 ? 8 AC2 8 HOH M . ? HOH E 202 . ? 1_555 ? 9 AC2 8 HOH M . ? HOH E 204 . ? 1_555 ? 10 AC3 9 G A 12 ? G E 12 . ? 1_555 ? 11 AC3 9 G A 13 ? G E 13 . ? 1_555 ? 12 AC3 9 G A 15 ? G E 15 . ? 1_555 ? 13 AC3 9 G A 16 ? G E 16 . ? 1_555 ? 14 AC3 9 G A 22 ? G E 22 . ? 1_555 ? 15 AC3 9 G A 23 ? G E 23 . ? 1_555 ? 16 AC3 9 G A 25 ? G E 25 . ? 1_555 ? 17 AC3 9 G A 26 ? G E 26 . ? 1_555 ? 18 AC3 9 K D . ? K E 102 . ? 1_555 ? 19 AC4 1 HOH M . ? HOH E 207 . ? 1_555 ? 20 AC5 1 G A 8 ? G E 8 . ? 1_555 ? 21 AC6 3 U A 19 ? U E 19 . ? 1_555 ? 22 AC6 3 A B 7 ? A Y 7 . ? 3_553 ? 23 AC6 3 G B 8 ? G Y 8 . ? 3_553 ? 24 AC7 9 G B 12 ? G Y 12 . ? 1_555 ? 25 AC7 9 G B 13 ? G Y 13 . ? 1_555 ? 26 AC7 9 G B 15 ? G Y 15 . ? 1_555 ? 27 AC7 9 G B 16 ? G Y 16 . ? 1_555 ? 28 AC7 9 G B 22 ? G Y 22 . ? 1_555 ? 29 AC7 9 G B 23 ? G Y 23 . ? 1_555 ? 30 AC7 9 G B 25 ? G Y 25 . ? 1_555 ? 31 AC7 9 G B 26 ? G Y 26 . ? 1_555 ? 32 AC7 9 K K . ? K Y 103 . ? 1_555 ? 33 AC8 8 G B 13 ? G Y 13 . ? 1_555 ? 34 AC8 8 G B 16 ? G Y 16 . ? 1_555 ? 35 AC8 8 U B 17 ? U Y 17 . ? 1_555 ? 36 AC8 8 G B 23 ? G Y 23 . ? 1_555 ? 37 AC8 8 G B 26 ? G Y 26 . ? 1_555 ? 38 AC8 8 K J . ? K Y 102 . ? 1_555 ? 39 AC8 8 HOH N . ? HOH Y 203 . ? 1_555 ? 40 AC8 8 HOH N . ? HOH Y 205 . ? 1_555 ? 41 AC9 11 G A 12 ? G E 12 . ? 1_555 ? 42 AC9 11 A A 14 ? A E 14 . ? 1_555 ? 43 AC9 11 G A 25 ? G E 25 . ? 1_555 ? 44 AC9 11 HOH M . ? HOH E 203 . ? 1_555 ? 45 AC9 11 A B 11 ? A Y 11 . ? 1_555 ? 46 AC9 11 G B 12 ? G Y 12 . ? 1_555 ? 47 AC9 11 G B 15 ? G Y 15 . ? 1_555 ? 48 AC9 11 G B 22 ? G Y 22 . ? 1_555 ? 49 AC9 11 A B 24 ? A Y 24 . ? 1_555 ? 50 AC9 11 G B 25 ? G Y 25 . ? 1_555 ? 51 AC9 11 HOH N . ? HOH Y 202 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 E _pdbx_validate_rmsd_bond.auth_comp_id_1 A _pdbx_validate_rmsd_bond.auth_seq_id_1 11 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 E _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 12 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.533 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.074 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" E C 3 ? ? P E C 3 ? ? OP2 E C 3 ? ? 100.25 105.70 -5.45 0.90 N 2 1 "O4'" E A 21 ? ? "C1'" E A 21 ? ? N9 E A 21 ? ? 112.75 108.50 4.25 0.70 N 3 1 "O5'" Y A 11 ? ? P Y A 11 ? ? OP2 Y A 11 ? ? 99.11 105.70 -6.59 0.90 N 4 1 "O4'" Y G 12 ? ? "C1'" Y G 12 ? ? N9 Y G 12 ? ? 114.73 108.50 6.23 0.70 N 5 1 "C4'" Y A 14 ? ? "C3'" Y A 14 ? ? "O3'" Y A 14 ? ? 96.67 109.40 -12.73 2.10 N 6 1 "C3'" Y A 14 ? ? "O3'" Y A 14 ? ? P Y G 15 ? ? 126.98 119.70 7.28 1.20 Y 7 1 "O5'" Y G 20 ? ? P Y G 20 ? ? OP1 Y G 20 ? ? 100.14 105.70 -5.56 0.90 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id Y _pdbx_validate_planes.auth_seq_id 12 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.053 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 747 F1 F N N 1 747 C2 C Y N 2 747 C1 C Y N 3 747 O1 O N N 4 747 C3 C Y N 5 747 C4 C Y N 6 747 C5 C Y N 7 747 C C Y N 8 747 F F N N 9 747 C6 C N N 10 747 C7 C N N 11 747 C10 C N N 12 747 C12 C N N 13 747 N13 N N N 14 747 O14 O N N 15 747 N15 N N N 16 747 C16 C N N 17 747 C17 C N N 18 747 N18 N N N 19 747 O19 O N N 20 747 H1 H N N 21 747 H2 H N N 22 747 H3 H N N 23 747 H4 H N N 24 747 H5 H N N 25 747 H6 H N N 26 747 H7 H N N 27 747 H8 H N N 28 747 H9 H N N 29 A OP3 O N N 30 A P P N N 31 A OP1 O N N 32 A OP2 O N N 33 A "O5'" O N N 34 A "C5'" C N N 35 A "C4'" C N R 36 A "O4'" O N N 37 A "C3'" C N S 38 A "O3'" O N N 39 A "C2'" C N R 40 A "O2'" O N N 41 A "C1'" C N R 42 A N9 N Y N 43 A C8 C Y N 44 A N7 N Y N 45 A C5 C Y N 46 A C6 C Y N 47 A N6 N N N 48 A N1 N Y N 49 A C2 C Y N 50 A N3 N Y N 51 A C4 C Y N 52 A HOP3 H N N 53 A HOP2 H N N 54 A "H5'" H N N 55 A "H5''" H N N 56 A "H4'" H N N 57 A "H3'" H N N 58 A "HO3'" H N N 59 A "H2'" H N N 60 A "HO2'" H N N 61 A "H1'" H N N 62 A H8 H N N 63 A H61 H N N 64 A H62 H N N 65 A H2 H N N 66 C OP3 O N N 67 C P P N N 68 C OP1 O N N 69 C OP2 O N N 70 C "O5'" O N N 71 C "C5'" C N N 72 C "C4'" C N R 73 C "O4'" O N N 74 C "C3'" C N S 75 C "O3'" O N N 76 C "C2'" C N R 77 C "O2'" O N N 78 C "C1'" C N R 79 C N1 N N N 80 C C2 C N N 81 C O2 O N N 82 C N3 N N N 83 C C4 C N N 84 C N4 N N N 85 C C5 C N N 86 C C6 C N N 87 C HOP3 H N N 88 C HOP2 H N N 89 C "H5'" H N N 90 C "H5''" H N N 91 C "H4'" H N N 92 C "H3'" H N N 93 C "HO3'" H N N 94 C "H2'" H N N 95 C "HO2'" H N N 96 C "H1'" H N N 97 C H41 H N N 98 C H42 H N N 99 C H5 H N N 100 C H6 H N N 101 DMS S S N N 102 DMS O O N N 103 DMS C1 C N N 104 DMS C2 C N N 105 DMS H11 H N N 106 DMS H12 H N N 107 DMS H13 H N N 108 DMS H21 H N N 109 DMS H22 H N N 110 DMS H23 H N N 111 G OP3 O N N 112 G P P N N 113 G OP1 O N N 114 G OP2 O N N 115 G "O5'" O N N 116 G "C5'" C N N 117 G "C4'" C N R 118 G "O4'" O N N 119 G "C3'" C N S 120 G "O3'" O N N 121 G "C2'" C N R 122 G "O2'" O N N 123 G "C1'" C N R 124 G N9 N Y N 125 G C8 C Y N 126 G N7 N Y N 127 G C5 C Y N 128 G C6 C N N 129 G O6 O N N 130 G N1 N N N 131 G C2 C N N 132 G N2 N N N 133 G N3 N N N 134 G C4 C Y N 135 G HOP3 H N N 136 G HOP2 H N N 137 G "H5'" H N N 138 G "H5''" H N N 139 G "H4'" H N N 140 G "H3'" H N N 141 G "HO3'" H N N 142 G "H2'" H N N 143 G "HO2'" H N N 144 G "H1'" H N N 145 G H8 H N N 146 G H1 H N N 147 G H21 H N N 148 G H22 H N N 149 HOH O O N N 150 HOH H1 H N N 151 HOH H2 H N N 152 IR IR IR N N 153 K K K N N 154 MG MG MG N N 155 U OP3 O N N 156 U P P N N 157 U OP1 O N N 158 U OP2 O N N 159 U "O5'" O N N 160 U "C5'" C N N 161 U "C4'" C N R 162 U "O4'" O N N 163 U "C3'" C N S 164 U "O3'" O N N 165 U "C2'" C N R 166 U "O2'" O N N 167 U "C1'" C N R 168 U N1 N N N 169 U C2 C N N 170 U O2 O N N 171 U N3 N N N 172 U C4 C N N 173 U O4 O N N 174 U C5 C N N 175 U C6 C N N 176 U HOP3 H N N 177 U HOP2 H N N 178 U "H5'" H N N 179 U "H5''" H N N 180 U "H4'" H N N 181 U "H3'" H N N 182 U "HO3'" H N N 183 U "H2'" H N N 184 U "HO2'" H N N 185 U "H1'" H N N 186 U H3 H N N 187 U H5 H N N 188 U H6 H N N 189 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 747 F C sing N N 1 747 O19 N18 sing N N 2 747 O1 C1 sing N N 3 747 C C1 doub Y N 4 747 C C5 sing Y N 5 747 C17 N18 doub N E 6 747 C17 C12 sing N N 7 747 C1 C2 sing Y N 8 747 C5 C4 doub Y N 9 747 N13 C12 doub N N 10 747 N13 C7 sing N N 11 747 C12 N15 sing N N 12 747 C2 F1 sing N N 13 747 C2 C3 doub Y N 14 747 C4 C3 sing Y N 15 747 C4 C6 sing N N 16 747 N15 C16 sing N N 17 747 N15 C10 sing N N 18 747 C7 C6 doub N Z 19 747 C7 C10 sing N N 20 747 C10 O14 doub N N 21 747 O1 H1 sing N N 22 747 C3 H2 sing N N 23 747 C5 H3 sing N N 24 747 C6 H4 sing N N 25 747 C16 H5 sing N N 26 747 C16 H6 sing N N 27 747 C16 H7 sing N N 28 747 C17 H8 sing N N 29 747 O19 H9 sing N N 30 A OP3 P sing N N 31 A OP3 HOP3 sing N N 32 A P OP1 doub N N 33 A P OP2 sing N N 34 A P "O5'" sing N N 35 A OP2 HOP2 sing N N 36 A "O5'" "C5'" sing N N 37 A "C5'" "C4'" sing N N 38 A "C5'" "H5'" sing N N 39 A "C5'" "H5''" sing N N 40 A "C4'" "O4'" sing N N 41 A "C4'" "C3'" sing N N 42 A "C4'" "H4'" sing N N 43 A "O4'" "C1'" sing N N 44 A "C3'" "O3'" sing N N 45 A "C3'" "C2'" sing N N 46 A "C3'" "H3'" sing N N 47 A "O3'" "HO3'" sing N N 48 A "C2'" "O2'" sing N N 49 A "C2'" "C1'" sing N N 50 A "C2'" "H2'" sing N N 51 A "O2'" "HO2'" sing N N 52 A "C1'" N9 sing N N 53 A "C1'" "H1'" sing N N 54 A N9 C8 sing Y N 55 A N9 C4 sing Y N 56 A C8 N7 doub Y N 57 A C8 H8 sing N N 58 A N7 C5 sing Y N 59 A C5 C6 sing Y N 60 A C5 C4 doub Y N 61 A C6 N6 sing N N 62 A C6 N1 doub Y N 63 A N6 H61 sing N N 64 A N6 H62 sing N N 65 A N1 C2 sing Y N 66 A C2 N3 doub Y N 67 A C2 H2 sing N N 68 A N3 C4 sing Y N 69 C OP3 P sing N N 70 C OP3 HOP3 sing N N 71 C P OP1 doub N N 72 C P OP2 sing N N 73 C P "O5'" sing N N 74 C OP2 HOP2 sing N N 75 C "O5'" "C5'" sing N N 76 C "C5'" "C4'" sing N N 77 C "C5'" "H5'" sing N N 78 C "C5'" "H5''" sing N N 79 C "C4'" "O4'" sing N N 80 C "C4'" "C3'" sing N N 81 C "C4'" "H4'" sing N N 82 C "O4'" "C1'" sing N N 83 C "C3'" "O3'" sing N N 84 C "C3'" "C2'" sing N N 85 C "C3'" "H3'" sing N N 86 C "O3'" "HO3'" sing N N 87 C "C2'" "O2'" sing N N 88 C "C2'" "C1'" sing N N 89 C "C2'" "H2'" sing N N 90 C "O2'" "HO2'" sing N N 91 C "C1'" N1 sing N N 92 C "C1'" "H1'" sing N N 93 C N1 C2 sing N N 94 C N1 C6 sing N N 95 C C2 O2 doub N N 96 C C2 N3 sing N N 97 C N3 C4 doub N N 98 C C4 N4 sing N N 99 C C4 C5 sing N N 100 C N4 H41 sing N N 101 C N4 H42 sing N N 102 C C5 C6 doub N N 103 C C5 H5 sing N N 104 C C6 H6 sing N N 105 DMS S O doub N N 106 DMS S C1 sing N N 107 DMS S C2 sing N N 108 DMS C1 H11 sing N N 109 DMS C1 H12 sing N N 110 DMS C1 H13 sing N N 111 DMS C2 H21 sing N N 112 DMS C2 H22 sing N N 113 DMS C2 H23 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 HOH O H1 sing N N 155 HOH O H2 sing N N 156 U OP3 P sing N N 157 U OP3 HOP3 sing N N 158 U P OP1 doub N N 159 U P OP2 sing N N 160 U P "O5'" sing N N 161 U OP2 HOP2 sing N N 162 U "O5'" "C5'" sing N N 163 U "C5'" "C4'" sing N N 164 U "C5'" "H5'" sing N N 165 U "C5'" "H5''" sing N N 166 U "C4'" "O4'" sing N N 167 U "C4'" "C3'" sing N N 168 U "C4'" "H4'" sing N N 169 U "O4'" "C1'" sing N N 170 U "C3'" "O3'" sing N N 171 U "C3'" "C2'" sing N N 172 U "C3'" "H3'" sing N N 173 U "O3'" "HO3'" sing N N 174 U "C2'" "O2'" sing N N 175 U "C2'" "C1'" sing N N 176 U "C2'" "H2'" sing N N 177 U "O2'" "HO2'" sing N N 178 U "C1'" N1 sing N N 179 U "C1'" "H1'" sing N N 180 U N1 C2 sing N N 181 U N1 C6 sing N N 182 U C2 O2 doub N N 183 U C2 N3 sing N N 184 U N3 C4 sing N N 185 U N3 H3 sing N N 186 U C4 O4 doub N N 187 U C4 C5 sing N N 188 U C5 C6 doub N N 189 U C5 H5 sing N N 190 U C6 H6 sing N N 191 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5BJP 'double helix' 5BJP 'a-form double helix' 5BJP 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 36 1_555 -0.060 -0.118 0.190 -0.253 -10.234 -1.290 1 E_G1:C36_E E 1 ? E 36 ? 19 1 1 A G 2 1_555 A C 35 1_555 0.145 -0.116 -0.076 -1.159 -14.259 1.334 2 E_G2:C35_E E 2 ? E 35 ? 19 1 1 A C 3 1_555 A G 34 1_555 -0.039 -0.115 0.036 7.197 -16.251 -1.924 3 E_C3:G34_E E 3 ? E 34 ? 19 1 1 A G 4 1_555 A C 33 1_555 -0.381 -0.235 0.140 -4.172 -10.095 -1.316 4 E_G4:C33_E E 4 ? E 33 ? 19 1 1 A C 5 1_555 A G 32 1_555 0.065 -0.091 -0.201 10.388 -14.822 0.457 5 E_C5:G32_E E 5 ? E 32 ? 19 1 1 A G 9 1_555 A C 18 1_555 -0.650 -0.244 -0.015 -7.771 6.818 1.743 6 E_G9:C18_E E 9 ? E 18 ? 19 1 1 A G 13 1_555 A G 26 1_555 -1.698 -3.390 -0.199 1.265 5.254 90.041 7 E_G13:G26_E E 13 ? E 26 ? 6 3 1 A G 12 1_555 A G 25 1_555 -1.618 -3.393 -0.719 5.730 4.349 91.225 8 E_G12:G25_E E 12 ? E 25 ? 6 3 1 A G 15 1_555 A G 22 1_555 1.639 3.365 -0.221 -18.650 11.479 -88.022 9 E_G15:G22_E E 15 ? E 22 ? 6 3 1 A G 16 1_555 A G 23 1_555 1.651 3.295 -0.096 -5.919 7.609 -90.489 10 E_G16:G23_E E 16 ? E 23 ? 6 3 1 A U 27 1_555 A A 21 1_555 -1.133 1.850 0.191 -8.523 18.033 -46.617 11 E_U27:A21_E E 27 ? E 21 ? ? ? 1 A C 28 1_555 A G 20 1_555 0.028 -0.254 -0.306 19.775 17.924 2.204 12 E_C28:G20_E E 28 ? E 20 ? 19 1 1 B G 1 1_555 B C 36 1_555 0.197 0.040 0.406 5.445 -11.006 -4.542 13 Y_G1:C36_Y Y 1 ? Y 36 ? 19 1 1 B G 2 1_555 B C 35 1_555 -0.485 -0.244 0.054 -1.297 -17.062 -1.210 14 Y_G2:C35_Y Y 2 ? Y 35 ? 19 1 1 B C 3 1_555 B G 34 1_555 -0.081 -0.176 0.638 -10.952 -7.941 -4.075 15 Y_C3:G34_Y Y 3 ? Y 34 ? 19 1 1 B G 4 1_555 B C 33 1_555 -0.267 -0.156 -0.079 -3.225 -15.840 0.262 16 Y_G4:C33_Y Y 4 ? Y 33 ? 19 1 1 B C 5 1_555 B G 32 1_555 0.257 -0.176 -0.248 0.930 -8.388 -0.826 17 Y_C5:G32_Y Y 5 ? Y 32 ? 19 1 1 B G 9 1_555 B C 18 1_555 -0.558 -0.169 -0.121 -13.516 9.555 -2.136 18 Y_G9:C18_Y Y 9 ? Y 18 ? 19 1 1 B G 26 1_555 B G 13 1_555 1.693 3.103 -0.054 -0.276 -4.521 -91.726 19 Y_G26:G13_Y Y 26 ? Y 13 ? 6 3 1 B G 12 1_555 B G 25 1_555 -1.804 -3.311 -0.256 4.312 5.574 89.726 20 Y_G12:G25_Y Y 12 ? Y 25 ? 6 3 1 B G 15 1_555 B G 22 1_555 1.682 3.481 -0.300 -10.839 12.826 -87.330 21 Y_G15:G22_Y Y 15 ? Y 22 ? 6 3 1 B G 16 1_555 B G 23 1_555 1.578 3.404 -0.111 -1.628 3.811 -92.099 22 Y_G16:G23_Y Y 16 ? Y 23 ? 6 3 1 B U 27 1_555 B A 21 1_555 -0.826 1.705 0.253 -10.146 12.551 -44.326 23 Y_U27:A21_Y Y 27 ? Y 21 ? ? ? 1 B C 28 1_555 B G 20 1_555 0.227 -0.256 -0.339 25.299 11.647 1.009 24 Y_C28:G20_Y Y 28 ? Y 20 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 36 1_555 A G 2 1_555 A C 35 1_555 -0.014 -1.171 3.276 0.028 9.759 33.795 -3.331 0.027 2.839 16.369 -0.046 35.136 1 EE_G1G2:C35C36_EE E 1 ? E 36 ? E 2 ? E 35 ? 1 A G 2 1_555 A C 35 1_555 A C 3 1_555 A G 34 1_555 0.201 -1.150 2.998 -1.222 5.166 31.202 -2.957 -0.569 2.767 9.518 2.252 31.639 2 EE_G2C3:G34C35_EE E 2 ? E 35 ? E 3 ? E 34 ? 1 A C 3 1_555 A G 34 1_555 A G 4 1_555 A C 33 1_555 -0.338 -1.800 3.406 -2.201 9.031 30.785 -4.822 0.228 2.796 16.545 4.032 32.125 3 EE_C3G4:C33G34_EE E 3 ? E 34 ? E 4 ? E 33 ? 1 A G 4 1_555 A C 33 1_555 A C 5 1_555 A G 32 1_555 0.885 -1.278 2.948 4.559 1.252 32.075 -2.490 -0.854 2.992 2.251 -8.195 32.412 4 EE_G4C5:G32C33_EE E 4 ? E 33 ? E 5 ? E 32 ? 1 A G 9 1_555 A C 18 1_555 A G 13 1_555 A G 26 1_555 6.931 1.263 0.177 40.204 -145.372 -7.074 -0.858 3.524 -0.618 85.857 23.745 -150.885 5 EE_G9G13:G26C18_EE E 9 ? E 18 ? E 13 ? E 26 ? 1 A G 12 1_555 A G 25 1_555 A G 15 1_555 A G 22 1_555 1.813 3.236 0.508 -15.235 11.068 -179.167 -1.618 0.906 0.508 -5.534 -7.618 -179.178 6 EE_G12G15:G22G25_EE E 12 ? E 25 ? E 15 ? E 22 ? 1 A G 15 1_555 A G 22 1_555 A G 16 1_555 A G 23 1_555 0.148 -1.445 3.110 5.133 5.796 31.544 -3.518 0.560 2.796 10.465 -9.267 32.457 7 EE_G15G16:G23G22_EE E 15 ? E 22 ? E 16 ? E 23 ? 1 A G 16 1_555 A G 23 1_555 A U 27 1_555 A A 21 1_555 1.350 -0.790 3.852 13.132 1.041 -159.241 0.398 0.727 3.824 -0.529 6.674 -159.380 8 EE_G16U27:A21G23_EE E 16 ? E 23 ? E 27 ? E 21 ? 1 A U 27 1_555 A A 21 1_555 A C 28 1_555 A G 20 1_555 0.860 0.560 2.885 4.397 10.013 7.436 -8.537 1.084 2.335 51.170 -22.472 13.219 9 EE_U27C28:G20A21_EE E 27 ? E 21 ? E 28 ? E 20 ? 1 B G 1 1_555 B C 36 1_555 B G 2 1_555 B C 35 1_555 -0.451 -1.677 3.321 0.369 8.454 29.066 -4.830 0.935 2.730 16.410 -0.716 30.247 10 YY_G1G2:C35C36_YY Y 1 ? Y 36 ? Y 2 ? Y 35 ? 1 B G 2 1_555 B C 35 1_555 B C 3 1_555 B G 34 1_555 0.098 -1.358 3.452 -5.411 5.310 38.020 -2.715 -0.828 3.198 8.053 8.206 38.741 11 YY_G2C3:G34C35_YY Y 2 ? Y 35 ? Y 3 ? Y 34 ? 1 B C 3 1_555 B G 34 1_555 B G 4 1_555 B C 33 1_555 0.385 -1.633 2.703 7.345 14.178 29.715 -4.522 0.215 1.804 25.464 -13.192 33.648 12 YY_C3G4:C33G34_YY Y 3 ? Y 34 ? Y 4 ? Y 33 ? 1 B G 4 1_555 B C 33 1_555 B C 5 1_555 B G 32 1_555 0.546 -1.333 3.272 -0.930 4.069 36.582 -2.651 -0.988 3.097 6.457 1.475 36.811 13 YY_G4C5:G32C33_YY Y 4 ? Y 33 ? Y 5 ? Y 32 ? 1 B G 9 1_555 B C 18 1_555 B G 26 1_555 B G 13 1_555 6.820 1.085 0.338 36.386 -149.783 -15.329 -0.629 3.480 -0.504 85.752 20.831 -154.374 14 YY_G9G26:G13C18_YY Y 9 ? Y 18 ? Y 26 ? Y 13 ? 1 B G 12 1_555 B G 25 1_555 B G 15 1_555 B G 22 1_555 -1.844 -3.288 0.392 17.850 -8.266 179.310 -1.644 0.922 0.392 -4.133 -8.925 179.320 15 YY_G12G15:G22G25_YY Y 12 ? Y 25 ? Y 15 ? Y 22 ? 1 B G 15 1_555 B G 22 1_555 B G 16 1_555 B G 23 1_555 0.184 -1.443 3.108 2.226 3.633 33.158 -3.067 0.022 2.943 6.334 -3.881 33.423 16 YY_G15G16:G23G22_YY Y 15 ? Y 22 ? Y 16 ? Y 23 ? 1 B G 16 1_555 B G 23 1_555 B U 27 1_555 B A 21 1_555 1.523 -0.907 3.861 7.684 2.116 -158.871 0.455 0.799 3.844 -1.076 3.908 -158.923 17 YY_G16U27:A21G23_YY Y 16 ? Y 23 ? Y 27 ? Y 21 ? 1 B U 27 1_555 B A 21 1_555 B C 28 1_555 B G 20 1_555 0.853 0.670 2.645 5.188 9.790 8.090 -6.591 1.408 2.363 47.690 -25.270 13.711 18 YY_U27C28:G20A21_YY Y 27 ? Y 21 ? Y 28 ? Y 20 ? # _atom_sites.entry_id 5BJP _atom_sites.fract_transf_matrix[1][1] 0.027291 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018038 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010134 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F IR K MG N O P S # loop_