HEADER ISOMERASE 22-MAY-15 5BMN TITLE CRYSTAL STRUCTURE OF APO FORM OF PHOSPHOGLUCOMUTASE FROM XANTHOMONAS TITLE 2 CITRI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.4.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI (STRAIN 306); SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 GENE: XANA, XAC3579; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PHOSPHOGLUCOMUTASE CITRUS CANKER, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.S.GOTO,H.M.PEREIRA,M.T.M.NOVO MANSUR,J.BRANDAO-NETO REVDAT 4 27-SEP-23 5BMN 1 JRNL REMARK REVDAT 3 28-SEP-16 5BMN 1 JRNL REVDAT 2 07-SEP-16 5BMN 1 JRNL REVDAT 1 01-JUN-16 5BMN 0 JRNL AUTH L.S.GOTO,A.VESSONI ALEXANDRINO,C.MALVESSI PEREIRA, JRNL AUTH 2 C.SILVA MARTINS,H.D'MUNIZ PEREIRA,J.BRANDAO-NETO, JRNL AUTH 3 M.T.MARQUES NOVO-MANSUR JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE JRNL TITL 2 PHOSPHOGLUCOMUTASE FROM XANTHOMONAS CITRI SUBSP. CITRI. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1864 1658 2016 JRNL REFN ISSN 0006-3002 JRNL PMID 27567706 JRNL DOI 10.1016/J.BBAPAP.2016.08.014 REMARK 2 REMARK 2 RESOLUTION. 1.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 112557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1000 - 3.9444 0.99 3847 201 0.1462 0.1699 REMARK 3 2 3.9444 - 3.1314 0.99 3690 191 0.1475 0.1660 REMARK 3 3 3.1314 - 2.7358 0.99 3643 193 0.1669 0.1991 REMARK 3 4 2.7358 - 2.4857 1.00 3650 193 0.1697 0.1987 REMARK 3 5 2.4857 - 2.3076 1.00 3592 182 0.1654 0.2005 REMARK 3 6 2.3076 - 2.1715 1.00 3648 149 0.1630 0.1905 REMARK 3 7 2.1715 - 2.0628 1.00 3607 190 0.1545 0.1708 REMARK 3 8 2.0628 - 1.9730 1.00 3544 203 0.1580 0.1638 REMARK 3 9 1.9730 - 1.8971 1.00 3607 163 0.1660 0.1841 REMARK 3 10 1.8971 - 1.8316 1.00 3579 179 0.1647 0.1917 REMARK 3 11 1.8316 - 1.7743 1.00 3595 177 0.1614 0.1715 REMARK 3 12 1.7743 - 1.7236 1.00 3545 188 0.1706 0.1901 REMARK 3 13 1.7236 - 1.6782 1.00 3575 186 0.1679 0.2000 REMARK 3 14 1.6782 - 1.6373 1.00 3557 188 0.1708 0.1907 REMARK 3 15 1.6373 - 1.6001 1.00 3551 207 0.1612 0.1867 REMARK 3 16 1.6001 - 1.5660 1.00 3537 188 0.1633 0.1806 REMARK 3 17 1.5660 - 1.5347 1.00 3547 221 0.1667 0.1791 REMARK 3 18 1.5347 - 1.5057 1.00 3544 166 0.1709 0.1825 REMARK 3 19 1.5057 - 1.4788 1.00 3568 190 0.1783 0.1885 REMARK 3 20 1.4788 - 1.4538 1.00 3512 195 0.1815 0.2080 REMARK 3 21 1.4538 - 1.4303 1.00 3520 215 0.1927 0.2335 REMARK 3 22 1.4303 - 1.4083 0.99 3506 168 0.2019 0.2108 REMARK 3 23 1.4083 - 1.3876 1.00 3523 196 0.2032 0.2043 REMARK 3 24 1.3876 - 1.3681 0.99 3526 166 0.2042 0.2136 REMARK 3 25 1.3681 - 1.3496 0.99 3472 221 0.2135 0.2259 REMARK 3 26 1.3496 - 1.3320 1.00 3511 195 0.2150 0.2304 REMARK 3 27 1.3320 - 1.3154 0.98 3475 191 0.2186 0.2363 REMARK 3 28 1.3154 - 1.2995 0.99 3523 177 0.2355 0.2555 REMARK 3 29 1.2995 - 1.2844 0.98 3440 178 0.2360 0.2455 REMARK 3 30 1.2844 - 1.2700 0.97 3484 182 0.2502 0.2570 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3524 REMARK 3 ANGLE : 1.118 4783 REMARK 3 CHIRALITY : 0.077 525 REMARK 3 PLANARITY : 0.006 636 REMARK 3 DIHEDRAL : 13.491 1290 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1506 40.1081 22.7457 REMARK 3 T TENSOR REMARK 3 T11: 0.1266 T22: 0.1229 REMARK 3 T33: 0.1365 T12: 0.0131 REMARK 3 T13: 0.0066 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.6598 L22: 0.7634 REMARK 3 L33: 2.2646 L12: -0.4741 REMARK 3 L13: -0.8366 L23: 0.9098 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: -0.0094 S13: -0.0525 REMARK 3 S21: 0.0093 S22: 0.0476 S23: -0.0040 REMARK 3 S31: 0.1707 S32: 0.1225 S33: -0.0039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 220 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6398 56.6934 28.4743 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.1292 REMARK 3 T33: 0.1301 T12: -0.0018 REMARK 3 T13: 0.0134 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.1521 L22: 0.4959 REMARK 3 L33: 0.9996 L12: -0.1614 REMARK 3 L13: -0.0045 L23: -0.2923 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: 0.0005 S13: -0.0163 REMARK 3 S21: 0.0052 S22: 0.0001 S23: 0.0106 REMARK 3 S31: -0.0385 S32: -0.0360 S33: 0.0306 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 470 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0632 63.9853 10.4256 REMARK 3 T TENSOR REMARK 3 T11: 0.1389 T22: 0.1243 REMARK 3 T33: 0.1338 T12: 0.0182 REMARK 3 T13: -0.0067 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.4719 L22: 1.2875 REMARK 3 L33: 1.5388 L12: 0.0978 REMARK 3 L13: 0.0914 L23: -0.0114 REMARK 3 S TENSOR REMARK 3 S11: 0.0719 S12: 0.2169 S13: -0.0423 REMARK 3 S21: -0.1585 S22: -0.0152 S23: 0.0502 REMARK 3 S31: -0.0249 S32: -0.0048 S33: -0.0655 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112663 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.270 REMARK 200 RESOLUTION RANGE LOW (A) : 52.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.64300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2K2Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5 % PEG 1000, 12.5 % PEG 3350, 12.5 REMARK 280 % MPD, 30 MM MGCL2, 30 MM CACL2, 100 MM MOPS/HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.99000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.99000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 LEU A 16 REMARK 465 VAL A 17 REMARK 465 PRO A 18 REMARK 465 ARG A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 HIS A 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 409 O HOH A 601 1.88 REMARK 500 O HOH A 1046 O HOH A 1062 1.93 REMARK 500 OE1 GLU A 222 O HOH A 602 1.95 REMARK 500 NZ LYS A 245 O HOH A 603 1.95 REMARK 500 OE1 GLU A 351 O HOH A 604 1.96 REMARK 500 OD1 ASP A 378 O HOH A 605 1.99 REMARK 500 OD2 ASP A 58 O HOH A 606 2.02 REMARK 500 O HOH A 947 O HOH A 1005 2.04 REMARK 500 O HOH A 987 O HOH A 1037 2.04 REMARK 500 NH1 ARG A 445 O HOH A 607 2.04 REMARK 500 OE2 GLU A 342 O HOH A 608 2.06 REMARK 500 O HOH A 732 O HOH A 957 2.11 REMARK 500 O HOH A 1126 O HOH A 1143 2.13 REMARK 500 O HOH A 771 O HOH A 1112 2.14 REMARK 500 O THR A 155 O HOH A 609 2.15 REMARK 500 OD1 ASP A 378 O HOH A 610 2.15 REMARK 500 O HOH A 884 O HOH A 915 2.16 REMARK 500 O PRO A 232 O HOH A 611 2.16 REMARK 500 O HOH A 811 O HOH A 1069 2.17 REMARK 500 O HOH A 962 O HOH A 1071 2.18 REMARK 500 O HOH A 940 O HOH A 1119 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 775 O HOH A 1085 3645 1.92 REMARK 500 O HOH A 744 O HOH A 1085 3645 2.05 REMARK 500 O HOH A 979 O HOH A 1033 3645 2.11 REMARK 500 O HOH A 1075 O HOH A 1116 3755 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 -169.60 -101.17 REMARK 500 SEP A 119 -108.54 49.31 REMARK 500 ARG A 132 -150.03 -107.84 REMARK 500 THR A 304 -37.32 -135.60 REMARK 500 SER A 344 37.45 -93.55 REMARK 500 PHE A 352 47.92 -95.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1180 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1181 DISTANCE = 6.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SEP A 119 OG REMARK 620 2 SEP A 119 O2P 74.4 REMARK 620 3 ASP A 259 OD2 90.7 97.4 REMARK 620 4 ASP A 261 OD1 85.7 155.3 97.4 REMARK 620 5 ASP A 263 OD1 171.1 102.3 98.0 95.1 REMARK 620 6 HOH A 614 O 86.2 72.4 169.8 92.1 84.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BMN RELATED DB: PDB REMARK 900 RELATED ID: 5BMR RELATED DB: PDB DBREF 5BMN A 23 470 UNP Q8PGN7 Q8PGN7_XANAC 3 450 SEQADV 5BMN MET A 3 UNP Q8PGN7 INITIATING METHIONINE SEQADV 5BMN GLY A 4 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN SER A 5 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN SER A 6 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN HIS A 7 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN HIS A 8 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN HIS A 9 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN HIS A 10 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN HIS A 11 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN HIS A 12 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN SER A 13 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN SER A 14 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN GLY A 15 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN LEU A 16 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN VAL A 17 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN PRO A 18 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN ARG A 19 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN GLY A 20 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN SER A 21 UNP Q8PGN7 EXPRESSION TAG SEQADV 5BMN HIS A 22 UNP Q8PGN7 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 468 LEU VAL PRO ARG GLY SER HIS MET THR LEU PRO ALA PHE SEQRES 3 A 468 LYS ALA TYR ASP ILE ARG GLY ARG VAL PRO ASP GLU LEU SEQRES 4 A 468 ASN GLU ASP LEU ALA ARG ARG ILE GLY VAL ALA LEU ALA SEQRES 5 A 468 ALA GLN LEU ASP GLN GLY PRO VAL VAL LEU GLY HIS ASP SEQRES 6 A 468 VAL ARG LEU ALA SER PRO ALA LEU GLN GLU ALA LEU SER SEQRES 7 A 468 ALA GLY LEU ARG ALA SER GLY ARG ASP VAL ILE ASP ILE SEQRES 8 A 468 GLY LEU CYS GLY THR GLU GLU VAL TYR PHE GLN THR ASP SEQRES 9 A 468 TYR LEU LYS ALA ALA GLY GLY VAL MET VAL THR ALA SEP SEQRES 10 A 468 HIS ASN PRO MET ASP TYR ASN GLY MET LYS LEU VAL ARG SEQRES 11 A 468 GLU GLN ALA ARG PRO ILE SER SER ASP THR GLY LEU PHE SEQRES 12 A 468 ALA ILE ARG ASP THR VAL ALA ALA ASP THR ALA ALA PRO SEQRES 13 A 468 GLY GLU PRO THR ALA SER GLU GLN SER ARG THR ASP LYS SEQRES 14 A 468 THR ALA TYR LEU GLU HIS LEU LEU SER TYR VAL ASP ARG SEQRES 15 A 468 SER THR LEU LYS PRO LEU LYS LEU VAL VAL ASN ALA GLY SEQRES 16 A 468 ASN GLY GLY ALA GLY LEU ILE VAL ASP LEU LEU ALA PRO SEQRES 17 A 468 HIS LEU PRO PHE GLU PHE VAL ARG VAL PHE HIS GLU PRO SEQRES 18 A 468 ASP GLY ASN PHE PRO ASN GLY ILE PRO ASN PRO LEU LEU SEQRES 19 A 468 PRO GLU ASN ARG ASP ALA THR ALA LYS ALA VAL LYS ASP SEQRES 20 A 468 ASN GLY ALA ASP PHE GLY ILE ALA TRP ASP GLY ASP PHE SEQRES 21 A 468 ASP ARG CYS PHE PHE PHE ASP HIS THR GLY ARG PHE ILE SEQRES 22 A 468 GLU GLY TYR TYR LEU VAL GLY LEU LEU ALA GLN ALA ILE SEQRES 23 A 468 LEU ALA LYS GLN PRO GLY GLY LYS VAL VAL HIS ASP PRO SEQRES 24 A 468 ARG LEU THR TRP ASN THR VAL GLU GLN VAL GLU GLU ALA SEQRES 25 A 468 GLY GLY ILE PRO VAL LEU CYS LYS SER GLY HIS ALA PHE SEQRES 26 A 468 ILE LYS GLU LYS MET ARG SER GLU ASN ALA VAL TYR GLY SEQRES 27 A 468 GLY GLU MET SER ALA HIS HIS TYR PHE ARG GLU PHE ALA SEQRES 28 A 468 TYR ALA ASP SER GLY MET ILE PRO TRP LEU LEU ILE ALA SEQRES 29 A 468 GLU LEU VAL SER GLN SER GLY ARG SER LEU ALA ASP LEU SEQRES 30 A 468 VAL GLU ALA ARG MET GLN LYS PHE PRO CYS SER GLY GLU SEQRES 31 A 468 ILE ASN PHE LYS VAL ALA ASP ALA LYS ALA SER VAL ALA SEQRES 32 A 468 ARG VAL MET GLU HIS TYR ALA SER LEU SER PRO GLU LEU SEQRES 33 A 468 ASP TYR THR ASP GLY ILE SER ALA ASP PHE GLY GLN TRP SEQRES 34 A 468 ARG PHE ASN LEU ARG SER SER ASN THR GLU PRO LEU LEU SEQRES 35 A 468 ARG LEU ASN VAL GLU THR ARG GLY ASP ALA ALA LEU LEU SEQRES 36 A 468 GLU THR ARG THR GLN GLU ILE SER ASN LEU LEU ARG GLY MODRES 5BMN SEP A 119 SER MODIFIED RESIDUE HET SEP A 119 10 HET MG A 501 1 HETNAM SEP PHOSPHOSERINE HETNAM MG MAGNESIUM ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 MG MG 2+ FORMUL 3 HOH *581(H2 O) HELIX 1 AA1 ASN A 42 LEU A 57 1 16 HELIX 2 AA2 ALA A 71 SER A 86 1 16 HELIX 3 AA3 GLY A 97 LEU A 108 1 12 HELIX 4 AA4 ARG A 132 ARG A 136 5 5 HELIX 5 AA5 GLY A 143 ASP A 154 1 12 HELIX 6 AA6 LYS A 171 SER A 180 1 10 HELIX 7 AA7 TYR A 181 VAL A 182 5 2 HELIX 8 AA8 ASP A 183 LEU A 187 5 5 HELIX 9 AA9 GLY A 200 ALA A 209 1 10 HELIX 10 AB1 PRO A 210 LEU A 212 5 3 HELIX 11 AB2 LEU A 236 GLY A 251 1 16 HELIX 12 AB3 GLU A 276 ALA A 290 1 15 HELIX 13 AB4 THR A 304 ALA A 314 1 11 HELIX 14 AB5 GLY A 324 ASN A 336 1 13 HELIX 15 AB6 GLU A 351 ALA A 353 5 3 HELIX 16 AB7 MET A 359 GLY A 373 1 15 HELIX 17 AB8 SER A 375 PHE A 387 1 13 HELIX 18 AB9 ASP A 399 ALA A 412 1 14 HELIX 19 AC1 SER A 413 SER A 415 5 3 HELIX 20 AC2 ASP A 453 GLY A 470 1 18 SHEET 1 AA1 6 ILE A 33 ARG A 36 0 SHEET 2 AA1 6 TYR A 125 VAL A 131 -1 O MET A 128 N ILE A 33 SHEET 3 AA1 6 GLY A 112 VAL A 116 -1 N GLY A 113 O VAL A 131 SHEET 4 AA1 6 VAL A 62 HIS A 66 1 N GLY A 65 O VAL A 116 SHEET 5 AA1 6 VAL A 90 LEU A 95 1 O ILE A 91 N VAL A 62 SHEET 6 AA1 6 GLU A 165 SER A 167 1 O GLN A 166 N ASP A 92 SHEET 1 AA2 4 GLU A 215 VAL A 219 0 SHEET 2 AA2 4 LYS A 191 ASN A 195 1 N VAL A 194 O VAL A 219 SHEET 3 AA2 4 PHE A 254 TRP A 258 1 O ILE A 256 N ASN A 195 SHEET 4 AA2 4 CYS A 265 PHE A 268 -1 O PHE A 268 N GLY A 255 SHEET 1 AA3 4 ILE A 317 LEU A 320 0 SHEET 2 AA3 4 LYS A 296 HIS A 299 1 N VAL A 297 O VAL A 319 SHEET 3 AA3 4 TYR A 339 GLU A 342 1 O TYR A 339 N VAL A 298 SHEET 4 AA3 4 HIS A 346 PHE A 349 -1 O TYR A 348 N GLY A 340 SHEET 1 AA4 5 ILE A 393 LYS A 396 0 SHEET 2 AA4 5 LEU A 443 THR A 450 -1 O LEU A 444 N PHE A 395 SHEET 3 AA4 5 TRP A 431 SER A 437 -1 N ARG A 436 O ARG A 445 SHEET 4 AA4 5 ILE A 424 ASP A 427 -1 N ALA A 426 O PHE A 433 SHEET 5 AA4 5 GLU A 417 ASP A 419 -1 N ASP A 419 O SER A 425 LINK C ALA A 118 N SEP A 119 1555 1555 1.33 LINK C SEP A 119 N HIS A 120 1555 1555 1.33 LINK OG SEP A 119 MG MG A 501 1555 1555 2.47 LINK O2P SEP A 119 MG MG A 501 1555 1555 1.85 LINK OD2 ASP A 259 MG MG A 501 1555 1555 2.05 LINK OD1 ASP A 261 MG MG A 501 1555 1555 2.21 LINK OD1 ASP A 263 MG MG A 501 1555 1555 2.10 LINK MG MG A 501 O HOH A 614 1555 1555 2.20 CISPEP 1 VAL A 37 PRO A 38 0 4.21 SITE 1 AC1 5 SEP A 119 ASP A 259 ASP A 261 ASP A 263 SITE 2 AC1 5 HOH A 614 CRYST1 43.980 55.180 174.700 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005724 0.00000