data_5BMQ # _entry.id 5BMQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5BMQ WWPDB D_1000210179 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.details . _pdbx_database_related.db_id MCSG-APC111103 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5BMQ _pdbx_database_status.recvd_initial_deposition_date 2015-05-22 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Bigelow, L.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structures of L,D-transpeptidases (Yku)' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Bigelow, L.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5BMQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 143.356 _cell.length_a_esd ? _cell.length_b 143.356 _cell.length_b_esd ? _cell.length_c 143.356 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ErfK/YbiS/YcfS/YnhG family protein' 27033.600 1 3.-.-.- ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn '1,4-DIETHYLENE DIOXIDE' 88.105 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 246 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;AYASDGSDQADLVSATEEAKDEKSEEPTPSETPTETETATPTTDHDCGKAGEYQKDLETTLASLADYGTIFADGKQSKED CAAIKKFQKR(MSE)GIQPAEGYAGKLTLDVAQRIAKSSFDKCQEAKKGKTVCVDLTHQTLWVVEDGKRIFEPTVVRTG (MSE)AGYATQPGAWKIFVKEGTHWSKKYKVWLPYWQNFNNGEGLHTTTTYIHEPWIGSHGCVNLLPSDSKKLYE(MSE) LDFGDTVQVFGNRPGT ; _entity_poly.pdbx_seq_one_letter_code_can ;AYASDGSDQADLVSATEEAKDEKSEEPTPSETPTETETATPTTDHDCGKAGEYQKDLETTLASLADYGTIFADGKQSKED CAAIKKFQKRMGIQPAEGYAGKLTLDVAQRIAKSSFDKCQEAKKGKTVCVDLTHQTLWVVEDGKRIFEPTVVRTGMAGYA TQPGAWKIFVKEGTHWSKKYKVWLPYWQNFNNGEGLHTTTTYIHEPWIGSHGCVNLLPSDSKKLYEMLDFGDTVQVFGNR PGT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MCSG-APC111103 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 TYR n 1 3 ALA n 1 4 SER n 1 5 ASP n 1 6 GLY n 1 7 SER n 1 8 ASP n 1 9 GLN n 1 10 ALA n 1 11 ASP n 1 12 LEU n 1 13 VAL n 1 14 SER n 1 15 ALA n 1 16 THR n 1 17 GLU n 1 18 GLU n 1 19 ALA n 1 20 LYS n 1 21 ASP n 1 22 GLU n 1 23 LYS n 1 24 SER n 1 25 GLU n 1 26 GLU n 1 27 PRO n 1 28 THR n 1 29 PRO n 1 30 SER n 1 31 GLU n 1 32 THR n 1 33 PRO n 1 34 THR n 1 35 GLU n 1 36 THR n 1 37 GLU n 1 38 THR n 1 39 ALA n 1 40 THR n 1 41 PRO n 1 42 THR n 1 43 THR n 1 44 ASP n 1 45 HIS n 1 46 ASP n 1 47 CYS n 1 48 GLY n 1 49 LYS n 1 50 ALA n 1 51 GLY n 1 52 GLU n 1 53 TYR n 1 54 GLN n 1 55 LYS n 1 56 ASP n 1 57 LEU n 1 58 GLU n 1 59 THR n 1 60 THR n 1 61 LEU n 1 62 ALA n 1 63 SER n 1 64 LEU n 1 65 ALA n 1 66 ASP n 1 67 TYR n 1 68 GLY n 1 69 THR n 1 70 ILE n 1 71 PHE n 1 72 ALA n 1 73 ASP n 1 74 GLY n 1 75 LYS n 1 76 GLN n 1 77 SER n 1 78 LYS n 1 79 GLU n 1 80 ASP n 1 81 CYS n 1 82 ALA n 1 83 ALA n 1 84 ILE n 1 85 LYS n 1 86 LYS n 1 87 PHE n 1 88 GLN n 1 89 LYS n 1 90 ARG n 1 91 MSE n 1 92 GLY n 1 93 ILE n 1 94 GLN n 1 95 PRO n 1 96 ALA n 1 97 GLU n 1 98 GLY n 1 99 TYR n 1 100 ALA n 1 101 GLY n 1 102 LYS n 1 103 LEU n 1 104 THR n 1 105 LEU n 1 106 ASP n 1 107 VAL n 1 108 ALA n 1 109 GLN n 1 110 ARG n 1 111 ILE n 1 112 ALA n 1 113 LYS n 1 114 SER n 1 115 SER n 1 116 PHE n 1 117 ASP n 1 118 LYS n 1 119 CYS n 1 120 GLN n 1 121 GLU n 1 122 ALA n 1 123 LYS n 1 124 LYS n 1 125 GLY n 1 126 LYS n 1 127 THR n 1 128 VAL n 1 129 CYS n 1 130 VAL n 1 131 ASP n 1 132 LEU n 1 133 THR n 1 134 HIS n 1 135 GLN n 1 136 THR n 1 137 LEU n 1 138 TRP n 1 139 VAL n 1 140 VAL n 1 141 GLU n 1 142 ASP n 1 143 GLY n 1 144 LYS n 1 145 ARG n 1 146 ILE n 1 147 PHE n 1 148 GLU n 1 149 PRO n 1 150 THR n 1 151 VAL n 1 152 VAL n 1 153 ARG n 1 154 THR n 1 155 GLY n 1 156 MSE n 1 157 ALA n 1 158 GLY n 1 159 TYR n 1 160 ALA n 1 161 THR n 1 162 GLN n 1 163 PRO n 1 164 GLY n 1 165 ALA n 1 166 TRP n 1 167 LYS n 1 168 ILE n 1 169 PHE n 1 170 VAL n 1 171 LYS n 1 172 GLU n 1 173 GLY n 1 174 THR n 1 175 HIS n 1 176 TRP n 1 177 SER n 1 178 LYS n 1 179 LYS n 1 180 TYR n 1 181 LYS n 1 182 VAL n 1 183 TRP n 1 184 LEU n 1 185 PRO n 1 186 TYR n 1 187 TRP n 1 188 GLN n 1 189 ASN n 1 190 PHE n 1 191 ASN n 1 192 ASN n 1 193 GLY n 1 194 GLU n 1 195 GLY n 1 196 LEU n 1 197 HIS n 1 198 THR n 1 199 THR n 1 200 THR n 1 201 THR n 1 202 TYR n 1 203 ILE n 1 204 HIS n 1 205 GLU n 1 206 PRO n 1 207 TRP n 1 208 ILE n 1 209 GLY n 1 210 SER n 1 211 HIS n 1 212 GLY n 1 213 CYS n 1 214 VAL n 1 215 ASN n 1 216 LEU n 1 217 LEU n 1 218 PRO n 1 219 SER n 1 220 ASP n 1 221 SER n 1 222 LYS n 1 223 LYS n 1 224 LEU n 1 225 TYR n 1 226 GLU n 1 227 MSE n 1 228 LEU n 1 229 ASP n 1 230 PHE n 1 231 GLY n 1 232 ASP n 1 233 THR n 1 234 VAL n 1 235 GLN n 1 236 VAL n 1 237 PHE n 1 238 GLY n 1 239 ASN n 1 240 ARG n 1 241 PRO n 1 242 GLY n 1 243 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 243 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Snas_6095 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 446470 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG68 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D3Q1D9_STANL _struct_ref.pdbx_db_accession D3Q1D9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AYASDGSDQADLVSATEEAKDEKSEEPTPSETPTETETATPTTDHDCGKAGEYQKDLETTLASLADYGTIFADGKQSKED CAAIKKFQKRMGIQPAEGYAGKLTLDVAQRIAKSSFDKCQEAKKGKTVCVDLTHQTLWVVEDGKRIFEPTVVRTGMAGYA TQPGAWKIFVKEGTHWSKKYKVWLPYWQNFNNGEGLHTTTTYIHEPWIGSHGCVNLLPSDSKKLYEMLDFGDTVQVFGNR PGT ; _struct_ref.pdbx_align_begin 61 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5BMQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 243 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D3Q1D9 _struct_ref_seq.db_align_beg 61 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 303 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 61 _struct_ref_seq.pdbx_auth_seq_align_end 303 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DIO non-polymer . '1,4-DIETHYLENE DIOXIDE' ? 'C4 H8 O2' 88.105 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5BMQ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.56 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 73.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.6 M ammonium sulfate, 0.1 M MES, pH 6.5, 10% dioxane' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-04-05 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97899 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97899 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5BMQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.050 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 30882 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.300 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 28.674 _reflns.pdbx_netI_over_sigmaI 12.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.938 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 225239 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.050 2.090 ? ? ? ? ? 1547 ? 100.000 ? ? ? ? 0.860 ? ? ? ? ? ? ? ? 7.300 ? 1.019 ? ? ? ? 0 1 1 ? ? 2.090 2.120 ? ? ? ? ? 1539 ? 100.000 ? ? ? ? 0.715 ? ? ? ? ? ? ? ? 7.300 ? 1.006 ? ? ? ? 0 2 1 ? ? 2.120 2.160 ? ? ? ? ? 1517 ? 100.000 ? ? ? ? 0.626 ? ? ? ? ? ? ? ? 7.300 ? 1.026 ? ? ? ? 0 3 1 ? ? 2.160 2.210 ? ? ? ? ? 1530 ? 100.000 ? ? ? ? 0.541 ? ? ? ? ? ? ? ? 7.300 ? 0.990 ? ? ? ? 0 4 1 ? ? 2.210 2.260 ? ? ? ? ? 1517 ? 100.000 ? ? ? ? 0.450 ? ? ? ? ? ? ? ? 7.400 ? 1.019 ? ? ? ? 0 5 1 ? ? 2.260 2.310 ? ? ? ? ? 1563 ? 100.000 ? ? ? ? 0.415 ? ? ? ? ? ? ? ? 7.400 ? 0.995 ? ? ? ? 0 6 1 ? ? 2.310 2.370 ? ? ? ? ? 1527 ? 100.000 ? ? ? ? 0.323 ? ? ? ? ? ? ? ? 7.400 ? 0.948 ? ? ? ? 0 7 1 ? ? 2.370 2.430 ? ? ? ? ? 1547 ? 100.000 ? ? ? ? 0.266 ? ? ? ? ? ? ? ? 7.400 ? 0.943 ? ? ? ? 0 8 1 ? ? 2.430 2.500 ? ? ? ? ? 1533 ? 100.000 ? ? ? ? 0.235 ? ? ? ? ? ? ? ? 7.400 ? 0.938 ? ? ? ? 0 9 1 ? ? 2.500 2.580 ? ? ? ? ? 1522 ? 100.000 ? ? ? ? 0.181 ? ? ? ? ? ? ? ? 7.400 ? 0.910 ? ? ? ? 0 10 1 ? ? 2.580 2.680 ? ? ? ? ? 1576 ? 100.000 ? ? ? ? 0.163 ? ? ? ? ? ? ? ? 7.400 ? 0.899 ? ? ? ? 0 11 1 ? ? 2.680 2.780 ? ? ? ? ? 1528 ? 100.000 ? ? ? ? 0.115 ? ? ? ? ? ? ? ? 7.400 ? 0.839 ? ? ? ? 0 12 1 ? ? 2.780 2.910 ? ? ? ? ? 1538 ? 100.000 ? ? ? ? 0.090 ? ? ? ? ? ? ? ? 7.400 ? 0.800 ? ? ? ? 0 13 1 ? ? 2.910 3.060 ? ? ? ? ? 1536 ? 100.000 ? ? ? ? 0.071 ? ? ? ? ? ? ? ? 7.400 ? 0.811 ? ? ? ? 0 14 1 ? ? 3.060 3.250 ? ? ? ? ? 1545 ? 100.000 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 7.400 ? 0.848 ? ? ? ? 0 15 1 ? ? 3.250 3.510 ? ? ? ? ? 1564 ? 100.000 ? ? ? ? 0.056 ? ? ? ? ? ? ? ? 7.300 ? 1.027 ? ? ? ? 0 16 1 ? ? 3.510 3.860 ? ? ? ? ? 1566 ? 100.000 ? ? ? ? 0.052 ? ? ? ? ? ? ? ? 7.300 ? 1.141 ? ? ? ? 0 17 1 ? ? 3.860 4.420 ? ? ? ? ? 1570 ? 99.900 ? ? ? ? 0.045 ? ? ? ? ? ? ? ? 7.200 ? 1.039 ? ? ? ? 0 18 1 ? ? 4.420 5.560 ? ? ? ? ? 1558 ? 100.000 ? ? ? ? 0.038 ? ? ? ? ? ? ? ? 7.000 ? 0.811 ? ? ? ? 0 19 1 ? ? 5.560 50.000 ? ? ? ? ? 1559 ? 94.700 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 6.600 ? 0.722 ? ? ? ? 0 20 1 ? ? # _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.B_iso_max 76.780 _refine.B_iso_mean 29.7180 _refine.B_iso_min 14.220 _refine.correlation_coeff_Fo_to_Fc 0.9620 _refine.correlation_coeff_Fo_to_Fc_free 0.9540 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5BMQ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.0500 _refine.ls_d_res_low 32.0800 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 28664 _refine.ls_number_reflns_R_free 1521 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.5100 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1549 _refine.ls_R_factor_R_free 0.1781 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1536 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1320 _refine.pdbx_overall_ESU_R_Free 0.0970 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 4.7650 _refine.overall_SU_ML 0.0590 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.0500 _refine_hist.d_res_low 32.0800 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 246 _refine_hist.number_atoms_total 1875 _refine_hist.pdbx_number_residues_total 205 _refine_hist.pdbx_B_iso_mean_ligand 28.51 _refine_hist.pdbx_B_iso_mean_solvent 44.43 _refine_hist.pdbx_number_atoms_protein 1607 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 0.019 1718 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1586 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 0.949 1.954 2333 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.657 3.002 3672 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.953 5.000 214 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 31.424 25.000 76 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 11.497 15.000 281 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 11.483 15.000 5 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.057 0.200 246 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 0.021 1956 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 389 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 1.311 3.000 3300 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 37.503 5.000 82 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 8.999 5.000 3421 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.0470 _refine_ls_shell.d_res_low 2.1000 _refine_ls_shell.number_reflns_all 1800 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 87 _refine_ls_shell.number_reflns_R_work 1713 _refine_ls_shell.percent_reflns_obs 79.8600 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2530 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1720 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5BMQ _struct.title 'Crystal structure of L,D-transpeptidase (Yku) from Stackebrandtia nassauensis' _struct.pdbx_descriptor 'ErfK/YbiS/YcfS/YnhG family protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5BMQ _struct_keywords.text 'L, D-transpeptidases, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 2 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 53 ? ALA A 65 ? TYR A 113 ALA A 125 1 ? 13 HELX_P HELX_P2 AA2 SER A 77 ? MSE A 91 ? SER A 137 MSE A 151 1 ? 15 HELX_P HELX_P3 AA3 GLY A 101 ? LYS A 113 ? GLY A 161 LYS A 173 1 ? 13 HELX_P HELX_P4 AA4 SER A 115 ? CYS A 119 ? SER A 175 CYS A 179 5 ? 5 HELX_P HELX_P5 AA5 GLU A 205 ? GLY A 209 ? GLU A 265 GLY A 269 5 ? 5 HELX_P HELX_P6 AA6 LEU A 217 ? LEU A 228 ? LEU A 277 LEU A 288 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 107 A CYS 141 1_555 ? ? ? ? ? ? ? 2.026 ? disulf2 disulf ? ? A CYS 119 SG ? ? ? 1_555 A CYS 129 SG ? ? A CYS 179 A CYS 189 1_555 ? ? ? ? ? ? ? 2.062 ? covale1 covale both ? A ARG 90 C ? ? ? 1_555 A MSE 91 N ? ? A ARG 150 A MSE 151 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale both ? A MSE 91 C ? ? ? 1_555 A GLY 92 N ? ? A MSE 151 A GLY 152 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale both ? A GLY 155 C ? ? ? 1_555 A MSE 156 N ? ? A GLY 215 A MSE 216 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale both ? A MSE 156 C ? ? ? 1_555 A ALA 157 N ? ? A MSE 216 A ALA 217 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale both ? A GLU 226 C A ? ? 1_555 A MSE 227 N ? ? A GLU 286 A MSE 287 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale both ? A GLU 226 C B ? ? 1_555 A MSE 227 N ? ? A GLU 286 A MSE 287 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale both ? A MSE 227 C ? ? ? 1_555 A LEU 228 N ? ? A MSE 287 A LEU 288 1_555 ? ? ? ? ? ? ? 1.327 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 94 A . ? GLN 154 A PRO 95 A ? PRO 155 A 1 -3.51 2 GLY 209 A . ? GLY 269 A SER 210 A ? SER 270 A 1 -8.88 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 164 ? LYS A 167 ? GLY A 224 LYS A 227 AA1 2 THR A 233 ? PHE A 237 ? THR A 293 PHE A 297 AA1 3 THR A 127 ? ASP A 131 ? THR A 187 ASP A 191 AA1 4 THR A 136 ? GLU A 141 ? THR A 196 GLU A 201 AA1 5 LYS A 144 ? ARG A 153 ? LYS A 204 ARG A 213 AA1 6 VAL A 214 ? LEU A 216 ? VAL A 274 LEU A 276 AA1 7 GLU A 194 ? THR A 198 ? GLU A 254 THR A 258 AA1 8 VAL A 182 ? ASN A 191 ? VAL A 242 ASN A 251 AA1 9 VAL A 170 ? SER A 177 ? VAL A 230 SER A 237 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TRP A 166 ? N TRP A 226 O VAL A 234 ? O VAL A 294 AA1 2 3 O THR A 233 ? O THR A 293 N VAL A 128 ? N VAL A 188 AA1 3 4 N CYS A 129 ? N CYS A 189 O TRP A 138 ? O TRP A 198 AA1 4 5 N GLU A 141 ? N GLU A 201 O LYS A 144 ? O LYS A 204 AA1 5 6 N ARG A 153 ? N ARG A 213 O ASN A 215 ? O ASN A 275 AA1 6 7 O VAL A 214 ? O VAL A 274 N GLY A 195 ? N GLY A 255 AA1 7 8 O LEU A 196 ? O LEU A 256 N GLN A 188 ? N GLN A 248 AA1 8 9 O LEU A 184 ? O LEU A 244 N HIS A 175 ? N HIS A 235 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 401 ? 12 'binding site for residue SO4 A 401' AC2 Software A DIO 402 ? 6 'binding site for residue DIO A 402' AC3 Software A SO4 403 ? 6 'binding site for residue SO4 A 403' AC4 Software A GOL 404 ? 5 'binding site for residue GOL A 404' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 GLU A 172 ? GLU A 232 . ? 7_564 ? 2 AC1 12 GLU A 172 ? GLU A 232 . ? 1_555 ? 3 AC1 12 GLU A 172 ? GLU A 232 . ? 10_655 ? 4 AC1 12 GLY A 173 ? GLY A 233 . ? 7_564 ? 5 AC1 12 GLY A 173 ? GLY A 233 . ? 1_555 ? 6 AC1 12 GLY A 173 ? GLY A 233 . ? 10_655 ? 7 AC1 12 HOH F . ? HOH A 509 . ? 10_655 ? 8 AC1 12 HOH F . ? HOH A 509 . ? 7_564 ? 9 AC1 12 HOH F . ? HOH A 509 . ? 1_555 ? 10 AC1 12 HOH F . ? HOH A 623 . ? 10_655 ? 11 AC1 12 HOH F . ? HOH A 623 . ? 7_564 ? 12 AC1 12 HOH F . ? HOH A 623 . ? 1_555 ? 13 AC2 6 MSE A 156 ? MSE A 216 . ? 1_555 ? 14 AC2 6 ALA A 157 ? ALA A 217 . ? 1_555 ? 15 AC2 6 PRO A 206 ? PRO A 266 . ? 1_555 ? 16 AC2 6 TRP A 207 ? TRP A 267 . ? 1_555 ? 17 AC2 6 PRO A 241 ? PRO A 301 . ? 1_555 ? 18 AC2 6 THR A 243 ? THR A 303 . ? 1_555 ? 19 AC3 6 HIS A 175 ? HIS A 235 . ? 1_555 ? 20 AC3 6 TRP A 176 ? TRP A 236 . ? 1_555 ? 21 AC3 6 SER A 177 ? SER A 237 . ? 1_555 ? 22 AC3 6 LYS A 178 ? LYS A 238 . ? 1_555 ? 23 AC3 6 LYS A 179 ? LYS A 239 . ? 1_555 ? 24 AC3 6 HOH F . ? HOH A 609 . ? 1_555 ? 25 AC4 5 ILE A 168 ? ILE A 228 . ? 1_555 ? 26 AC4 5 HOH F . ? HOH A 507 . ? 1_555 ? 27 AC4 5 HOH F . ? HOH A 555 . ? 1_555 ? 28 AC4 5 HOH F . ? HOH A 735 . ? 7_564 ? 29 AC4 5 HOH F . ? HOH A 739 . ? 7_564 ? # _atom_sites.entry_id 5BMQ _atom_sites.fract_transf_matrix[1][1] 0.006976 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006976 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006976 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 61 ? ? ? A . n A 1 2 TYR 2 62 ? ? ? A . n A 1 3 ALA 3 63 ? ? ? A . n A 1 4 SER 4 64 ? ? ? A . n A 1 5 ASP 5 65 ? ? ? A . n A 1 6 GLY 6 66 ? ? ? A . n A 1 7 SER 7 67 ? ? ? A . n A 1 8 ASP 8 68 ? ? ? A . n A 1 9 GLN 9 69 ? ? ? A . n A 1 10 ALA 10 70 ? ? ? A . n A 1 11 ASP 11 71 ? ? ? A . n A 1 12 LEU 12 72 ? ? ? A . n A 1 13 VAL 13 73 ? ? ? A . n A 1 14 SER 14 74 ? ? ? A . n A 1 15 ALA 15 75 ? ? ? A . n A 1 16 THR 16 76 ? ? ? A . n A 1 17 GLU 17 77 ? ? ? A . n A 1 18 GLU 18 78 ? ? ? A . n A 1 19 ALA 19 79 ? ? ? A . n A 1 20 LYS 20 80 ? ? ? A . n A 1 21 ASP 21 81 ? ? ? A . n A 1 22 GLU 22 82 ? ? ? A . n A 1 23 LYS 23 83 ? ? ? A . n A 1 24 SER 24 84 ? ? ? A . n A 1 25 GLU 25 85 ? ? ? A . n A 1 26 GLU 26 86 ? ? ? A . n A 1 27 PRO 27 87 ? ? ? A . n A 1 28 THR 28 88 ? ? ? A . n A 1 29 PRO 29 89 ? ? ? A . n A 1 30 SER 30 90 ? ? ? A . n A 1 31 GLU 31 91 ? ? ? A . n A 1 32 THR 32 92 ? ? ? A . n A 1 33 PRO 33 93 ? ? ? A . n A 1 34 THR 34 94 ? ? ? A . n A 1 35 GLU 35 95 ? ? ? A . n A 1 36 THR 36 96 ? ? ? A . n A 1 37 GLU 37 97 ? ? ? A . n A 1 38 THR 38 98 ? ? ? A . n A 1 39 ALA 39 99 99 ALA ALA A . n A 1 40 THR 40 100 100 THR THR A . n A 1 41 PRO 41 101 101 PRO PRO A . n A 1 42 THR 42 102 102 THR THR A . n A 1 43 THR 43 103 103 THR THR A . n A 1 44 ASP 44 104 104 ASP ASP A . n A 1 45 HIS 45 105 105 HIS HIS A . n A 1 46 ASP 46 106 106 ASP ASP A . n A 1 47 CYS 47 107 107 CYS CYS A . n A 1 48 GLY 48 108 108 GLY GLY A . n A 1 49 LYS 49 109 109 LYS LYS A . n A 1 50 ALA 50 110 110 ALA ALA A . n A 1 51 GLY 51 111 111 GLY GLY A . n A 1 52 GLU 52 112 112 GLU GLU A . n A 1 53 TYR 53 113 113 TYR TYR A . n A 1 54 GLN 54 114 114 GLN GLN A . n A 1 55 LYS 55 115 115 LYS LYS A . n A 1 56 ASP 56 116 116 ASP ASP A . n A 1 57 LEU 57 117 117 LEU LEU A . n A 1 58 GLU 58 118 118 GLU GLU A . n A 1 59 THR 59 119 119 THR THR A . n A 1 60 THR 60 120 120 THR THR A . n A 1 61 LEU 61 121 121 LEU LEU A . n A 1 62 ALA 62 122 122 ALA ALA A . n A 1 63 SER 63 123 123 SER SER A . n A 1 64 LEU 64 124 124 LEU LEU A . n A 1 65 ALA 65 125 125 ALA ALA A . n A 1 66 ASP 66 126 126 ASP ASP A . n A 1 67 TYR 67 127 127 TYR TYR A . n A 1 68 GLY 68 128 128 GLY GLY A . n A 1 69 THR 69 129 129 THR THR A . n A 1 70 ILE 70 130 130 ILE ILE A . n A 1 71 PHE 71 131 131 PHE PHE A . n A 1 72 ALA 72 132 132 ALA ALA A . n A 1 73 ASP 73 133 133 ASP ASP A . n A 1 74 GLY 74 134 134 GLY GLY A . n A 1 75 LYS 75 135 135 LYS LYS A . n A 1 76 GLN 76 136 136 GLN GLN A . n A 1 77 SER 77 137 137 SER SER A . n A 1 78 LYS 78 138 138 LYS LYS A . n A 1 79 GLU 79 139 139 GLU GLU A . n A 1 80 ASP 80 140 140 ASP ASP A . n A 1 81 CYS 81 141 141 CYS CYS A . n A 1 82 ALA 82 142 142 ALA ALA A . n A 1 83 ALA 83 143 143 ALA ALA A . n A 1 84 ILE 84 144 144 ILE ILE A . n A 1 85 LYS 85 145 145 LYS LYS A . n A 1 86 LYS 86 146 146 LYS LYS A . n A 1 87 PHE 87 147 147 PHE PHE A . n A 1 88 GLN 88 148 148 GLN GLN A . n A 1 89 LYS 89 149 149 LYS LYS A . n A 1 90 ARG 90 150 150 ARG ARG A . n A 1 91 MSE 91 151 151 MSE MSE A . n A 1 92 GLY 92 152 152 GLY GLY A . n A 1 93 ILE 93 153 153 ILE ILE A . n A 1 94 GLN 94 154 154 GLN GLN A . n A 1 95 PRO 95 155 155 PRO PRO A . n A 1 96 ALA 96 156 156 ALA ALA A . n A 1 97 GLU 97 157 157 GLU GLU A . n A 1 98 GLY 98 158 158 GLY GLY A . n A 1 99 TYR 99 159 159 TYR TYR A . n A 1 100 ALA 100 160 160 ALA ALA A . n A 1 101 GLY 101 161 161 GLY GLY A . n A 1 102 LYS 102 162 162 LYS LYS A . n A 1 103 LEU 103 163 163 LEU LEU A . n A 1 104 THR 104 164 164 THR THR A . n A 1 105 LEU 105 165 165 LEU LEU A . n A 1 106 ASP 106 166 166 ASP ASP A . n A 1 107 VAL 107 167 167 VAL VAL A . n A 1 108 ALA 108 168 168 ALA ALA A . n A 1 109 GLN 109 169 169 GLN GLN A . n A 1 110 ARG 110 170 170 ARG ARG A . n A 1 111 ILE 111 171 171 ILE ILE A . n A 1 112 ALA 112 172 172 ALA ALA A . n A 1 113 LYS 113 173 173 LYS LYS A . n A 1 114 SER 114 174 174 SER SER A . n A 1 115 SER 115 175 175 SER SER A . n A 1 116 PHE 116 176 176 PHE PHE A . n A 1 117 ASP 117 177 177 ASP ASP A . n A 1 118 LYS 118 178 178 LYS LYS A . n A 1 119 CYS 119 179 179 CYS CYS A . n A 1 120 GLN 120 180 180 GLN GLN A . n A 1 121 GLU 121 181 181 GLU GLU A . n A 1 122 ALA 122 182 182 ALA ALA A . n A 1 123 LYS 123 183 183 LYS LYS A . n A 1 124 LYS 124 184 184 LYS LYS A . n A 1 125 GLY 125 185 185 GLY GLY A . n A 1 126 LYS 126 186 186 LYS LYS A . n A 1 127 THR 127 187 187 THR THR A . n A 1 128 VAL 128 188 188 VAL VAL A . n A 1 129 CYS 129 189 189 CYS CYS A . n A 1 130 VAL 130 190 190 VAL VAL A . n A 1 131 ASP 131 191 191 ASP ASP A . n A 1 132 LEU 132 192 192 LEU LEU A . n A 1 133 THR 133 193 193 THR THR A . n A 1 134 HIS 134 194 194 HIS HIS A . n A 1 135 GLN 135 195 195 GLN GLN A . n A 1 136 THR 136 196 196 THR THR A . n A 1 137 LEU 137 197 197 LEU LEU A . n A 1 138 TRP 138 198 198 TRP TRP A . n A 1 139 VAL 139 199 199 VAL VAL A . n A 1 140 VAL 140 200 200 VAL VAL A . n A 1 141 GLU 141 201 201 GLU GLU A . n A 1 142 ASP 142 202 202 ASP ASP A . n A 1 143 GLY 143 203 203 GLY GLY A . n A 1 144 LYS 144 204 204 LYS LYS A . n A 1 145 ARG 145 205 205 ARG ARG A . n A 1 146 ILE 146 206 206 ILE ILE A . n A 1 147 PHE 147 207 207 PHE PHE A . n A 1 148 GLU 148 208 208 GLU GLU A . n A 1 149 PRO 149 209 209 PRO PRO A . n A 1 150 THR 150 210 210 THR THR A . n A 1 151 VAL 151 211 211 VAL VAL A . n A 1 152 VAL 152 212 212 VAL VAL A . n A 1 153 ARG 153 213 213 ARG ARG A . n A 1 154 THR 154 214 214 THR THR A . n A 1 155 GLY 155 215 215 GLY GLY A . n A 1 156 MSE 156 216 216 MSE MSE A . n A 1 157 ALA 157 217 217 ALA ALA A . n A 1 158 GLY 158 218 218 GLY GLY A . n A 1 159 TYR 159 219 219 TYR TYR A . n A 1 160 ALA 160 220 220 ALA ALA A . n A 1 161 THR 161 221 221 THR THR A . n A 1 162 GLN 162 222 222 GLN GLN A . n A 1 163 PRO 163 223 223 PRO PRO A . n A 1 164 GLY 164 224 224 GLY GLY A . n A 1 165 ALA 165 225 225 ALA ALA A . n A 1 166 TRP 166 226 226 TRP TRP A . n A 1 167 LYS 167 227 227 LYS LYS A . n A 1 168 ILE 168 228 228 ILE ILE A . n A 1 169 PHE 169 229 229 PHE PHE A . n A 1 170 VAL 170 230 230 VAL VAL A . n A 1 171 LYS 171 231 231 LYS LYS A . n A 1 172 GLU 172 232 232 GLU GLU A . n A 1 173 GLY 173 233 233 GLY GLY A . n A 1 174 THR 174 234 234 THR THR A . n A 1 175 HIS 175 235 235 HIS HIS A . n A 1 176 TRP 176 236 236 TRP TRP A . n A 1 177 SER 177 237 237 SER SER A . n A 1 178 LYS 178 238 238 LYS LYS A . n A 1 179 LYS 179 239 239 LYS LYS A . n A 1 180 TYR 180 240 240 TYR TYR A . n A 1 181 LYS 181 241 241 LYS LYS A . n A 1 182 VAL 182 242 242 VAL VAL A . n A 1 183 TRP 183 243 243 TRP TRP A . n A 1 184 LEU 184 244 244 LEU LEU A . n A 1 185 PRO 185 245 245 PRO PRO A . n A 1 186 TYR 186 246 246 TYR TYR A . n A 1 187 TRP 187 247 247 TRP TRP A . n A 1 188 GLN 188 248 248 GLN GLN A . n A 1 189 ASN 189 249 249 ASN ASN A . n A 1 190 PHE 190 250 250 PHE PHE A . n A 1 191 ASN 191 251 251 ASN ASN A . n A 1 192 ASN 192 252 252 ASN ASN A . n A 1 193 GLY 193 253 253 GLY GLY A . n A 1 194 GLU 194 254 254 GLU GLU A . n A 1 195 GLY 195 255 255 GLY GLY A . n A 1 196 LEU 196 256 256 LEU LEU A . n A 1 197 HIS 197 257 257 HIS HIS A . n A 1 198 THR 198 258 258 THR THR A . n A 1 199 THR 199 259 259 THR THR A . n A 1 200 THR 200 260 260 THR THR A . n A 1 201 THR 201 261 261 THR THR A . n A 1 202 TYR 202 262 262 TYR TYR A . n A 1 203 ILE 203 263 263 ILE ILE A . n A 1 204 HIS 204 264 264 HIS HIS A . n A 1 205 GLU 205 265 265 GLU GLU A . n A 1 206 PRO 206 266 266 PRO PRO A . n A 1 207 TRP 207 267 267 TRP TRP A . n A 1 208 ILE 208 268 268 ILE ILE A . n A 1 209 GLY 209 269 269 GLY GLY A . n A 1 210 SER 210 270 270 SER SER A . n A 1 211 HIS 211 271 271 HIS HIS A . n A 1 212 GLY 212 272 272 GLY GLY A . n A 1 213 CYS 213 273 273 CYS CYS A . n A 1 214 VAL 214 274 274 VAL VAL A . n A 1 215 ASN 215 275 275 ASN ASN A . n A 1 216 LEU 216 276 276 LEU LEU A . n A 1 217 LEU 217 277 277 LEU LEU A . n A 1 218 PRO 218 278 278 PRO PRO A . n A 1 219 SER 219 279 279 SER SER A . n A 1 220 ASP 220 280 280 ASP ASP A . n A 1 221 SER 221 281 281 SER SER A . n A 1 222 LYS 222 282 282 LYS LYS A . n A 1 223 LYS 223 283 283 LYS LYS A . n A 1 224 LEU 224 284 284 LEU LEU A . n A 1 225 TYR 225 285 285 TYR TYR A . n A 1 226 GLU 226 286 286 GLU GLU A . n A 1 227 MSE 227 287 287 MSE MSE A . n A 1 228 LEU 228 288 288 LEU LEU A . n A 1 229 ASP 229 289 289 ASP ASP A . n A 1 230 PHE 230 290 290 PHE PHE A . n A 1 231 GLY 231 291 291 GLY GLY A . n A 1 232 ASP 232 292 292 ASP ASP A . n A 1 233 THR 233 293 293 THR THR A . n A 1 234 VAL 234 294 294 VAL VAL A . n A 1 235 GLN 235 295 295 GLN GLN A . n A 1 236 VAL 236 296 296 VAL VAL A . n A 1 237 PHE 237 297 297 PHE PHE A . n A 1 238 GLY 238 298 298 GLY GLY A . n A 1 239 ASN 239 299 299 ASN ASN A . n A 1 240 ARG 240 300 300 ARG ARG A . n A 1 241 PRO 241 301 301 PRO PRO A . n A 1 242 GLY 242 302 302 GLY GLY A . n A 1 243 THR 243 303 303 THR THR A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 401 401 SO4 SO4 A . C 3 DIO 1 402 402 DIO DIO A . D 2 SO4 1 403 1 SO4 SO4 A . E 4 GOL 1 404 1 GOL GOL A . F 5 HOH 1 501 213 HOH HOH A . F 5 HOH 2 502 1 HOH HOH A . F 5 HOH 3 503 58 HOH HOH A . F 5 HOH 4 504 47 HOH HOH A . F 5 HOH 5 505 125 HOH HOH A . F 5 HOH 6 506 147 HOH HOH A . F 5 HOH 7 507 40 HOH HOH A . F 5 HOH 8 508 174 HOH HOH A . F 5 HOH 9 509 216 HOH HOH A . F 5 HOH 10 510 68 HOH HOH A . F 5 HOH 11 511 214 HOH HOH A . F 5 HOH 12 512 82 HOH HOH A . F 5 HOH 13 513 10 HOH HOH A . F 5 HOH 14 514 96 HOH HOH A . F 5 HOH 15 515 85 HOH HOH A . F 5 HOH 16 516 3 HOH HOH A . F 5 HOH 17 517 65 HOH HOH A . F 5 HOH 18 518 61 HOH HOH A . F 5 HOH 19 519 128 HOH HOH A . F 5 HOH 20 520 87 HOH HOH A . F 5 HOH 21 521 35 HOH HOH A . F 5 HOH 22 522 164 HOH HOH A . F 5 HOH 23 523 101 HOH HOH A . F 5 HOH 24 524 107 HOH HOH A . F 5 HOH 25 525 79 HOH HOH A . F 5 HOH 26 526 239 HOH HOH A . F 5 HOH 27 527 201 HOH HOH A . F 5 HOH 28 528 2 HOH HOH A . F 5 HOH 29 529 8 HOH HOH A . F 5 HOH 30 530 4 HOH HOH A . F 5 HOH 31 531 181 HOH HOH A . F 5 HOH 32 532 217 HOH HOH A . F 5 HOH 33 533 25 HOH HOH A . F 5 HOH 34 534 50 HOH HOH A . F 5 HOH 35 535 233 HOH HOH A . F 5 HOH 36 536 11 HOH HOH A . F 5 HOH 37 537 221 HOH HOH A . F 5 HOH 38 538 6 HOH HOH A . F 5 HOH 39 539 18 HOH HOH A . F 5 HOH 40 540 154 HOH HOH A . F 5 HOH 41 541 67 HOH HOH A . F 5 HOH 42 542 76 HOH HOH A . F 5 HOH 43 543 77 HOH HOH A . F 5 HOH 44 544 9 HOH HOH A . F 5 HOH 45 545 72 HOH HOH A . F 5 HOH 46 546 33 HOH HOH A . F 5 HOH 47 547 43 HOH HOH A . F 5 HOH 48 548 195 HOH HOH A . F 5 HOH 49 549 138 HOH HOH A . F 5 HOH 50 550 215 HOH HOH A . F 5 HOH 51 551 13 HOH HOH A . F 5 HOH 52 552 95 HOH HOH A . F 5 HOH 53 553 145 HOH HOH A . F 5 HOH 54 554 218 HOH HOH A . F 5 HOH 55 555 56 HOH HOH A . F 5 HOH 56 556 7 HOH HOH A . F 5 HOH 57 557 38 HOH HOH A . F 5 HOH 58 558 53 HOH HOH A . F 5 HOH 59 559 71 HOH HOH A . F 5 HOH 60 560 37 HOH HOH A . F 5 HOH 61 561 22 HOH HOH A . F 5 HOH 62 562 158 HOH HOH A . F 5 HOH 63 563 113 HOH HOH A . F 5 HOH 64 564 150 HOH HOH A . F 5 HOH 65 565 229 HOH HOH A . F 5 HOH 66 566 186 HOH HOH A . F 5 HOH 67 567 140 HOH HOH A . F 5 HOH 68 568 86 HOH HOH A . F 5 HOH 69 569 98 HOH HOH A . F 5 HOH 70 570 185 HOH HOH A . F 5 HOH 71 571 131 HOH HOH A . F 5 HOH 72 572 81 HOH HOH A . F 5 HOH 73 573 104 HOH HOH A . F 5 HOH 74 574 166 HOH HOH A . F 5 HOH 75 575 136 HOH HOH A . F 5 HOH 76 576 91 HOH HOH A . F 5 HOH 77 577 137 HOH HOH A . F 5 HOH 78 578 149 HOH HOH A . F 5 HOH 79 579 152 HOH HOH A . F 5 HOH 80 580 44 HOH HOH A . F 5 HOH 81 581 41 HOH HOH A . F 5 HOH 82 582 80 HOH HOH A . F 5 HOH 83 583 52 HOH HOH A . F 5 HOH 84 584 163 HOH HOH A . F 5 HOH 85 585 12 HOH HOH A . F 5 HOH 86 586 83 HOH HOH A . F 5 HOH 87 587 90 HOH HOH A . F 5 HOH 88 588 75 HOH HOH A . F 5 HOH 89 589 74 HOH HOH A . F 5 HOH 90 590 60 HOH HOH A . F 5 HOH 91 591 192 HOH HOH A . F 5 HOH 92 592 162 HOH HOH A . F 5 HOH 93 593 31 HOH HOH A . F 5 HOH 94 594 151 HOH HOH A . F 5 HOH 95 595 220 HOH HOH A . F 5 HOH 96 596 94 HOH HOH A . F 5 HOH 97 597 51 HOH HOH A . F 5 HOH 98 598 241 HOH HOH A . F 5 HOH 99 599 39 HOH HOH A . F 5 HOH 100 600 194 HOH HOH A . F 5 HOH 101 601 5 HOH HOH A . F 5 HOH 102 602 172 HOH HOH A . F 5 HOH 103 603 54 HOH HOH A . F 5 HOH 104 604 29 HOH HOH A . F 5 HOH 105 605 169 HOH HOH A . F 5 HOH 106 606 144 HOH HOH A . F 5 HOH 107 607 189 HOH HOH A . F 5 HOH 108 608 132 HOH HOH A . F 5 HOH 109 609 240 HOH HOH A . F 5 HOH 110 610 219 HOH HOH A . F 5 HOH 111 611 64 HOH HOH A . F 5 HOH 112 612 63 HOH HOH A . F 5 HOH 113 613 165 HOH HOH A . F 5 HOH 114 614 48 HOH HOH A . F 5 HOH 115 615 17 HOH HOH A . F 5 HOH 116 616 184 HOH HOH A . F 5 HOH 117 617 69 HOH HOH A . F 5 HOH 118 618 156 HOH HOH A . F 5 HOH 119 619 26 HOH HOH A . F 5 HOH 120 620 59 HOH HOH A . F 5 HOH 121 621 23 HOH HOH A . F 5 HOH 122 622 118 HOH HOH A . F 5 HOH 123 623 49 HOH HOH A . F 5 HOH 124 624 105 HOH HOH A . F 5 HOH 125 625 115 HOH HOH A . F 5 HOH 126 626 210 HOH HOH A . F 5 HOH 127 627 159 HOH HOH A . F 5 HOH 128 628 130 HOH HOH A . F 5 HOH 129 629 175 HOH HOH A . F 5 HOH 130 630 42 HOH HOH A . F 5 HOH 131 631 89 HOH HOH A . F 5 HOH 132 632 55 HOH HOH A . F 5 HOH 133 633 200 HOH HOH A . F 5 HOH 134 634 244 HOH HOH A . F 5 HOH 135 635 15 HOH HOH A . F 5 HOH 136 636 24 HOH HOH A . F 5 HOH 137 637 188 HOH HOH A . F 5 HOH 138 638 45 HOH HOH A . F 5 HOH 139 639 209 HOH HOH A . F 5 HOH 140 640 116 HOH HOH A . F 5 HOH 141 641 143 HOH HOH A . F 5 HOH 142 642 92 HOH HOH A . F 5 HOH 143 643 117 HOH HOH A . F 5 HOH 144 644 180 HOH HOH A . F 5 HOH 145 645 84 HOH HOH A . F 5 HOH 146 646 155 HOH HOH A . F 5 HOH 147 647 157 HOH HOH A . F 5 HOH 148 648 19 HOH HOH A . F 5 HOH 149 649 245 HOH HOH A . F 5 HOH 150 650 170 HOH HOH A . F 5 HOH 151 651 161 HOH HOH A . F 5 HOH 152 652 179 HOH HOH A . F 5 HOH 153 653 121 HOH HOH A . F 5 HOH 154 654 28 HOH HOH A . F 5 HOH 155 655 173 HOH HOH A . F 5 HOH 156 656 21 HOH HOH A . F 5 HOH 157 657 34 HOH HOH A . F 5 HOH 158 658 127 HOH HOH A . F 5 HOH 159 659 123 HOH HOH A . F 5 HOH 160 660 102 HOH HOH A . F 5 HOH 161 661 177 HOH HOH A . F 5 HOH 162 662 196 HOH HOH A . F 5 HOH 163 663 226 HOH HOH A . F 5 HOH 164 664 211 HOH HOH A . F 5 HOH 165 665 110 HOH HOH A . F 5 HOH 166 666 193 HOH HOH A . F 5 HOH 167 667 16 HOH HOH A . F 5 HOH 168 668 109 HOH HOH A . F 5 HOH 169 669 222 HOH HOH A . F 5 HOH 170 670 124 HOH HOH A . F 5 HOH 171 671 224 HOH HOH A . F 5 HOH 172 672 232 HOH HOH A . F 5 HOH 173 673 160 HOH HOH A . F 5 HOH 174 674 20 HOH HOH A . F 5 HOH 175 675 97 HOH HOH A . F 5 HOH 176 676 225 HOH HOH A . F 5 HOH 177 677 103 HOH HOH A . F 5 HOH 178 678 134 HOH HOH A . F 5 HOH 179 679 183 HOH HOH A . F 5 HOH 180 680 36 HOH HOH A . F 5 HOH 181 681 238 HOH HOH A . F 5 HOH 182 682 231 HOH HOH A . F 5 HOH 183 683 135 HOH HOH A . F 5 HOH 184 684 57 HOH HOH A . F 5 HOH 185 685 122 HOH HOH A . F 5 HOH 186 686 73 HOH HOH A . F 5 HOH 187 687 114 HOH HOH A . F 5 HOH 188 688 230 HOH HOH A . F 5 HOH 189 689 30 HOH HOH A . F 5 HOH 190 690 167 HOH HOH A . F 5 HOH 191 691 246 HOH HOH A . F 5 HOH 192 692 205 HOH HOH A . F 5 HOH 193 693 197 HOH HOH A . F 5 HOH 194 694 139 HOH HOH A . F 5 HOH 195 695 206 HOH HOH A . F 5 HOH 196 696 78 HOH HOH A . F 5 HOH 197 697 32 HOH HOH A . F 5 HOH 198 698 176 HOH HOH A . F 5 HOH 199 699 178 HOH HOH A . F 5 HOH 200 700 198 HOH HOH A . F 5 HOH 201 701 204 HOH HOH A . F 5 HOH 202 702 212 HOH HOH A . F 5 HOH 203 703 133 HOH HOH A . F 5 HOH 204 704 203 HOH HOH A . F 5 HOH 205 705 242 HOH HOH A . F 5 HOH 206 706 171 HOH HOH A . F 5 HOH 207 707 182 HOH HOH A . F 5 HOH 208 708 111 HOH HOH A . F 5 HOH 209 709 112 HOH HOH A . F 5 HOH 210 710 108 HOH HOH A . F 5 HOH 211 711 88 HOH HOH A . F 5 HOH 212 712 146 HOH HOH A . F 5 HOH 213 713 235 HOH HOH A . F 5 HOH 214 714 141 HOH HOH A . F 5 HOH 215 715 208 HOH HOH A . F 5 HOH 216 716 202 HOH HOH A . F 5 HOH 217 717 191 HOH HOH A . F 5 HOH 218 718 70 HOH HOH A . F 5 HOH 219 719 228 HOH HOH A . F 5 HOH 220 720 120 HOH HOH A . F 5 HOH 221 721 237 HOH HOH A . F 5 HOH 222 722 119 HOH HOH A . F 5 HOH 223 723 27 HOH HOH A . F 5 HOH 224 724 93 HOH HOH A . F 5 HOH 225 725 126 HOH HOH A . F 5 HOH 226 726 227 HOH HOH A . F 5 HOH 227 727 168 HOH HOH A . F 5 HOH 228 728 129 HOH HOH A . F 5 HOH 229 729 148 HOH HOH A . F 5 HOH 230 730 187 HOH HOH A . F 5 HOH 231 731 207 HOH HOH A . F 5 HOH 232 732 100 HOH HOH A . F 5 HOH 233 733 142 HOH HOH A . F 5 HOH 234 734 153 HOH HOH A . F 5 HOH 235 735 46 HOH HOH A . F 5 HOH 236 736 99 HOH HOH A . F 5 HOH 237 737 66 HOH HOH A . F 5 HOH 238 738 106 HOH HOH A . F 5 HOH 239 739 14 HOH HOH A . F 5 HOH 240 740 243 HOH HOH A . F 5 HOH 241 741 223 HOH HOH A . F 5 HOH 242 742 236 HOH HOH A . F 5 HOH 243 743 199 HOH HOH A . F 5 HOH 244 744 234 HOH HOH A . F 5 HOH 245 745 62 HOH HOH A . F 5 HOH 246 746 190 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 91 A MSE 151 ? MET 'modified residue' 2 A MSE 156 A MSE 216 ? MET 'modified residue' 3 A MSE 227 A MSE 287 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4650 ? 1 MORE -121 ? 1 'SSA (A^2)' 29040 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_564 -z+1/2,-x+1,y-1/2 0.0000000000 0.0000000000 -1.0000000000 71.6780000000 -1.0000000000 0.0000000000 0.0000000000 143.3560000000 0.0000000000 1.0000000000 0.0000000000 -71.6780000000 3 'crystal symmetry operation' 10_655 -y+1,z+1/2,-x+1/2 0.0000000000 -1.0000000000 0.0000000000 143.3560000000 0.0000000000 0.0000000000 1.0000000000 71.6780000000 -1.0000000000 0.0000000000 0.0000000000 71.6780000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 401 ? B SO4 . 2 1 A SO4 401 ? B SO4 . 3 1 A HOH 698 ? F HOH . 4 1 A HOH 741 ? F HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2015-06-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 5 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? SBC-Collect ? ? ? . 6 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 126 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -142.73 _pdbx_validate_torsion.psi 14.20 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 745 ? 6.63 . 2 1 O ? A HOH 746 ? 6.88 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 184 ? CG ? A LYS 124 CG 2 1 Y 1 A LYS 184 ? CD ? A LYS 124 CD 3 1 Y 1 A LYS 184 ? CE ? A LYS 124 CE 4 1 Y 1 A LYS 184 ? NZ ? A LYS 124 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 61 ? A ALA 1 2 1 Y 1 A TYR 62 ? A TYR 2 3 1 Y 1 A ALA 63 ? A ALA 3 4 1 Y 1 A SER 64 ? A SER 4 5 1 Y 1 A ASP 65 ? A ASP 5 6 1 Y 1 A GLY 66 ? A GLY 6 7 1 Y 1 A SER 67 ? A SER 7 8 1 Y 1 A ASP 68 ? A ASP 8 9 1 Y 1 A GLN 69 ? A GLN 9 10 1 Y 1 A ALA 70 ? A ALA 10 11 1 Y 1 A ASP 71 ? A ASP 11 12 1 Y 1 A LEU 72 ? A LEU 12 13 1 Y 1 A VAL 73 ? A VAL 13 14 1 Y 1 A SER 74 ? A SER 14 15 1 Y 1 A ALA 75 ? A ALA 15 16 1 Y 1 A THR 76 ? A THR 16 17 1 Y 1 A GLU 77 ? A GLU 17 18 1 Y 1 A GLU 78 ? A GLU 18 19 1 Y 1 A ALA 79 ? A ALA 19 20 1 Y 1 A LYS 80 ? A LYS 20 21 1 Y 1 A ASP 81 ? A ASP 21 22 1 Y 1 A GLU 82 ? A GLU 22 23 1 Y 1 A LYS 83 ? A LYS 23 24 1 Y 1 A SER 84 ? A SER 24 25 1 Y 1 A GLU 85 ? A GLU 25 26 1 Y 1 A GLU 86 ? A GLU 26 27 1 Y 1 A PRO 87 ? A PRO 27 28 1 Y 1 A THR 88 ? A THR 28 29 1 Y 1 A PRO 89 ? A PRO 29 30 1 Y 1 A SER 90 ? A SER 30 31 1 Y 1 A GLU 91 ? A GLU 31 32 1 Y 1 A THR 92 ? A THR 32 33 1 Y 1 A PRO 93 ? A PRO 33 34 1 Y 1 A THR 94 ? A THR 34 35 1 Y 1 A GLU 95 ? A GLU 35 36 1 Y 1 A THR 96 ? A THR 36 37 1 Y 1 A GLU 97 ? A GLU 37 38 1 Y 1 A THR 98 ? A THR 38 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 '1,4-DIETHYLENE DIOXIDE' DIO 4 GLYCEROL GOL 5 water HOH #