HEADER ISOMERASE 23-MAY-15 5BMW TITLE CRYSTAL STRUCTURE OF T75V MUTANT OF TRIOSEPHOSPHATE ISOMERASE FROM TITLE 2 PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM,TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: TPI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AA200; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS TIM BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BANDYOPADHYAY,M.R.N.MURTHY,H.BALARAM,P.BALARAM REVDAT 5 08-NOV-23 5BMW 1 REMARK LINK REVDAT 4 28-OCT-15 5BMW 1 JRNL REVDAT 3 12-AUG-15 5BMW 1 REMARK REVDAT 2 05-AUG-15 5BMW 1 JRNL REVDAT 1 29-JUL-15 5BMW 0 JRNL AUTH D.BANDYOPADHYAY,M.R.MURTHY,H.BALARAM,P.BALARAM JRNL TITL PROBING THE ROLE OF HIGHLY CONSERVED RESIDUES IN JRNL TITL 2 TRIOSEPHOSPHATE ISOMERASE - ANALYSIS OF SITE SPECIFIC JRNL TITL 3 MUTANTS AT POSITIONS 64 AND 75 IN THE PLASMODIAL ENZYME JRNL REF FEBS J. V. 282 3863 2015 JRNL REFN ISSN 1742-464X JRNL PMID 26206206 JRNL DOI 10.1111/FEBS.13384 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1816 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3859 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 483 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.335 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3985 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3814 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5381 ; 1.802 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8763 ; 1.033 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 6.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;39.944 ;25.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 705 ;11.758 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;11.258 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 621 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4532 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 910 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1978 ; 0.896 ; 0.977 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1977 ; 0.890 ; 0.977 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2471 ; 1.303 ; 1.460 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5BMW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36392 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.859 REMARK 200 RESOLUTION RANGE LOW (A) : 73.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.15600 REMARK 200 R SYM FOR SHELL (I) : 0.15600 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 1O5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 1450, 100 MM MES BUFFER, 10 MM REMARK 280 CALCIUM CHLORIDE, 0.5 MM EDTA, 0.5 MM DTT, 0.5 MM SODIUM AZIDE, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.01000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 84 NZ REMARK 470 LYS A 118 NZ REMARK 470 GLN A 136 OE1 NE2 REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 LYS A 186 CE NZ REMARK 470 LYS A 190 CE NZ REMARK 470 LYS A 193 CE NZ REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 LYS B 53 CE NZ REMARK 470 LYS B 100 CD CE NZ REMARK 470 TYR B 101 CE1 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 LYS B 118 CD CE NZ REMARK 470 LYS B 145 CE NZ REMARK 470 LYS B 186 CE NZ REMARK 470 LYS B 190 CE NZ REMARK 470 LYS B 193 CE NZ REMARK 470 LYS B 199 CD CE NZ REMARK 470 GLN B 203 CD OE1 NE2 REMARK 470 GLN B 222 CG CD OE1 NE2 REMARK 470 GLU B 224 CD OE1 OE2 REMARK 470 LYS B 237 NZ REMARK 470 GLU B 238 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 510 O HOH A 527 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -137.25 46.45 REMARK 500 CYS A 13 71.35 -101.85 REMARK 500 ASP A 155 -85.43 -105.23 REMARK 500 LYS B 12 -138.29 50.14 REMARK 500 CYS B 13 70.02 -100.80 REMARK 500 ASN B 156 114.18 -165.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 5 OH REMARK 620 2 ILE A 221 O 88.0 REMARK 620 3 GLN A 223 O 146.6 100.5 REMARK 620 4 ILE A 226 O 119.1 98.8 91.7 REMARK 620 5 HOH A 461 O 78.8 161.6 84.3 98.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 309 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 248 O REMARK 620 2 EDO A 305 O1 92.5 REMARK 620 3 EDO A 305 O2 84.9 68.1 REMARK 620 4 HOH A 511 O 95.6 136.7 70.4 REMARK 620 5 GLN B 223 OE1 44.3 87.4 42.9 70.0 REMARK 620 6 HOH B 485 O 78.0 151.5 136.2 71.6 103.1 REMARK 620 7 HOH B 493 O 92.3 71.0 138.8 150.5 131.2 82.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 5 OH REMARK 620 2 ILE B 221 O 83.4 REMARK 620 3 GLN B 223 O 151.1 96.4 REMARK 620 4 ILE B 226 O 114.3 95.0 94.6 REMARK 620 5 HOH B 502 O 88.2 169.4 94.1 82.5 REMARK 620 6 HOH B 525 O 69.0 95.4 82.2 169.5 87.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O5X RELATED DB: PDB REMARK 900 CONTAINS THE NATIVE PROTEIN COMPLEXED WITH 2-PHOSPHOGLYCERATE REMARK 900 RELATED ID: 1YDV RELATED DB: PDB REMARK 900 CONTAINS THE UNLIGANDED NATIVE PROTEIN REMARK 900 RELATED ID: 4ZZ9 RELATED DB: PDB REMARK 900 RELATED ID: 5BMX RELATED DB: PDB REMARK 900 RELATED ID: 5BNK RELATED DB: PDB DBREF 5BMW A 1 248 UNP Q07412 TPIS_PLAFA 1 248 DBREF 5BMW B 1 248 UNP Q07412 TPIS_PLAFA 1 248 SEQADV 5BMW VAL A 75 UNP Q07412 THR 75 ENGINEERED MUTATION SEQADV 5BMW VAL A 163 UNP Q07412 ALA 163 ENGINEERED MUTATION SEQADV 5BMW VAL B 75 UNP Q07412 THR 75 ENGINEERED MUTATION SEQADV 5BMW VAL B 163 UNP Q07412 ALA 163 ENGINEERED MUTATION SEQRES 1 A 248 MET ALA ARG LYS TYR PHE VAL ALA ALA ASN TRP LYS CYS SEQRES 2 A 248 ASN GLY THR LEU GLU SER ILE LYS SER LEU THR ASN SER SEQRES 3 A 248 PHE ASN ASN LEU ASP PHE ASP PRO SER LYS LEU ASP VAL SEQRES 4 A 248 VAL VAL PHE PRO VAL SER VAL HIS TYR ASP HIS THR ARG SEQRES 5 A 248 LYS LEU LEU GLN SER LYS PHE SER THR GLY ILE GLN ASN SEQRES 6 A 248 VAL SER LYS PHE GLY ASN GLY SER TYR VAL GLY GLU VAL SEQRES 7 A 248 SER ALA GLU ILE ALA LYS ASP LEU ASN ILE GLU TYR VAL SEQRES 8 A 248 ILE ILE GLY HIS PHE GLU ARG ARG LYS TYR PHE HIS GLU SEQRES 9 A 248 THR ASP GLU ASP VAL ARG GLU LYS LEU GLN ALA SER LEU SEQRES 10 A 248 LYS ASN ASN LEU LYS ALA VAL VAL CYS PHE GLY GLU SER SEQRES 11 A 248 LEU GLU GLN ARG GLU GLN ASN LYS THR ILE GLU VAL ILE SEQRES 12 A 248 THR LYS GLN VAL LYS ALA PHE VAL ASP LEU ILE ASP ASN SEQRES 13 A 248 PHE ASP ASN VAL ILE LEU VAL TYR GLU PRO LEU TRP ALA SEQRES 14 A 248 ILE GLY THR GLY LYS THR ALA THR PRO GLU GLN ALA GLN SEQRES 15 A 248 LEU VAL HIS LYS GLU ILE ARG LYS ILE VAL LYS ASP THR SEQRES 16 A 248 CYS GLY GLU LYS GLN ALA ASN GLN ILE ARG ILE LEU TYR SEQRES 17 A 248 GLY GLY SER VAL ASN THR GLU ASN CYS SER SER LEU ILE SEQRES 18 A 248 GLN GLN GLU ASP ILE ASP GLY PHE LEU VAL GLY ASN ALA SEQRES 19 A 248 SER LEU LYS GLU SER PHE VAL ASP ILE ILE LYS SER ALA SEQRES 20 A 248 MET SEQRES 1 B 248 MET ALA ARG LYS TYR PHE VAL ALA ALA ASN TRP LYS CYS SEQRES 2 B 248 ASN GLY THR LEU GLU SER ILE LYS SER LEU THR ASN SER SEQRES 3 B 248 PHE ASN ASN LEU ASP PHE ASP PRO SER LYS LEU ASP VAL SEQRES 4 B 248 VAL VAL PHE PRO VAL SER VAL HIS TYR ASP HIS THR ARG SEQRES 5 B 248 LYS LEU LEU GLN SER LYS PHE SER THR GLY ILE GLN ASN SEQRES 6 B 248 VAL SER LYS PHE GLY ASN GLY SER TYR VAL GLY GLU VAL SEQRES 7 B 248 SER ALA GLU ILE ALA LYS ASP LEU ASN ILE GLU TYR VAL SEQRES 8 B 248 ILE ILE GLY HIS PHE GLU ARG ARG LYS TYR PHE HIS GLU SEQRES 9 B 248 THR ASP GLU ASP VAL ARG GLU LYS LEU GLN ALA SER LEU SEQRES 10 B 248 LYS ASN ASN LEU LYS ALA VAL VAL CYS PHE GLY GLU SER SEQRES 11 B 248 LEU GLU GLN ARG GLU GLN ASN LYS THR ILE GLU VAL ILE SEQRES 12 B 248 THR LYS GLN VAL LYS ALA PHE VAL ASP LEU ILE ASP ASN SEQRES 13 B 248 PHE ASP ASN VAL ILE LEU VAL TYR GLU PRO LEU TRP ALA SEQRES 14 B 248 ILE GLY THR GLY LYS THR ALA THR PRO GLU GLN ALA GLN SEQRES 15 B 248 LEU VAL HIS LYS GLU ILE ARG LYS ILE VAL LYS ASP THR SEQRES 16 B 248 CYS GLY GLU LYS GLN ALA ASN GLN ILE ARG ILE LEU TYR SEQRES 17 B 248 GLY GLY SER VAL ASN THR GLU ASN CYS SER SER LEU ILE SEQRES 18 B 248 GLN GLN GLU ASP ILE ASP GLY PHE LEU VAL GLY ASN ALA SEQRES 19 B 248 SER LEU LYS GLU SER PHE VAL ASP ILE ILE LYS SER ALA SEQRES 20 B 248 MET HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET NA A 307 1 HET MES A 308 12 HET CA A 309 1 HET EDO B 301 4 HET EDO B 302 4 HET NA B 303 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 8(C2 H6 O2) FORMUL 9 NA 2(NA 1+) FORMUL 10 MES C6 H13 N O4 S FORMUL 11 CA CA 2+ FORMUL 15 HOH *483(H2 O) HELIX 1 AA1 THR A 16 ASN A 29 1 14 HELIX 2 AA2 VAL A 44 VAL A 46 5 3 HELIX 3 AA3 HIS A 47 LEU A 55 1 9 HELIX 4 AA4 SER A 79 LEU A 86 1 8 HELIX 5 AA5 HIS A 95 PHE A 102 1 8 HELIX 6 AA6 THR A 105 ASN A 119 1 15 HELIX 7 AA7 SER A 130 GLN A 136 1 7 HELIX 8 AA8 LYS A 138 ALA A 149 1 12 HELIX 9 AA9 PHE A 150 ILE A 154 5 5 HELIX 10 AB1 PRO A 166 ILE A 170 5 5 HELIX 11 AB2 THR A 177 GLY A 197 1 21 HELIX 12 AB3 GLY A 197 ILE A 204 1 8 HELIX 13 AB4 ASN A 216 GLN A 222 1 7 HELIX 14 AB5 GLY A 232 GLU A 238 5 7 HELIX 15 AB6 SER A 239 ALA A 247 1 9 HELIX 16 AB7 THR B 16 ASN B 29 1 14 HELIX 17 AB8 VAL B 44 VAL B 46 5 3 HELIX 18 AB9 HIS B 47 LEU B 55 1 9 HELIX 19 AC1 SER B 79 LEU B 86 1 8 HELIX 20 AC2 HIS B 95 PHE B 102 1 8 HELIX 21 AC3 THR B 105 ASN B 119 1 15 HELIX 22 AC4 SER B 130 GLN B 136 1 7 HELIX 23 AC5 LYS B 138 ALA B 149 1 12 HELIX 24 AC6 PHE B 150 ILE B 154 5 5 HELIX 25 AC7 PRO B 166 ILE B 170 5 5 HELIX 26 AC8 THR B 177 GLY B 197 1 21 HELIX 27 AC9 GLY B 197 ILE B 204 1 8 HELIX 28 AD1 ASN B 216 GLN B 222 1 7 HELIX 29 AD2 GLY B 232 GLU B 238 5 7 HELIX 30 AD3 SER B 239 ALA B 247 1 9 SHEET 1 AA1 9 TYR A 5 ASN A 10 0 SHEET 2 AA1 9 LEU A 37 PHE A 42 1 O VAL A 40 N ALA A 9 SHEET 3 AA1 9 SER A 60 ILE A 63 1 O SER A 60 N VAL A 39 SHEET 4 AA1 9 TYR A 90 ILE A 93 1 O TYR A 90 N ILE A 63 SHEET 5 AA1 9 LYS A 122 PHE A 127 1 O VAL A 124 N VAL A 91 SHEET 6 AA1 9 VAL A 160 TYR A 164 1 O ILE A 161 N ALA A 123 SHEET 7 AA1 9 ARG A 205 TYR A 208 1 O LEU A 207 N LEU A 162 SHEET 8 AA1 9 GLY A 228 VAL A 231 1 O GLY A 228 N TYR A 208 SHEET 9 AA1 9 TYR A 5 ASN A 10 1 N ASN A 10 O VAL A 231 SHEET 1 AA2 9 PHE B 6 ASN B 10 0 SHEET 2 AA2 9 ASP B 38 PHE B 42 1 O PHE B 42 N ALA B 9 SHEET 3 AA2 9 SER B 60 ILE B 63 1 O SER B 60 N VAL B 39 SHEET 4 AA2 9 TYR B 90 ILE B 93 1 O TYR B 90 N ILE B 63 SHEET 5 AA2 9 LYS B 122 PHE B 127 1 O VAL B 124 N VAL B 91 SHEET 6 AA2 9 VAL B 160 TYR B 164 1 O ILE B 161 N ALA B 123 SHEET 7 AA2 9 ILE B 206 TYR B 208 1 O LEU B 207 N LEU B 162 SHEET 8 AA2 9 GLY B 228 VAL B 231 1 O GLY B 228 N TYR B 208 SHEET 9 AA2 9 PHE B 6 ASN B 10 1 N ALA B 8 O VAL B 231 LINK OH TYR A 5 NA NA A 307 1555 1555 2.48 LINK O ILE A 221 NA NA A 307 1555 1555 2.30 LINK O GLN A 223 NA NA A 307 1555 1555 2.36 LINK O ILE A 226 NA NA A 307 1555 1555 2.32 LINK O MET A 248 CA CA A 309 1555 1555 2.35 LINK O1 EDO A 305 CA CA A 309 1555 1555 2.46 LINK O2 EDO A 305 CA CA A 309 1555 1555 2.40 LINK NA NA A 307 O HOH A 461 1555 1555 2.39 LINK CA CA A 309 O HOH A 511 1555 1555 2.44 LINK CA CA A 309 OE1 GLN B 223 1556 1555 2.31 LINK CA CA A 309 O HOH B 485 1555 1554 2.50 LINK CA CA A 309 O HOH B 493 1555 1554 2.45 LINK OH TYR B 5 NA NA B 303 1555 1555 2.45 LINK O ILE B 221 NA NA B 303 1555 1555 2.29 LINK O GLN B 223 NA NA B 303 1555 1555 2.34 LINK O ILE B 226 NA NA B 303 1555 1555 2.38 LINK NA NA B 303 O HOH B 502 1555 1555 2.45 LINK NA NA B 303 O HOH B 525 1555 1555 2.55 SITE 1 AC1 3 LYS A 100 LEU A 167 ILE A 170 SITE 1 AC2 4 GLU A 107 ALA A 149 HOH A 519 HOH A 568 SITE 1 AC3 6 GLY A 128 GLN A 133 GLN A 146 HOH A 451 SITE 2 AC3 6 HOH A 491 HOH A 590 SITE 1 AC4 7 ASN A 10 LYS A 12 HIS A 95 LEU A 230 SITE 2 AC4 7 GLY A 232 HOH A 460 HOH A 477 SITE 1 AC5 9 GLN A 222 SER A 246 MET A 248 CA A 309 SITE 2 AC5 9 HOH A 457 HOH A 511 GLU B 179 GLN B 223 SITE 3 AC5 9 HOH B 493 SITE 1 AC6 5 ARG A 3 LYS A 4 TYR A 5 ASP A 227 SITE 2 AC6 5 HOH A 461 SITE 1 AC7 5 TYR A 5 ILE A 221 GLN A 223 ILE A 226 SITE 2 AC7 5 HOH A 461 SITE 1 AC8 12 SER A 19 SER A 22 LEU A 117 LYS A 118 SITE 2 AC8 12 ASN A 120 ASP A 155 ASN A 156 ASN A 159 SITE 3 AC8 12 GLU A 238 HOH A 478 HOH A 503 HOH A 555 SITE 1 AC9 6 MET A 248 EDO A 305 HOH A 511 GLN B 223 SITE 2 AC9 6 HOH B 485 HOH B 493 SITE 1 AD1 8 ASN B 10 LYS B 12 HIS B 95 LEU B 230 SITE 2 AD1 8 VAL B 231 GLY B 232 HOH B 419 HOH B 423 SITE 1 AD2 6 GLY A 76 HOH A 411 ASN B 65 VAL B 78 SITE 2 AD2 6 HOH B 430 HOH B 566 SITE 1 AD3 6 TYR B 5 ILE B 221 GLN B 223 ILE B 226 SITE 2 AD3 6 HOH B 502 HOH B 525 CRYST1 39.210 76.020 74.360 90.00 97.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025504 0.000000 0.003344 0.00000 SCALE2 0.000000 0.013154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013563 0.00000