HEADER HYDROLASE 25-MAY-15 5BN1 TITLE STRUCTURE OF AXE2-W215I, AN ACETYL XYLAN ESTERASE FROM GEOBACILLUS TITLE 2 STEAROTHERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL XYLAN ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: AXE2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, ACETYL XYLAN ESTERASE, OCTAMER, MUTANT, SGNH EXPDTA X-RAY DIFFRACTION AUTHOR S.LANSKY,O.ALALOUF,Y.SHOHAM,G.SHOHAM REVDAT 2 10-JAN-24 5BN1 1 REMARK REVDAT 1 29-JUN-16 5BN1 0 JRNL AUTH S.LANSKY,O.ALALOUF,H.V.SOLOMON,A.ALHASSID,L.GOVADA, JRNL AUTH 2 N.E.CHAYEN,H.BELRAHLI,Y.SHOHAM,G.SHOHAM JRNL TITL A UNIQUE OCTAMERIC STRUCTURE OF AXE2, AN INTRACELLULAR JRNL TITL 2 ACETYL-XYLOOLIGOSACCHARIDE ESTERASE FROM GEOBACILLUS JRNL TITL 3 STEAROTHERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 81089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4272 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 326 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 555 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.111 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3637 ; 0.028 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3552 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4932 ; 2.670 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8161 ; 1.131 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 6.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;34.270 ;23.614 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 638 ;13.003 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.494 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 548 ; 0.170 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4091 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 846 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1767 ; 2.084 ; 1.796 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1765 ; 2.076 ; 1.792 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2210 ; 2.696 ; 2.684 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2211 ; 2.695 ; 2.686 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1870 ; 4.076 ; 2.149 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1870 ; 4.074 ; 2.149 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2711 ; 5.641 ; 3.065 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4756 ; 7.826 ;16.868 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4757 ; 7.826 ;16.870 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BN1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85395 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3W7V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M K TARTRATE, 0.3 M NACL, 0.1 M REMARK 280 IMIDAZOLE BUFFER PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 54.44000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 54.44000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 108.06000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 54.44000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 54.44000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 108.06000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 54.44000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 54.44000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 108.06000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 54.44000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 54.44000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 108.06000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 54.44000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.44000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 108.06000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 54.44000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 54.44000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 108.06000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 54.44000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 54.44000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 108.06000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.44000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 54.44000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 108.06000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -167.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 411 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 605 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 487 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 611 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 677 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 219 REMARK 465 ARG B 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 19 CA CYS A 19 CB -0.090 REMARK 500 GLY A 31 N GLY A 31 CA -0.098 REMARK 500 GLN A 160 CG GLN A 160 CD 0.163 REMARK 500 GLU A 164 CD GLU A 164 OE1 0.087 REMARK 500 GLU A 210 CD GLU A 210 OE2 0.066 REMARK 500 PHE B 30 CE1 PHE B 30 CZ 0.118 REMARK 500 ARG B 118 NE ARG B 118 CZ 0.101 REMARK 500 ARG B 118 CZ ARG B 118 NH1 0.089 REMARK 500 SER B 196 CB SER B 196 OG 0.082 REMARK 500 GLU B 210 CD GLU B 210 OE1 0.070 REMARK 500 GLU B 210 CD GLU B 210 OE2 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 7 CG - CD - OE2 ANGL. DEV. = 15.4 DEGREES REMARK 500 PHE A 30 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 83 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 152 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 GLN A 160 CB - CG - CD ANGL. DEV. = 17.4 DEGREES REMARK 500 MET A 201 CG - SD - CE ANGL. DEV. = -10.7 DEGREES REMARK 500 PHE B 30 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ASP B 76 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 118 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 149 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 156 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 192 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 209 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 14 -152.45 -101.22 REMARK 500 SER A 29 160.95 172.28 REMARK 500 VAL A 77 -69.27 -122.27 REMARK 500 MET A 103 67.17 -100.38 REMARK 500 PRO A 136 176.96 -58.79 REMARK 500 ALA A 189 110.95 -162.17 REMARK 500 VAL A 193 -56.17 -125.83 REMARK 500 SER A 196 175.65 -59.17 REMARK 500 ASP B 14 -153.29 -102.46 REMARK 500 SER B 29 143.67 169.71 REMARK 500 VAL B 77 -66.15 -120.75 REMARK 500 PRO B 136 172.86 -57.40 REMARK 500 ALA B 189 115.36 -160.08 REMARK 500 VAL B 193 -55.86 -127.22 REMARK 500 SER B 196 174.01 -58.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 669 DISTANCE = 6.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 305 DBREF 5BN1 A 1 219 UNP Q09LX1 Q09LX1_GEOSE 1 219 DBREF 5BN1 B 1 219 UNP Q09LX1 Q09LX1_GEOSE 1 219 SEQADV 5BN1 ILE A 215 UNP Q09LX1 TRP 215 ENGINEERED MUTATION SEQADV 5BN1 ILE B 215 UNP Q09LX1 TRP 215 ENGINEERED MUTATION SEQRES 1 A 219 MET LYS ILE GLY SER GLY GLU LYS LEU LEU PHE ILE GLY SEQRES 2 A 219 ASP SER ILE THR ASP CYS GLY ARG ALA ARG PRO GLU GLY SEQRES 3 A 219 GLU GLY SER PHE GLY ALA LEU GLY THR GLY TYR VAL ALA SEQRES 4 A 219 TYR VAL VAL GLY LEU LEU GLN ALA VAL TYR PRO GLU LEU SEQRES 5 A 219 GLY ILE ARG VAL VAL ASN LYS GLY ILE SER GLY ASN THR SEQRES 6 A 219 VAL ARG ASP LEU LYS ALA ARG TRP GLU GLU ASP VAL ILE SEQRES 7 A 219 ALA GLN LYS PRO ASP TRP VAL SER ILE MET ILE GLY ILE SEQRES 8 A 219 ASN ASP VAL TRP ARG GLN TYR ASP LEU PRO PHE MET LYS SEQRES 9 A 219 GLU LYS HIS VAL TYR LEU ASP GLU TYR GLU ALA THR LEU SEQRES 10 A 219 ARG SER LEU VAL LEU GLU THR LYS PRO LEU VAL LYS GLY SEQRES 11 A 219 ILE ILE LEU MET THR PRO PHE TYR ILE GLU GLY ASN GLU SEQRES 12 A 219 GLN ASP PRO MET ARG ARG THR MET ASP GLN TYR GLY ARG SEQRES 13 A 219 VAL VAL LYS GLN ILE ALA GLU GLU THR ASN SER LEU PHE SEQRES 14 A 219 VAL ASP THR GLN ALA ALA PHE ASN GLU VAL LEU LYS THR SEQRES 15 A 219 LEU TYR PRO ALA ALA LEU ALA TRP ASP ARG VAL HIS PRO SEQRES 16 A 219 SER VAL ALA GLY HIS MET ILE LEU ALA ARG ALA PHE LEU SEQRES 17 A 219 ARG GLU ILE GLY PHE GLU ILE VAL ARG SER ARG SEQRES 1 B 219 MET LYS ILE GLY SER GLY GLU LYS LEU LEU PHE ILE GLY SEQRES 2 B 219 ASP SER ILE THR ASP CYS GLY ARG ALA ARG PRO GLU GLY SEQRES 3 B 219 GLU GLY SER PHE GLY ALA LEU GLY THR GLY TYR VAL ALA SEQRES 4 B 219 TYR VAL VAL GLY LEU LEU GLN ALA VAL TYR PRO GLU LEU SEQRES 5 B 219 GLY ILE ARG VAL VAL ASN LYS GLY ILE SER GLY ASN THR SEQRES 6 B 219 VAL ARG ASP LEU LYS ALA ARG TRP GLU GLU ASP VAL ILE SEQRES 7 B 219 ALA GLN LYS PRO ASP TRP VAL SER ILE MET ILE GLY ILE SEQRES 8 B 219 ASN ASP VAL TRP ARG GLN TYR ASP LEU PRO PHE MET LYS SEQRES 9 B 219 GLU LYS HIS VAL TYR LEU ASP GLU TYR GLU ALA THR LEU SEQRES 10 B 219 ARG SER LEU VAL LEU GLU THR LYS PRO LEU VAL LYS GLY SEQRES 11 B 219 ILE ILE LEU MET THR PRO PHE TYR ILE GLU GLY ASN GLU SEQRES 12 B 219 GLN ASP PRO MET ARG ARG THR MET ASP GLN TYR GLY ARG SEQRES 13 B 219 VAL VAL LYS GLN ILE ALA GLU GLU THR ASN SER LEU PHE SEQRES 14 B 219 VAL ASP THR GLN ALA ALA PHE ASN GLU VAL LEU LYS THR SEQRES 15 B 219 LEU TYR PRO ALA ALA LEU ALA TRP ASP ARG VAL HIS PRO SEQRES 16 B 219 SER VAL ALA GLY HIS MET ILE LEU ALA ARG ALA PHE LEU SEQRES 17 B 219 ARG GLU ILE GLY PHE GLU ILE VAL ARG SER ARG HET GOL A 301 6 HET CL A 302 1 HET IMD A 303 5 HET IMD A 304 5 HET CL B 301 1 HET IMD B 302 5 HET IMD B 303 5 HET TRS B 304 8 HET GOL B 305 6 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM IMD IMIDAZOLE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 CL 2(CL 1-) FORMUL 5 IMD 4(C3 H5 N2 1+) FORMUL 10 TRS C4 H12 N O3 1+ FORMUL 12 HOH *555(H2 O) HELIX 1 AA1 ASP A 14 CYS A 19 1 6 HELIX 2 AA2 PHE A 30 GLY A 34 5 5 HELIX 3 AA3 GLY A 36 TYR A 49 1 14 HELIX 4 AA4 THR A 65 VAL A 77 1 13 HELIX 5 AA5 ILE A 78 LYS A 81 5 4 HELIX 6 AA6 GLY A 90 LEU A 100 1 11 HELIX 7 AA7 MET A 103 HIS A 107 5 5 HELIX 8 AA8 TYR A 109 LYS A 125 1 17 HELIX 9 AA9 PRO A 126 VAL A 128 5 3 HELIX 10 AB1 ASP A 145 ASN A 166 1 22 HELIX 11 AB2 ASP A 171 LYS A 181 1 11 HELIX 12 AB3 TYR A 184 LEU A 188 5 5 HELIX 13 AB4 SER A 196 GLY A 212 1 17 HELIX 14 AB5 ASP B 14 CYS B 19 1 6 HELIX 15 AB6 SER B 29 GLY B 34 1 6 HELIX 16 AB7 GLY B 36 TYR B 49 1 14 HELIX 17 AB8 THR B 65 VAL B 77 1 13 HELIX 18 AB9 ILE B 78 LYS B 81 5 4 HELIX 19 AC1 GLY B 90 LEU B 100 1 11 HELIX 20 AC2 MET B 103 HIS B 107 5 5 HELIX 21 AC3 TYR B 109 LYS B 125 1 17 HELIX 22 AC4 PRO B 126 VAL B 128 5 3 HELIX 23 AC5 ASP B 145 ASN B 166 1 22 HELIX 24 AC6 ASP B 171 LYS B 181 1 11 HELIX 25 AC7 TYR B 184 LEU B 188 5 5 HELIX 26 AC8 SER B 196 GLY B 212 1 17 SHEET 1 AA1 5 ARG A 55 ASN A 58 0 SHEET 2 AA1 5 LYS A 8 GLY A 13 1 N LEU A 9 O ARG A 55 SHEET 3 AA1 5 TRP A 84 MET A 88 1 O SER A 86 N LEU A 10 SHEET 4 AA1 5 GLY A 130 MET A 134 1 O ILE A 132 N VAL A 85 SHEET 5 AA1 5 LEU A 168 VAL A 170 1 O LEU A 168 N LEU A 133 SHEET 1 AA2 5 ARG B 55 ASN B 58 0 SHEET 2 AA2 5 LYS B 8 GLY B 13 1 N LEU B 9 O ARG B 55 SHEET 3 AA2 5 TRP B 84 MET B 88 1 O SER B 86 N LEU B 10 SHEET 4 AA2 5 GLY B 130 MET B 134 1 O ILE B 132 N VAL B 85 SHEET 5 AA2 5 LEU B 168 VAL B 170 1 O LEU B 168 N ILE B 131 CISPEP 1 ARG A 23 PRO A 24 0 2.10 CISPEP 2 ARG B 23 PRO B 24 0 1.16 SITE 1 AC1 6 TYR A 109 ASP A 111 HOH A 411 HOH A 504 SITE 2 AC1 6 HOH A 512 HOH A 570 SITE 1 AC2 4 SER A 15 GLY A 63 ASN A 92 HOH A 596 SITE 1 AC3 5 ARG A 205 ARG A 209 GLU A 214 ILE A 215 SITE 2 AC3 5 HOH A 417 SITE 1 AC4 6 GLU A 114 ARG A 156 GLN A 160 GLU A 164 SITE 2 AC4 6 HOH A 552 HOH A 605 SITE 1 AC5 3 SER B 15 GLY B 63 ASN B 92 SITE 1 AC6 4 ARG B 67 GLU B 74 GLU B 123 HOH B 619 SITE 1 AC7 5 ARG B 205 ARG B 209 GLU B 214 ILE B 215 SITE 2 AC7 5 HOH B 540 SITE 1 AC8 10 PRO A 146 GLU B 140 GLY B 141 ASN B 142 SITE 2 AC8 10 PRO B 185 HOH B 418 HOH B 436 HOH B 441 SITE 3 AC8 10 HOH B 494 HOH B 549 SITE 1 AC9 7 GLU A 140 GLY A 141 PRO A 185 HOH A 439 SITE 2 AC9 7 HOH A 443 PRO B 146 HOH B 582 CRYST1 108.880 108.880 216.120 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009184 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004627 0.00000